Wall clock time and date at job start Tue Mar 31 2020 15:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 14 14 C 1.53004 * 109.47236 * 64.99771 * 12 11 10 15 15 O 1.42904 * 109.47325 * 185.00172 * 14 12 11 16 16 C 1.52997 * 109.47504 * 184.99955 * 12 11 10 17 17 C 1.50691 * 109.47514 * 175.00045 * 16 12 11 18 18 C 1.38243 * 120.00583 * 264.72981 * 17 16 12 19 19 C 1.38231 * 120.00922 * 179.72176 * 18 17 16 20 20 C 1.38265 * 120.01905 * 0.54801 * 19 18 17 21 21 C 1.38194 * 120.00661 * 359.72472 * 20 19 18 22 22 C 1.38307 * 120.00691 * 84.99888 * 17 16 12 23 23 Br 1.89094 * 120.00857 * 359.97438 * 22 17 16 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.08998 * 109.46828 * 305.00171 * 14 12 11 31 31 H 1.09002 * 109.47067 * 65.00027 * 14 12 11 32 32 H 0.96695 * 113.99864 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46810 * 294.99909 * 16 12 11 34 34 H 1.08998 * 109.47247 * 54.99778 * 16 12 11 35 35 H 1.08000 * 119.99572 * 359.97038 * 18 17 16 36 36 H 1.07995 * 119.98714 * 180.29443 * 19 18 17 37 37 H 1.07992 * 119.99235 * 179.74635 * 20 19 18 38 38 H 1.08003 * 119.99691 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 1 3.2112 -5.9175 -0.8436 14 6 3.3246 -6.0140 1.3055 15 8 4.3582 -6.9996 1.2569 16 6 1.8049 -7.3842 -0.1281 17 6 2.8176 -8.4932 -0.2522 18 6 3.1863 -8.9561 -1.5016 19 6 4.1195 -9.9695 -1.6157 20 6 4.6762 -10.5283 -0.4801 21 6 4.3039 -10.0700 0.7693 22 6 3.3742 -9.0520 0.8839 23 35 2.8652 -8.4240 2.5934 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 3.7690 -5.0277 1.4387 31 1 2.6577 -6.2278 2.1408 32 1 4.9029 -7.0379 2.0549 33 1 1.1911 -7.5501 0.7572 34 1 1.1695 -7.3717 -1.0136 35 1 2.7482 -8.5232 -2.3887 36 1 4.4109 -10.3275 -2.5920 37 1 5.4022 -11.3228 -0.5697 38 1 4.7385 -10.5070 1.6563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570044698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:52 Heat of formation + Delta-G solvation = -22.163682 kcal Electronic energy + Delta-G solvation = -19903.792942 eV Core-core repulsion = 16792.303840 eV Total energy + Delta-G solvation = -3111.489101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64326 -38.66578 -36.97568 -35.29338 -34.13479 -32.99677 -31.63106 -30.12401 -28.67272 -26.79718 -25.74620 -23.58390 -23.26507 -22.21773 -20.97682 -18.77821 -18.14351 -17.48763 -17.17180 -16.76416 -16.28866 -16.09433 -15.82214 -15.26523 -14.90981 -14.63685 -14.26628 -14.17272 -13.88106 -13.61997 -13.41976 -13.05459 -12.91175 -12.65126 -12.49188 -12.33944 -12.08670 -12.07281 -11.79749 -11.66589 -11.42560 -11.25504 -10.66444 -10.43146 -10.20767 -9.64657 -9.23137 -9.12603 -8.23269 -6.34748 0.38981 0.49000 0.91887 1.40825 1.44437 1.52501 2.39541 2.82759 3.09910 3.36794 3.54460 3.79582 3.98400 4.07589 4.11989 4.25319 4.39417 4.46873 4.58322 4.62974 4.70629 4.77712 4.80117 4.85476 4.92940 5.06734 5.11144 5.17855 5.26209 5.34512 5.43888 5.59316 5.61095 5.66332 6.01001 6.06136 6.42270 6.70260 6.83196 6.87268 7.36211 8.88141 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.003168 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.090576 B = 8835.187652 C = 9344.329038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.689 5.689 11 C 0.068 3.932 12 C -0.059 4.059 13 H 0.069 0.931 14 C 0.072 3.928 15 O -0.563 6.563 16 C -0.079 4.079 17 C -0.059 4.059 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.039 4.039 23 Br -0.050 7.050 24 H 0.266 0.734 25 H 0.001 0.999 26 H -0.038 1.038 27 H 0.334 0.666 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.378 0.622 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 -24.758 3.751 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.321 5.321 11 C -0.061 4.061 12 C -0.078 4.078 13 H 0.087 0.913 14 C -0.007 4.007 15 O -0.371 6.371 16 C -0.117 4.117 17 C -0.060 4.060 18 C -0.144 4.144 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.118 4.118 23 Br 0.036 6.964 24 H 0.074 0.926 25 H 0.019 0.981 26 H -0.020 1.020 27 H 0.152 0.848 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.206 -24.505 3.133 26.032 hybrid contribution 0.023 1.153 0.989 1.519 sum 8.229 -23.352 4.123 25.100 Atomic orbital electron populations 1.70080 1.07794 1.28118 1.51364 1.25957 0.95801 1.03386 0.94509 0.85382 0.78121 0.77598 0.79180 1.19347 1.20711 1.19051 1.21520 0.93784 0.91496 1.50868 0.91836 1.19207 0.90636 0.88851 0.93301 1.60581 1.20546 1.01607 1.49352 1.21902 0.95376 0.88845 1.00012 1.20927 0.96049 0.92804 0.98045 0.91264 1.22356 0.90260 0.90453 0.97591 1.86800 1.47548 1.57158 1.45596 1.20687 0.96037 0.91326 1.03602 1.19636 0.97712 0.96055 0.92639 1.21238 0.98821 0.97893 0.96486 1.21464 0.96189 0.96103 0.99929 1.21385 1.00361 1.00670 0.91586 1.21228 0.96656 0.95988 0.99236 1.21594 1.01162 0.98460 0.90628 1.96490 1.90559 1.89203 1.20150 0.92557 0.98103 1.02018 0.84826 0.95972 0.91614 0.94634 0.92074 0.77257 0.90357 0.90038 0.85085 0.83791 0.83271 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.16 9.32 25.60 0.24 -30.92 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.32 5.44 85.55 0.47 11.79 16 10 N -0.69 -30.17 6.49 -517.93 -3.36 -33.53 16 11 C 0.07 2.43 5.14 86.30 0.44 2.87 16 12 C -0.06 -1.72 2.43 -10.79 -0.03 -1.75 16 13 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 14 C 0.07 1.91 5.35 71.98 0.38 2.30 16 15 O -0.56 -13.46 7.78 -148.98 -1.16 -14.62 16 16 C -0.08 -1.95 4.62 29.84 0.14 -1.82 16 17 C -0.06 -1.38 4.47 -19.85 -0.09 -1.47 16 18 C -0.13 -2.68 9.68 22.27 0.22 -2.46 16 19 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 20 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 21 C -0.11 -2.06 9.79 22.28 0.22 -1.84 16 22 C -0.04 -0.86 4.01 22.31 0.09 -0.77 16 23 Br -0.05 -1.02 25.65 -20.37 -0.52 -1.54 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 27 H 0.33 13.86 6.88 -89.69 -0.62 13.24 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.03 6.47 -2.39 -0.02 1.02 16 31 H 0.06 1.57 5.79 -2.39 -0.01 1.55 16 32 H 0.38 7.07 8.32 -74.06 -0.62 6.46 16 33 H 0.08 1.92 6.89 -2.39 -0.02 1.91 16 34 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 35 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -65.80 321.33 0.10 -65.70 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.16 Total: 21.10 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 2.99 Total: -27.14 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -3.07 Total: -90.07 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -1.16 Total: -14.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.52 Total: -1.54 kcal Total: -65.80 0.10 -65.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.536 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds