Wall clock time and date at job start Tue Mar 31 2020 15:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00035 * 2 1 4 4 H 1.48501 * 109.47143 * 239.99596 * 3 2 1 5 5 H 1.48501 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47277 * 119.99680 * 3 2 1 7 7 C 1.37875 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00507 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47445 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00396 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47194 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47350 * 304.99732 * 12 11 10 14 14 C 1.53001 * 109.47338 * 65.00167 * 12 11 10 15 15 O 1.42902 * 109.47002 * 184.99888 * 14 12 11 16 16 C 1.52999 * 109.47120 * 185.00267 * 12 11 10 17 17 C 1.50706 * 109.47471 * 174.99824 * 16 12 11 18 18 C 1.38246 * 119.98627 * 89.99645 * 17 16 12 19 19 C 1.38215 * 120.00645 * 179.97438 * 18 17 16 20 20 C 1.38330 * 119.99171 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 120.00875 * 179.97438 * 20 19 18 22 22 C 1.38320 * 119.97711 * 0.24881 * 20 19 18 23 23 C 1.38218 * 119.99423 * 359.49721 * 22 20 19 24 24 H 0.96996 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46781 * 60.00335 * 9 7 2 26 26 H 1.08993 * 109.47330 * 300.00028 * 9 7 2 27 27 H 1.00901 * 110.99477 * 56.04648 * 10 9 7 28 28 H 1.09001 * 109.46802 * 60.00411 * 11 10 9 29 29 H 1.09001 * 109.47135 * 300.00619 * 11 10 9 30 30 H 1.09001 * 109.46665 * 305.00089 * 14 12 11 31 31 H 1.09001 * 109.47033 * 64.99632 * 14 12 11 32 32 H 0.96703 * 113.99544 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47288 * 55.00028 * 16 12 11 34 34 H 1.08994 * 109.47135 * 294.99814 * 16 12 11 35 35 H 1.07998 * 119.99757 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.00646 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.00538 * 179.74526 * 22 20 19 38 38 H 1.07996 * 120.00188 * 180.25485 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5301 -6.0430 0.0018 13 1 3.2112 -5.9184 -0.8401 14 6 3.3243 -6.0127 1.3092 15 8 4.3579 -6.9985 1.2616 16 6 1.8048 -7.3844 -0.1234 17 6 2.8176 -8.4936 -0.2463 18 6 3.2963 -9.1211 0.8887 19 6 4.2248 -10.1388 0.7764 20 6 4.6753 -10.5291 -0.4719 21 35 5.9461 -11.9210 -0.6261 22 6 4.2002 -9.8972 -1.6069 23 6 3.2678 -8.8831 -1.4940 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8898 26 1 0.6240 -2.5567 0.8902 27 1 2.8404 -3.5487 0.7819 28 1 0.8801 -4.9818 -0.8887 29 1 0.8806 -4.9813 0.8913 30 1 3.7687 -5.0263 1.4414 31 1 2.6573 -6.2257 2.1445 32 1 4.9026 -7.0360 2.0597 33 1 1.1695 -7.3727 -1.0090 34 1 1.1909 -7.5495 0.7620 35 1 2.9443 -8.8166 1.8632 36 1 4.5991 -10.6287 1.6631 37 1 4.5547 -10.1988 -2.5815 38 1 2.8937 -8.3924 -2.3803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582905476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:58 Heat of formation + Delta-G solvation = -34.510155 kcal Electronic energy + Delta-G solvation = -19383.096746 eV Core-core repulsion = 16271.072261 eV Total energy + Delta-G solvation = -3112.024485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.69035 -37.59190 -35.54196 -33.96863 -32.59430 -31.39078 -31.05640 -29.44116 -26.76448 -25.75197 -24.10369 -22.85952 -21.71808 -20.98109 -19.91191 -17.44751 -16.64481 -16.31672 -15.95673 -15.29967 -14.90187 -14.88761 -14.45035 -13.94294 -13.56111 -13.39702 -13.18331 -13.11423 -12.66944 -12.42593 -11.92665 -11.65660 -11.52982 -11.19326 -11.17048 -10.92027 -10.85337 -10.69679 -10.55172 -10.40761 -10.35737 -9.93004 -9.86499 -9.23520 -8.92063 -8.51477 -8.41220 -7.36817 -6.06847 -4.09192 1.10369 1.34639 1.54877 3.31088 3.35170 3.38276 3.62307 4.33008 4.39813 4.68607 4.72510 4.85780 4.96441 5.09732 5.28706 5.30928 5.32583 5.36774 5.44219 5.56549 5.70159 5.79644 5.86086 5.89627 5.95795 6.10245 6.17014 6.23840 6.30173 6.47222 6.63540 6.83067 7.19230 7.35827 7.66066 7.73604 8.08112 8.31804 8.54925 8.99580 9.55934 11.04211 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.002106 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.048990 B =13291.481101 C =13476.636926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.691 5.691 11 C 0.064 3.936 12 C -0.078 4.078 13 H 0.087 0.913 14 C 0.076 3.924 15 O -0.559 6.559 16 C -0.078 4.078 17 C -0.043 4.043 18 C -0.060 4.060 19 C -0.101 4.101 20 C -0.094 4.094 21 Br -0.069 7.069 22 C -0.098 4.098 23 C -0.111 4.111 24 H 0.262 0.738 25 H 0.028 0.972 26 H -0.014 1.014 27 H 0.326 0.674 28 H 0.071 0.929 29 H 0.020 0.980 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.368 0.632 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -25.552 1.826 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.066 4.066 12 C -0.097 4.097 13 H 0.106 0.894 14 C -0.002 4.002 15 O -0.363 6.363 16 C -0.116 4.116 17 C -0.044 4.044 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.173 4.173 21 Br 0.016 6.984 22 C -0.117 4.117 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.004 0.996 27 H 0.144 0.856 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.214 0.786 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.841 -26.026 0.484 27.491 hybrid contribution 0.056 1.448 1.510 2.093 sum 8.897 -24.578 1.993 26.214 Atomic orbital electron populations 1.69949 1.06087 1.26962 1.50723 1.24992 0.94894 0.99398 0.95276 0.86533 0.79423 0.82600 0.78683 1.20109 1.21308 1.20266 1.21144 0.93472 0.90265 1.50616 0.92040 1.19552 0.90567 0.87338 0.95809 1.60736 1.21266 1.01300 1.48879 1.21885 0.94654 0.89783 1.00249 1.21228 0.97085 0.93220 0.98120 0.89427 1.22277 0.89340 0.91360 0.97202 1.86731 1.47479 1.58271 1.43859 1.20685 0.95774 0.92183 1.02936 1.19858 0.96510 0.95091 0.92926 1.20759 0.95567 0.93397 0.98198 1.20945 0.97818 0.97801 0.95513 1.21627 1.00489 0.98668 0.96533 1.96660 1.55863 1.47174 1.98717 1.20960 0.97278 0.96311 0.97191 1.21017 0.97432 0.96987 0.97585 0.92812 0.95359 0.99603 0.85619 0.91064 0.96216 0.93001 0.94256 0.78623 0.90580 0.91055 0.85984 0.85810 0.85671 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.52 9.32 -34.44 -0.32 -14.84 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 5.00 5.44 -4.98 -0.03 4.98 16 10 N -0.69 -14.30 6.49 -115.06 -0.75 -15.05 16 11 C 0.06 1.06 5.14 -3.83 -0.02 1.04 16 12 C -0.08 -1.03 2.43 -90.62 -0.22 -1.25 16 13 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.08 0.91 6.18 37.16 0.23 1.14 16 15 O -0.56 -6.06 9.05 -35.23 -0.32 -6.38 16 16 C -0.08 -0.87 4.84 -27.88 -0.13 -1.00 16 17 C -0.04 -0.48 4.26 -104.62 -0.45 -0.93 16 18 C -0.06 -0.62 6.62 -39.59 -0.26 -0.88 16 19 C -0.10 -1.03 9.79 -39.56 -0.39 -1.41 16 20 C -0.09 -1.02 6.22 -39.52 -0.25 -1.27 16 21 Br -0.07 -0.68 33.70 -68.01 -2.29 -2.97 16 22 C -0.10 -1.06 9.79 -39.56 -0.39 -1.45 16 23 C -0.11 -1.24 9.70 -39.59 -0.38 -1.62 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 27 H 0.33 6.41 6.88 -39.29 -0.27 6.14 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.68 6.47 -51.93 -0.34 0.34 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.37 2.67 9.12 45.56 0.42 3.09 16 33 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.12 1.09 7.80 -52.49 -0.41 0.68 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -30.62 334.16 -10.10 -40.72 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.79 Total: 4.02 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.70 Total: -16.01 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.01 Total: -40.94 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.32 Total: -6.38 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.62 -10.10 -40.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582905476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.211 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds