Wall clock time and date at job start Tue Mar 31 2020 15:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00035 * 2 1 4 4 H 1.48501 * 109.47143 * 239.99596 * 3 2 1 5 5 H 1.48501 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47277 * 119.99680 * 3 2 1 7 7 C 1.37875 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00507 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47445 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00396 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47194 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47350 * 304.99732 * 12 11 10 14 14 C 1.53001 * 109.47338 * 65.00167 * 12 11 10 15 15 O 1.42902 * 109.47002 * 184.99888 * 14 12 11 16 16 C 1.52999 * 109.47120 * 185.00267 * 12 11 10 17 17 C 1.50706 * 109.47471 * 174.99824 * 16 12 11 18 18 C 1.38246 * 119.98627 * 89.99645 * 17 16 12 19 19 C 1.38215 * 120.00645 * 179.97438 * 18 17 16 20 20 C 1.38330 * 119.99171 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 120.00875 * 179.97438 * 20 19 18 22 22 C 1.38320 * 119.97711 * 0.24881 * 20 19 18 23 23 C 1.38218 * 119.99423 * 359.49721 * 22 20 19 24 24 H 0.96996 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46781 * 60.00335 * 9 7 2 26 26 H 1.08993 * 109.47330 * 300.00028 * 9 7 2 27 27 H 1.00901 * 110.99477 * 56.04648 * 10 9 7 28 28 H 1.09001 * 109.46802 * 60.00411 * 11 10 9 29 29 H 1.09001 * 109.47135 * 300.00619 * 11 10 9 30 30 H 1.09001 * 109.46665 * 305.00089 * 14 12 11 31 31 H 1.09001 * 109.47033 * 64.99632 * 14 12 11 32 32 H 0.96703 * 113.99544 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47288 * 55.00028 * 16 12 11 34 34 H 1.08994 * 109.47135 * 294.99814 * 16 12 11 35 35 H 1.07998 * 119.99757 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.00646 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.00538 * 179.74526 * 22 20 19 38 38 H 1.07996 * 120.00188 * 180.25485 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5301 -6.0430 0.0018 13 1 3.2112 -5.9184 -0.8401 14 6 3.3243 -6.0127 1.3092 15 8 4.3579 -6.9985 1.2616 16 6 1.8048 -7.3844 -0.1234 17 6 2.8176 -8.4936 -0.2463 18 6 3.2963 -9.1211 0.8887 19 6 4.2248 -10.1388 0.7764 20 6 4.6753 -10.5291 -0.4719 21 35 5.9461 -11.9210 -0.6261 22 6 4.2002 -9.8972 -1.6069 23 6 3.2678 -8.8831 -1.4940 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8898 26 1 0.6240 -2.5567 0.8902 27 1 2.8404 -3.5487 0.7819 28 1 0.8801 -4.9818 -0.8887 29 1 0.8806 -4.9813 0.8913 30 1 3.7687 -5.0263 1.4414 31 1 2.6573 -6.2257 2.1445 32 1 4.9026 -7.0360 2.0597 33 1 1.1695 -7.3727 -1.0090 34 1 1.1909 -7.5495 0.7620 35 1 2.9443 -8.8166 1.8632 36 1 4.5991 -10.6287 1.6631 37 1 4.5547 -10.1988 -2.5815 38 1 2.8937 -8.3924 -2.3803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582905476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:57 Heat of formation + Delta-G solvation = -54.213059 kcal Electronic energy + Delta-G solvation = -19383.951128 eV Core-core repulsion = 16271.072261 eV Total energy + Delta-G solvation = -3112.878867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54170 -38.64984 -36.87176 -35.30748 -34.25297 -32.55951 -31.84429 -30.50099 -28.52054 -26.66888 -25.59857 -23.65605 -23.50421 -22.05967 -20.97281 -18.75014 -18.08300 -17.45809 -16.93034 -16.72226 -16.14879 -16.08689 -15.71854 -15.22659 -14.70718 -14.59500 -14.28608 -14.15861 -13.97728 -13.59005 -13.38987 -13.10498 -12.95006 -12.63134 -12.54592 -12.22396 -12.10216 -12.02595 -11.75564 -11.58732 -11.38099 -11.23021 -11.18381 -10.76593 -10.65961 -9.71739 -9.25637 -9.11349 -8.23184 -6.34460 0.28175 0.55102 0.75254 1.41216 1.44532 1.52562 2.39631 2.80044 3.10147 3.39673 3.57907 3.82894 3.95083 4.09557 4.12429 4.15799 4.45324 4.45524 4.55964 4.61036 4.71102 4.78967 4.82769 4.89738 4.94247 5.07367 5.12841 5.20494 5.27009 5.37189 5.37880 5.42900 5.61027 5.79765 6.01556 6.04059 6.43295 6.71907 6.88153 6.97510 7.36599 8.88083 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.002106 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.048990 B =13291.481101 C =13476.636926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.692 5.692 11 C 0.066 3.934 12 C -0.067 4.067 13 H 0.067 0.933 14 C 0.083 3.917 15 O -0.564 6.564 16 C -0.072 4.072 17 C -0.054 4.054 18 C -0.059 4.059 19 C -0.103 4.103 20 C -0.105 4.105 21 Br -0.063 7.063 22 C -0.107 4.107 23 C -0.123 4.123 24 H 0.266 0.734 25 H 0.000 1.000 26 H -0.036 1.036 27 H 0.334 0.666 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -26.043 2.636 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.324 5.324 11 C -0.064 4.064 12 C -0.086 4.086 13 H 0.086 0.914 14 C 0.005 3.995 15 O -0.371 6.371 16 C -0.109 4.109 17 C -0.054 4.054 18 C -0.077 4.077 19 C -0.123 4.123 20 C -0.184 4.184 21 Br 0.022 6.978 22 C -0.127 4.127 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.018 0.982 26 H -0.019 1.019 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.971 -26.547 1.307 28.388 hybrid contribution -0.271 1.505 1.252 1.976 sum 9.700 -25.042 2.558 26.977 Atomic orbital electron populations 1.70075 1.07756 1.28100 1.51378 1.25943 0.95799 1.03354 0.94563 0.85399 0.78131 0.77695 0.79161 1.19463 1.20767 1.18999 1.21523 0.93776 0.91538 1.50804 0.91865 1.19195 0.90624 0.88837 0.93311 1.60590 1.20616 1.01730 1.49432 1.21935 0.95469 0.88797 1.00156 1.21030 0.96124 0.93039 0.98357 0.91412 1.22100 0.89721 0.91007 0.96683 1.86691 1.47522 1.57567 1.45323 1.20610 0.95757 0.90804 1.03758 1.19897 0.96818 0.95367 0.93327 1.20933 0.95190 0.93052 0.98564 1.21167 0.97595 0.97708 0.95848 1.21820 1.00743 0.98944 0.96901 1.96661 1.55581 1.46822 1.98735 1.21119 0.97399 0.96412 0.97795 1.21185 0.97698 0.97281 0.98021 0.92572 0.98228 1.01869 0.84742 0.91781 0.95592 0.94459 0.92617 0.76573 0.90345 0.89728 0.84423 0.84242 0.84870 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.55 9.32 25.60 0.24 -30.31 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.21 11.03 5.44 85.55 0.47 11.49 16 10 N -0.69 -28.95 6.49 -517.95 -3.36 -32.31 16 11 C 0.07 2.17 5.14 86.30 0.44 2.61 16 12 C -0.07 -1.71 2.43 -10.80 -0.03 -1.73 16 13 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 14 C 0.08 1.84 6.18 71.98 0.44 2.28 16 15 O -0.56 -10.98 9.05 -148.98 -1.35 -12.33 16 16 C -0.07 -1.48 4.84 29.85 0.14 -1.34 16 17 C -0.05 -1.11 4.26 -19.86 -0.08 -1.19 16 18 C -0.06 -1.07 6.62 22.27 0.15 -0.92 16 19 C -0.10 -1.89 9.79 22.29 0.22 -1.67 16 20 C -0.10 -2.12 6.22 22.31 0.14 -1.98 16 21 Br -0.06 -1.16 33.70 -20.37 -0.69 -1.84 16 22 C -0.11 -2.22 9.79 22.28 0.22 -2.00 16 23 C -0.12 -2.61 9.70 22.27 0.22 -2.40 16 24 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 26 H -0.04 -2.05 8.14 -2.39 -0.02 -2.07 16 27 H 0.33 13.11 6.88 -89.69 -0.62 12.49 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.93 6.47 -2.39 -0.02 0.92 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.39 4.58 9.12 -74.06 -0.68 3.90 16 33 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 34 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 35 H 0.14 2.03 7.80 -2.91 -0.02 2.01 16 36 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -65.24 334.16 -0.29 -65.52 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.23 Total: 17.32 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.03 Total: -26.60 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -3.08 Total: -88.03 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -1.35 Total: -12.33 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -0.69 Total: -1.84 kcal Total: -65.24 -0.29 -65.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582905476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.311 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds