Wall clock time and date at job start Tue Mar 31 2020 16:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34901 * 119.99863 * 2 1 4 4 C 1.47090 * 119.99803 * 174.53345 * 3 2 1 5 5 C 1.39980 * 120.19224 * 296.49355 * 4 3 2 6 6 Cl 1.73602 * 120.09847 * 0.02562 * 5 4 3 7 7 C 1.38020 * 119.80690 * 179.76711 * 5 4 3 8 8 C 1.38380 * 120.18740 * 0.48864 * 7 5 4 9 9 C 1.38376 * 120.39042 * 359.78429 * 8 7 5 10 10 C 1.38024 * 120.18924 * 359.96040 * 9 8 7 11 11 Cl 1.73604 * 120.09862 * 179.97438 * 10 9 8 12 12 C 1.46337 * 120.00253 * 180.02562 * 2 1 3 13 13 O 1.21704 * 120.00241 * 281.40890 * 12 2 1 14 14 N 1.34783 * 119.99607 * 101.40255 * 12 2 1 15 15 C 1.46496 * 120.00408 * 4.25974 * 14 12 2 16 16 C 1.46502 * 119.99525 * 184.26078 * 14 12 2 17 17 C 1.50705 * 109.47335 * 90.00206 * 16 14 12 18 18 H 1.08006 * 119.99732 * 359.97438 * 17 16 14 19 19 C 1.37873 * 120.00184 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47466 * 89.99591 * 21 19 17 23 23 H 1.48503 * 109.46930 * 209.99788 * 21 19 17 24 24 H 1.48498 * 109.46916 * 329.99210 * 21 19 17 25 25 H 1.09008 * 109.46972 * 84.96704 * 1 2 3 26 26 H 1.09002 * 109.47017 * 204.96578 * 1 2 3 27 27 H 1.08995 * 109.47631 * 324.96941 * 1 2 3 28 28 H 1.07996 * 119.99941 * 354.26613 * 3 2 1 29 29 H 1.07998 * 119.91167 * 180.25619 * 7 5 4 30 30 H 1.08002 * 119.80489 * 179.76572 * 8 7 5 31 31 H 1.08004 * 119.90601 * 179.97438 * 9 8 7 32 32 H 1.09006 * 109.46702 * 95.02345 * 15 14 12 33 33 H 1.08999 * 109.47011 * 215.01940 * 15 14 12 34 34 H 1.09003 * 109.47076 * 335.02227 * 15 14 12 35 35 H 1.09000 * 109.47086 * 209.99995 * 16 14 12 36 36 H 1.09005 * 109.47133 * 330.00096 * 16 14 12 37 37 H 0.97001 * 119.99674 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1814 1.1683 0.0000 4 6 3.6473 1.1712 0.1214 5 6 4.2585 0.6850 1.2831 6 17 3.2884 0.0751 2.5872 7 6 5.6348 0.6870 1.3865 8 6 6.4098 1.1771 0.3501 9 6 5.8138 1.6648 -0.7996 10 6 4.4390 1.6655 -0.9220 11 17 3.6938 2.2786 -2.3651 12 6 2.2387 -1.2673 -0.0006 13 8 2.3625 -1.8990 1.0323 14 7 2.7755 -1.7349 -1.1450 15 6 2.7077 -0.9312 -2.3680 16 6 3.4268 -3.0470 -1.1660 17 6 2.4107 -4.1070 -1.5053 18 1 1.3824 -3.8308 -1.6868 19 6 2.7934 -5.4292 -1.5831 20 7 4.0455 -5.7655 -1.3615 21 14 1.5341 -6.7429 -2.0044 22 1 1.4858 -6.9283 -3.4769 23 1 1.9183 -8.0228 -1.3566 24 1 0.1969 -6.3220 -1.5143 25 1 -0.3633 0.0902 -1.0238 26 1 -0.3633 -0.9317 0.4338 27 1 -0.3634 0.8414 0.5898 28 1 1.6455 2.1012 -0.0934 29 1 6.1082 0.3085 2.2803 30 1 7.4861 1.1792 0.4392 31 1 6.4262 2.0459 -1.6035 32 1 3.6278 -0.3570 -2.4768 33 1 2.5859 -1.5889 -3.2286 34 1 1.8589 -0.2499 -2.3084 35 1 4.2175 -3.0483 -1.9163 36 1 3.8557 -3.2554 -0.1858 37 1 4.3148 -6.6957 -1.4166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588476087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:13 Heat of formation + Delta-G solvation = -0.514303 kcal Electronic energy + Delta-G solvation = -23850.584947 eV Core-core repulsion = 20259.338389 eV Total energy + Delta-G solvation = -3591.246558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82348 -38.62970 -36.65775 -36.03822 -34.73830 -34.63094 -32.46341 -31.14609 -30.64395 -27.83679 -26.70112 -25.78397 -23.78088 -22.72554 -22.29646 -20.71670 -17.95713 -17.13683 -16.48923 -16.14560 -15.87884 -15.55258 -14.94728 -14.80211 -14.32893 -14.25634 -13.73298 -13.33142 -13.22738 -12.99911 -12.60409 -12.48342 -12.08173 -11.99258 -11.85026 -11.81584 -11.66014 -11.53176 -11.17682 -10.92675 -10.88214 -10.85480 -10.59897 -10.53161 -10.12897 -9.58076 -9.30595 -8.91194 -8.64563 -8.41966 -8.34234 -7.52687 -6.01629 -4.06304 0.85406 1.00868 1.89446 1.93245 2.44158 3.31170 3.37408 3.40359 3.41617 3.48877 4.11085 4.46832 4.51673 4.73589 4.95015 5.09531 5.11437 5.30091 5.33317 5.37048 5.58388 5.65910 5.68683 5.79911 5.92292 5.98407 6.06210 6.08546 6.15403 6.31231 6.37465 6.50202 6.64384 7.12246 7.49572 7.59971 7.95257 8.26877 8.47863 8.92952 9.14065 9.58687 11.06275 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.004786 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.541615 B = 5848.502910 C = 6072.461826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.124 4.124 4 C -0.038 4.038 5 C -0.010 4.010 6 Cl -0.028 7.028 7 C -0.107 4.107 8 C -0.096 4.096 9 C -0.112 4.112 10 C -0.014 4.014 11 Cl -0.057 7.057 12 C 0.537 3.463 13 O -0.522 6.522 14 N -0.592 5.592 15 C 0.085 3.915 16 C 0.249 3.751 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.044 0.956 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 19.281 0.950 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.039 4.039 5 C -0.038 4.038 6 Cl 0.002 6.998 7 C -0.126 4.126 8 C -0.114 4.114 9 C -0.131 4.131 10 C -0.041 4.041 11 Cl -0.028 7.028 12 C 0.322 3.678 13 O -0.399 6.399 14 N -0.324 5.324 15 C -0.060 4.060 16 C 0.130 3.870 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.270 18.746 1.483 18.847 hybrid contribution -0.721 -0.807 -0.456 1.174 sum 0.548 17.939 1.027 17.977 Atomic orbital electron populations 1.20727 0.89665 1.03563 1.02526 1.22220 0.97062 0.93692 0.96933 1.21562 0.90637 0.97616 1.04487 1.18627 0.93967 0.99368 0.91962 1.21145 0.92199 0.99393 0.91033 1.98435 1.70402 1.85005 1.45963 1.21106 0.91483 0.99618 1.00385 1.21098 1.00293 0.97653 0.92376 1.21016 0.92393 1.00746 0.98943 1.20890 0.92639 1.01893 0.88693 1.98364 1.82792 1.85628 1.35994 1.18050 0.80106 0.85085 0.84523 1.90835 1.59326 1.58584 1.31166 1.48060 1.56267 1.20306 1.07755 1.21697 1.00352 0.95299 0.88612 1.19238 0.92584 0.76634 0.98586 1.21438 0.95620 0.91692 1.47612 0.92506 1.24926 0.95400 0.98441 0.95299 1.69940 1.15955 1.18008 1.49449 0.86515 0.81667 0.81074 0.78281 1.20665 1.21105 1.19910 0.90610 0.90678 0.90986 0.84588 0.84376 0.84317 0.84448 0.93742 0.91282 0.92386 0.95262 0.93793 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.03 36.00 0.36 -1.08 16 2 C -0.10 -1.56 3.26 -102.55 -0.33 -1.89 16 3 C -0.12 -1.75 7.37 -37.18 -0.27 -2.02 16 4 C -0.04 -0.55 4.78 -105.00 -0.50 -1.06 16 5 C -0.01 -0.16 5.78 -39.01 -0.23 -0.39 16 6 Cl -0.03 -0.46 24.42 -51.86 -1.27 -1.73 16 7 C -0.11 -1.42 9.81 -39.61 -0.39 -1.81 16 8 C -0.10 -1.07 10.04 -39.48 -0.40 -1.47 16 9 C -0.11 -1.28 9.81 -39.61 -0.39 -1.67 16 10 C -0.01 -0.19 5.59 -39.00 -0.22 -0.40 16 11 Cl -0.06 -0.66 26.71 -51.86 -1.39 -2.04 16 12 C 0.54 11.40 5.11 -13.00 -0.07 11.34 16 13 O -0.52 -13.02 14.04 5.19 0.07 -12.95 16 14 N -0.59 -13.02 2.86 -184.63 -0.53 -13.54 16 15 C 0.08 1.49 9.92 59.84 0.59 2.09 16 16 C 0.25 6.64 5.22 -5.19 -0.03 6.62 16 17 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 18 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 21 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.04 0.73 6.09 -51.93 -0.32 0.41 16 33 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 34 H 0.06 0.89 6.52 -51.93 -0.34 0.55 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -33.16 342.58 -8.89 -42.05 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.38 Total: -2.45 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.29 Total: -5.44 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.21 Total: -39.64 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -2.65 Total: -3.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.16 -8.89 -42.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588476087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.540 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds