Wall clock time and date at job start Tue Mar 31 2020 15:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99679 * 2 1 4 4 H 1.48499 * 109.46715 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.46919 * 29.99802 * 3 2 1 6 6 H 1.48494 * 109.46964 * 149.99896 * 3 2 1 7 7 C 1.37875 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00024 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47341 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00082 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46785 * 185.27856 * 11 10 9 13 13 H 1.08997 * 109.47536 * 54.76716 * 12 11 10 14 14 C 1.53005 * 109.46866 * 294.76631 * 12 11 10 15 15 O 1.42893 * 109.47365 * 304.66076 * 14 12 11 16 16 C 1.53006 * 109.46911 * 174.77165 * 12 11 10 17 17 C 1.50695 * 109.46952 * 185.47349 * 16 12 11 18 18 C 1.38244 * 120.00873 * 260.45058 * 17 16 12 19 19 C 1.38213 * 120.01382 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.01856 * 359.97438 * 19 18 17 21 21 C 1.38202 * 120.01290 * 359.97438 * 20 19 18 22 22 C 1.38306 * 120.00421 * 80.43530 * 17 16 12 23 23 Br 1.89103 * 120.00881 * 359.97438 * 22 17 16 24 24 H 0.96989 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47550 * 60.00035 * 9 7 2 26 26 H 1.09009 * 109.47302 * 299.99956 * 9 7 2 27 27 H 1.00903 * 110.99930 * 303.95444 * 10 9 7 28 28 H 1.08995 * 109.47435 * 65.28203 * 11 10 9 29 29 H 1.08994 * 109.47003 * 305.27458 * 11 10 9 30 30 H 1.08995 * 109.46891 * 64.66422 * 14 12 11 31 31 H 1.09007 * 109.46871 * 184.65701 * 14 12 11 32 32 H 0.96702 * 114.00055 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46849 * 65.47083 * 16 12 11 34 34 H 1.09001 * 109.46662 * 305.47769 * 16 12 11 35 35 H 1.08002 * 119.99255 * 359.97438 * 18 17 16 36 36 H 1.07993 * 119.99272 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99735 * 179.71460 * 20 19 18 38 38 H 1.07996 * 120.00476 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9413 -4.0675 -0.1319 13 1 5.4914 -4.5163 -1.0174 14 6 5.5204 -4.8565 1.1096 15 8 6.0205 -4.2061 2.2796 16 6 7.4654 -4.0980 -0.2630 17 6 7.9186 -5.5105 -0.5282 18 6 8.4114 -6.2842 0.5060 19 6 8.8266 -7.5799 0.2630 20 6 8.7487 -8.1031 -1.0144 21 6 8.2552 -7.3309 -2.0489 22 6 7.8412 -6.0332 -1.8064 23 35 7.1661 -4.9758 -3.2213 24 1 -0.4850 0.8399 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8753 -0.6803 -0.8889 27 1 3.6255 -3.0954 0.7821 28 1 5.8445 -2.1982 0.9344 29 1 5.8487 -2.0344 -0.8380 30 1 4.4326 -4.9049 1.1577 31 1 5.9269 -5.8664 1.0534 32 1 5.7914 -4.6527 3.1061 33 1 7.9169 -3.7391 0.6619 34 1 7.7718 -3.4568 -1.0895 35 1 8.4720 -5.8761 1.5041 36 1 9.2119 -8.1839 1.0711 37 1 9.0775 -9.1141 -1.2048 38 1 8.1940 -7.7398 -3.0465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570044697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:49 Heat of formation + Delta-G solvation = -55.368288 kcal Electronic energy + Delta-G solvation = -19704.057533 eV Core-core repulsion = 16591.128572 eV Total energy + Delta-G solvation = -3112.928961 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64974 -38.81504 -36.73695 -35.29074 -34.28413 -33.13698 -31.74206 -30.19175 -29.07168 -27.11724 -25.66062 -23.41137 -23.17946 -22.22750 -20.80069 -19.01648 -18.39511 -17.49992 -17.04297 -16.64432 -16.13107 -16.07505 -15.83004 -15.29974 -14.94805 -14.56150 -14.38649 -14.28377 -14.13123 -13.75015 -13.66696 -13.23873 -12.95206 -12.58920 -12.46822 -12.17109 -12.04245 -11.97730 -11.80301 -11.62099 -11.48078 -11.43366 -10.98032 -10.81901 -10.78701 -9.77986 -9.56450 -9.11564 -8.31451 -6.35682 0.16759 0.35312 0.75243 1.33652 1.34828 1.46462 2.32910 2.68017 3.02428 3.36531 3.58694 3.78513 3.84975 4.01898 4.08189 4.14033 4.31991 4.43252 4.45841 4.61379 4.63259 4.74032 4.74492 4.78972 4.87352 4.93559 5.05789 5.08074 5.15866 5.30029 5.39923 5.49626 5.51607 5.56454 5.92368 5.95976 6.55297 6.65039 6.76164 6.95288 7.29384 8.85261 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.003559 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.001283 B = 7866.485253 C = 8805.971979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.527 4.527 8 H 0.038 0.962 9 C 0.176 3.824 10 N -0.685 5.685 11 C 0.070 3.930 12 C -0.068 4.068 13 H 0.081 0.919 14 C 0.084 3.916 15 O -0.580 6.580 16 C -0.075 4.075 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.120 4.120 21 C -0.100 4.100 22 C -0.108 4.108 23 Br -0.062 7.062 24 H 0.268 0.732 25 H -0.017 1.017 26 H 0.021 0.979 27 H 0.335 0.665 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.702 -17.920 -0.700 29.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.565 4.565 8 H 0.056 0.944 9 C 0.047 3.953 10 N -0.316 5.316 11 C -0.059 4.059 12 C -0.087 4.087 13 H 0.099 0.901 14 C 0.006 3.994 15 O -0.387 6.387 16 C -0.112 4.112 17 C -0.061 4.061 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.187 4.187 23 Br 0.024 6.976 24 H 0.077 0.923 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.152 0.848 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.241 0.759 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 23.479 -17.056 -2.370 29.116 hybrid contribution -0.308 0.551 1.342 1.483 sum 23.170 -16.505 -1.028 28.467 Atomic orbital electron populations 1.70043 1.08072 1.28241 1.52321 1.25860 0.95653 1.03224 0.94118 0.85673 0.79265 0.78494 0.79256 1.19072 1.20321 1.17734 1.21326 0.91283 0.93479 1.50451 0.94376 1.19721 0.93757 0.87407 0.94427 1.60407 1.07184 1.14442 1.49559 1.21839 0.87935 0.96617 0.99528 1.21106 0.94871 0.95147 0.97609 0.90059 1.22103 0.96927 0.95083 0.85238 1.86435 1.79469 1.55860 1.16961 1.20617 0.94748 0.92674 1.03201 1.19821 0.97773 0.96562 0.91946 1.21317 0.98625 0.94589 0.98834 1.21641 0.97403 0.95053 0.97911 1.21505 0.99072 1.00981 0.92275 1.21352 0.97707 0.91685 1.01204 1.21956 1.07141 0.96659 0.92967 1.96753 1.85779 1.69979 1.45089 0.92297 0.99897 0.96111 0.84779 0.95288 0.92368 0.94370 0.92236 0.75867 0.89644 0.90828 0.84085 0.82716 0.82577 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.01 0.54 5.47 84.65 0.46 1.00 16 3 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 7 C -0.53 -31.68 9.87 25.60 0.25 -31.43 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 C 0.18 8.88 4.50 85.56 0.38 9.26 16 10 N -0.69 -29.60 6.44 -517.93 -3.34 -32.94 16 11 C 0.07 2.46 5.03 86.30 0.43 2.90 16 12 C -0.07 -1.92 2.32 -10.79 -0.03 -1.95 16 13 H 0.08 2.50 7.10 -2.39 -0.02 2.49 16 14 C 0.08 2.07 6.13 71.98 0.44 2.51 16 15 O -0.58 -13.33 12.13 -148.98 -1.81 -15.14 16 16 C -0.07 -1.78 4.18 29.85 0.12 -1.65 16 17 C -0.06 -1.24 4.44 -19.85 -0.09 -1.33 16 18 C -0.11 -1.89 8.60 22.27 0.19 -1.70 16 19 C -0.10 -1.28 10.05 22.27 0.22 -1.06 16 20 C -0.12 -1.53 10.05 22.27 0.22 -1.31 16 21 C -0.10 -1.70 9.79 22.29 0.22 -1.48 16 22 C -0.11 -2.31 6.22 22.31 0.14 -2.18 16 23 Br -0.06 -1.49 30.93 -20.37 -0.63 -2.12 16 24 H 0.27 15.84 8.31 -92.72 -0.77 15.07 16 25 H -0.02 -0.84 7.20 -2.39 -0.02 -0.85 16 26 H 0.02 1.05 7.57 -2.38 -0.02 1.03 16 27 H 0.33 14.18 7.29 -89.69 -0.65 13.53 16 28 H 0.03 1.04 7.40 -2.39 -0.02 1.02 16 29 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 30 H 0.04 1.04 7.03 -2.39 -0.02 1.02 16 31 H 0.06 1.25 6.48 -2.38 -0.02 1.23 16 32 H 0.39 5.57 9.12 -74.06 -0.68 4.90 16 33 H 0.08 1.99 7.54 -2.39 -0.02 1.97 16 34 H 0.07 1.84 7.12 -2.39 -0.02 1.82 16 35 H 0.14 2.00 8.04 -2.91 -0.02 1.97 16 36 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.00 328.86 -0.92 -71.92 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.31 Total: 19.31 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 2.98 Total: -28.41 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -3.04 Total: -92.93 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.81 Total: -15.14 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -0.63 Total: -2.12 kcal Total: -71.00 -0.92 -71.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.552 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds