Wall clock time and date at job start Tue Mar 31 2020 15:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99679 * 2 1 4 4 H 1.48499 * 109.46715 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.46919 * 29.99802 * 3 2 1 6 6 H 1.48494 * 109.46964 * 149.99896 * 3 2 1 7 7 C 1.37875 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00024 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47341 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00082 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46785 * 185.27856 * 11 10 9 13 13 H 1.08997 * 109.47536 * 54.76716 * 12 11 10 14 14 C 1.53005 * 109.46866 * 294.76631 * 12 11 10 15 15 O 1.42893 * 109.47365 * 304.66076 * 14 12 11 16 16 C 1.53006 * 109.46911 * 174.77165 * 12 11 10 17 17 C 1.50695 * 109.46952 * 185.47349 * 16 12 11 18 18 C 1.38244 * 120.00873 * 260.45058 * 17 16 12 19 19 C 1.38213 * 120.01382 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.01856 * 359.97438 * 19 18 17 21 21 C 1.38202 * 120.01290 * 359.97438 * 20 19 18 22 22 C 1.38306 * 120.00421 * 80.43530 * 17 16 12 23 23 Br 1.89103 * 120.00881 * 359.97438 * 22 17 16 24 24 H 0.96989 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47550 * 60.00035 * 9 7 2 26 26 H 1.09009 * 109.47302 * 299.99956 * 9 7 2 27 27 H 1.00903 * 110.99930 * 303.95444 * 10 9 7 28 28 H 1.08995 * 109.47435 * 65.28203 * 11 10 9 29 29 H 1.08994 * 109.47003 * 305.27458 * 11 10 9 30 30 H 1.08995 * 109.46891 * 64.66422 * 14 12 11 31 31 H 1.09007 * 109.46871 * 184.65701 * 14 12 11 32 32 H 0.96702 * 114.00055 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46849 * 65.47083 * 16 12 11 34 34 H 1.09001 * 109.46662 * 305.47769 * 16 12 11 35 35 H 1.08002 * 119.99255 * 359.97438 * 18 17 16 36 36 H 1.07993 * 119.99272 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99735 * 179.71460 * 20 19 18 38 38 H 1.07996 * 120.00476 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9413 -4.0675 -0.1319 13 1 5.4914 -4.5163 -1.0174 14 6 5.5204 -4.8565 1.1096 15 8 6.0205 -4.2061 2.2796 16 6 7.4654 -4.0980 -0.2630 17 6 7.9186 -5.5105 -0.5282 18 6 8.4114 -6.2842 0.5060 19 6 8.8266 -7.5799 0.2630 20 6 8.7487 -8.1031 -1.0144 21 6 8.2552 -7.3309 -2.0489 22 6 7.8412 -6.0332 -1.8064 23 35 7.1661 -4.9758 -3.2213 24 1 -0.4850 0.8399 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8753 -0.6803 -0.8889 27 1 3.6255 -3.0954 0.7821 28 1 5.8445 -2.1982 0.9344 29 1 5.8487 -2.0344 -0.8380 30 1 4.4326 -4.9049 1.1577 31 1 5.9269 -5.8664 1.0534 32 1 5.7914 -4.6527 3.1061 33 1 7.9169 -3.7391 0.6619 34 1 7.7718 -3.4568 -1.0895 35 1 8.4720 -5.8761 1.5041 36 1 9.2119 -8.1839 1.0711 37 1 9.0775 -9.1141 -1.2048 38 1 8.1940 -7.7398 -3.0465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570044697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:49 Heat of formation + Delta-G solvation = -32.284233 kcal Electronic energy + Delta-G solvation = -19703.056533 eV Core-core repulsion = 16591.128572 eV Total energy + Delta-G solvation = -3111.927961 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85657 -37.72537 -35.28170 -34.02320 -32.47061 -32.20323 -30.57431 -29.35355 -27.30276 -26.15153 -24.18511 -22.69303 -21.62513 -20.88225 -19.67226 -17.51609 -16.79730 -16.68693 -15.82727 -15.47363 -15.31720 -14.61840 -14.23153 -13.98519 -13.70425 -13.53339 -13.29475 -13.13655 -12.75811 -12.42143 -12.21883 -11.73447 -11.60474 -11.35372 -11.28395 -11.13063 -10.74250 -10.55243 -10.47033 -10.22974 -10.05501 -9.91752 -9.69526 -9.22613 -9.05440 -8.78406 -8.54769 -7.35901 -6.02177 -3.99515 0.88253 1.05586 1.56015 3.32287 3.37993 3.39002 3.42756 4.37029 4.46022 4.51472 4.61255 4.70123 4.97904 5.03004 5.11308 5.19224 5.23188 5.31025 5.41041 5.47573 5.65465 5.71634 5.84773 5.92505 5.93876 6.03103 6.15136 6.19183 6.25445 6.43045 6.58301 6.63757 6.86907 7.10600 7.66748 7.71224 7.96864 8.41797 8.70789 9.05744 9.60410 11.11222 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.003559 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.001283 B = 7866.485253 C = 8805.971979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.165 3.835 10 N -0.680 5.680 11 C 0.066 3.934 12 C -0.075 4.075 13 H 0.094 0.906 14 C 0.076 3.924 15 O -0.569 6.569 16 C -0.085 4.085 17 C -0.043 4.043 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.091 4.091 22 C -0.093 4.093 23 Br -0.041 7.041 24 H 0.263 0.737 25 H -0.016 1.016 26 H 0.021 0.979 27 H 0.333 0.667 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.373 0.627 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.277 -17.128 -1.484 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.037 3.963 10 N -0.310 5.310 11 C -0.064 4.064 12 C -0.094 4.094 13 H 0.112 0.888 14 C -0.001 4.001 15 O -0.373 6.373 16 C -0.123 4.123 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.172 4.172 23 Br 0.045 6.955 24 H 0.073 0.927 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.150 0.850 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.219 0.781 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.038 -16.235 -3.169 26.762 hybrid contribution 0.451 0.459 1.551 1.679 sum 21.489 -15.776 -1.618 26.707 Atomic orbital electron populations 1.69899 1.06155 1.26821 1.51260 1.24906 0.94743 0.98950 0.94785 0.86822 0.80312 0.83829 0.78583 1.20167 1.21257 1.19201 1.21077 0.89052 0.94730 1.50326 0.90391 1.19970 0.96464 0.85225 0.94665 1.60492 1.04661 1.16617 1.49267 1.21803 0.90581 0.94066 0.99930 1.21233 0.93375 0.97592 0.97169 0.88824 1.22260 0.97806 0.94517 0.85540 1.86486 1.79503 1.55176 1.16164 1.20793 0.96528 0.91491 1.03481 1.19901 0.96165 0.97057 0.91329 1.21140 0.98919 0.94023 0.98909 1.21276 0.98648 0.95514 0.97024 1.21122 1.00516 0.99969 0.92771 1.21112 0.97740 0.92208 1.00004 1.21859 1.05985 0.95977 0.93413 1.96781 1.85399 1.69231 1.44095 0.92711 0.99882 0.96132 0.84994 0.95058 0.91963 0.92909 0.94103 0.78083 0.89784 0.90038 0.85065 0.85621 0.85442 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.51 -15.08 9.87 -34.44 -0.34 -15.42 16 8 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 9 C 0.16 4.16 4.50 -4.98 -0.02 4.14 16 10 N -0.68 -14.55 6.44 -115.06 -0.74 -15.29 16 11 C 0.07 1.17 5.03 -3.82 -0.02 1.15 16 12 C -0.07 -1.07 2.32 -90.61 -0.21 -1.28 16 13 H 0.09 1.43 7.10 -51.93 -0.37 1.07 16 14 C 0.08 0.98 6.13 37.16 0.23 1.21 16 15 O -0.57 -7.01 12.13 -35.23 -0.43 -7.44 16 16 C -0.09 -1.05 4.18 -27.88 -0.12 -1.17 16 17 C -0.04 -0.48 4.44 -104.60 -0.46 -0.94 16 18 C -0.11 -1.06 8.60 -39.59 -0.34 -1.40 16 19 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 20 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 21 C -0.09 -0.86 9.79 -39.55 -0.39 -1.25 16 22 C -0.09 -1.04 6.22 -39.52 -0.25 -1.29 16 23 Br -0.04 -0.49 30.93 -68.01 -2.10 -2.60 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H -0.02 -0.42 7.20 -51.93 -0.37 -0.80 16 26 H 0.02 0.53 7.57 -51.92 -0.39 0.13 16 27 H 0.33 6.93 7.29 -39.29 -0.29 6.65 16 28 H 0.03 0.57 7.40 -51.93 -0.38 0.19 16 29 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.05 0.73 7.03 -51.93 -0.37 0.36 16 31 H 0.04 0.47 6.48 -51.92 -0.34 0.13 16 32 H 0.37 3.03 9.12 45.56 0.42 3.44 16 33 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 34 H 0.08 1.03 7.12 -51.93 -0.37 0.66 16 35 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -32.64 328.86 -9.58 -42.22 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.56 Total: 5.11 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.81 Total: -17.00 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.03 Total: -42.73 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.43 Total: -7.44 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.10 Total: -2.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.64 -9.58 -42.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.938 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds