Wall clock time and date at job start Tue Mar 31 2020 15:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 14 14 C 1.53004 * 109.47236 * 64.99771 * 12 11 10 15 15 O 1.42904 * 109.47325 * 185.00172 * 14 12 11 16 16 C 1.52997 * 109.47504 * 184.99955 * 12 11 10 17 17 C 1.50691 * 109.47514 * 175.00045 * 16 12 11 18 18 C 1.38243 * 120.00583 * 264.72981 * 17 16 12 19 19 C 1.38231 * 120.00922 * 179.72176 * 18 17 16 20 20 C 1.38265 * 120.01905 * 0.54801 * 19 18 17 21 21 C 1.38194 * 120.00661 * 359.72472 * 20 19 18 22 22 C 1.38307 * 120.00691 * 84.99888 * 17 16 12 23 23 Br 1.89094 * 120.00857 * 359.97438 * 22 17 16 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.08998 * 109.46828 * 305.00171 * 14 12 11 31 31 H 1.09002 * 109.47067 * 65.00027 * 14 12 11 32 32 H 0.96695 * 113.99864 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46810 * 294.99909 * 16 12 11 34 34 H 1.08998 * 109.47247 * 54.99778 * 16 12 11 35 35 H 1.08000 * 119.99572 * 359.97038 * 18 17 16 36 36 H 1.07995 * 119.98714 * 180.29443 * 19 18 17 37 37 H 1.07992 * 119.99235 * 179.74635 * 20 19 18 38 38 H 1.08003 * 119.99691 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 1 3.2112 -5.9175 -0.8436 14 6 3.3246 -6.0140 1.3055 15 8 4.3582 -6.9996 1.2569 16 6 1.8049 -7.3842 -0.1281 17 6 2.8176 -8.4932 -0.2522 18 6 3.1863 -8.9561 -1.5016 19 6 4.1195 -9.9695 -1.6157 20 6 4.6762 -10.5283 -0.4801 21 6 4.3039 -10.0700 0.7693 22 6 3.3742 -9.0520 0.8839 23 35 2.8652 -8.4240 2.5934 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 3.7690 -5.0277 1.4387 31 1 2.6577 -6.2278 2.1408 32 1 4.9029 -7.0379 2.0549 33 1 1.1911 -7.5501 0.7572 34 1 1.1695 -7.3717 -1.0136 35 1 2.7482 -8.5232 -2.3887 36 1 4.4109 -10.3275 -2.5920 37 1 5.4022 -11.3228 -0.5697 38 1 4.7385 -10.5070 1.6563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570044698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:52 Heat of formation + Delta-G solvation = -2.187090 kcal Electronic energy + Delta-G solvation = -19902.926692 eV Core-core repulsion = 16792.303840 eV Total energy + Delta-G solvation = -3110.622851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74573 -37.54644 -35.52269 -33.80317 -32.45807 -32.06340 -30.41350 -29.26912 -26.86002 -25.73669 -24.18523 -22.48769 -21.76525 -21.01752 -19.81409 -17.39320 -16.68253 -16.28832 -16.14421 -15.25404 -15.10151 -14.79380 -14.53934 -13.91556 -13.52364 -13.39757 -13.23033 -12.95136 -12.62461 -12.31228 -11.84558 -11.51973 -11.51232 -11.25280 -11.15145 -10.92263 -10.82427 -10.60772 -10.55647 -10.34245 -9.87870 -9.52999 -9.23653 -9.19383 -8.81457 -8.48000 -8.36831 -7.30135 -6.03424 -4.05532 1.19460 1.30031 1.75591 3.33472 3.37218 3.40541 3.64187 4.42348 4.46967 4.66778 4.79975 4.89286 5.06601 5.17893 5.25036 5.32311 5.38917 5.44496 5.55878 5.65800 5.74007 5.89290 5.92574 5.98490 6.01636 6.20155 6.22603 6.34758 6.39335 6.46242 6.63046 6.83201 7.24728 7.41249 7.75352 7.77777 8.12424 8.37819 8.60358 9.03427 9.59374 11.07665 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.003168 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.090576 B = 8835.187652 C = 9344.329038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.690 5.690 11 C 0.066 3.934 12 C -0.072 4.072 13 H 0.085 0.915 14 C 0.064 3.936 15 O -0.564 6.564 16 C -0.085 4.085 17 C -0.038 4.038 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.028 4.028 23 Br -0.050 7.050 24 H 0.262 0.738 25 H 0.028 0.972 26 H -0.014 1.014 27 H 0.327 0.673 28 H 0.020 0.980 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.366 0.634 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -23.910 3.693 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.321 5.321 11 C -0.064 4.064 12 C -0.091 4.091 13 H 0.103 0.897 14 C -0.014 4.014 15 O -0.370 6.370 16 C -0.123 4.123 17 C -0.040 4.040 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.107 4.107 23 Br 0.035 6.965 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.004 0.996 27 H 0.144 0.856 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.214 0.786 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.563 -23.627 3.065 24.713 hybrid contribution 0.516 1.001 1.020 1.520 sum 7.079 -22.626 4.085 24.057 Atomic orbital electron populations 1.69952 1.06082 1.26911 1.50821 1.24992 0.94882 0.99364 0.95323 0.86540 0.79422 0.82642 0.78667 1.20123 1.21332 1.20278 1.21155 0.93475 0.90287 1.50482 0.92044 1.19551 0.90592 0.87352 0.95788 1.60709 1.21240 1.01264 1.48933 1.21857 0.94639 0.89734 1.00171 1.21130 0.96973 0.92920 0.98031 0.89708 1.22523 0.89994 0.90779 0.98091 1.86810 1.47654 1.57833 1.44705 1.20787 0.95896 0.92256 1.03316 1.19625 0.97024 0.95536 0.91792 1.21023 0.98232 0.97247 0.96579 1.21142 0.96888 0.96744 0.98539 1.21007 1.00503 1.00551 0.92120 1.20949 0.97049 0.96372 0.98104 1.21463 1.00628 0.97849 0.90767 1.96502 1.90468 1.89153 1.20350 0.92846 0.95375 0.99618 0.85570 0.96160 0.91193 0.93360 0.92695 0.78593 0.90370 0.90544 0.85627 0.86045 0.85966 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.12 5.44 -4.98 -0.03 5.09 16 10 N -0.69 -14.82 6.49 -115.06 -0.75 -15.56 16 11 C 0.07 1.16 5.14 -3.83 -0.02 1.14 16 12 C -0.07 -1.04 2.43 -90.62 -0.22 -1.26 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 14 C 0.06 0.87 5.35 37.16 0.20 1.07 16 15 O -0.56 -7.05 7.78 -35.23 -0.27 -7.33 16 16 C -0.08 -1.07 4.62 -27.89 -0.13 -1.20 16 17 C -0.04 -0.47 4.47 -104.60 -0.47 -0.93 16 18 C -0.11 -1.26 9.68 -39.58 -0.38 -1.65 16 19 C -0.11 -1.14 10.05 -39.57 -0.40 -1.54 16 20 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 21 C -0.10 -1.09 9.79 -39.56 -0.39 -1.47 16 22 C -0.03 -0.33 4.01 -39.52 -0.16 -0.48 16 23 Br -0.05 -0.54 25.65 -68.01 -1.74 -2.29 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 27 H 0.33 6.71 6.88 -39.29 -0.27 6.44 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.71 6.47 -51.93 -0.34 0.37 16 31 H 0.06 0.72 5.79 -51.93 -0.30 0.42 16 32 H 0.37 3.69 8.32 45.56 0.38 4.07 16 33 H 0.08 0.98 6.89 -51.93 -0.36 0.62 16 34 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -30.83 321.33 -9.67 -40.50 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.65 Total: 5.66 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.81 Total: -16.37 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.01 Total: -41.81 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.27 Total: -7.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -1.74 Total: -2.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.83 -9.67 -40.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.314 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds