Wall clock time and date at job start Tue Mar 31 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20765 * 119.99933 * 2 1 4 4 C 1.50697 * 119.99996 * 179.97438 * 2 1 3 5 5 S 1.81398 * 109.47173 * 179.97438 * 4 2 1 6 6 C 1.81390 * 103.00227 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47565 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99562 * 354.97033 * 7 6 5 9 9 N 1.34774 * 120.00690 * 174.96598 * 7 6 5 10 10 C 1.37139 * 119.99557 * 3.81024 * 9 7 6 11 11 H 1.07999 * 120.00162 * 306.74166 * 10 9 7 12 12 C 1.38886 * 120.00015 * 126.74377 * 10 9 7 13 13 N 1.31421 * 119.99855 * 3.02777 * 12 10 9 14 14 Si 1.86802 * 119.99999 * 183.02649 * 12 10 9 15 15 H 1.48500 * 109.46859 * 90.00390 * 14 12 10 16 16 H 1.48498 * 109.47020 * 209.99818 * 14 12 10 17 17 H 1.48495 * 109.47028 * 330.00294 * 14 12 10 18 18 C 1.39802 * 120.00328 * 183.80406 * 9 7 6 19 19 C 1.38967 * 120.06281 * 171.68060 * 18 9 7 20 20 C 1.38070 * 119.93377 * 180.30389 * 19 18 9 21 21 C 1.38426 * 120.06235 * 359.44397 * 20 19 18 22 22 Cl 1.73602 * 119.93265 * 180.27679 * 21 20 19 23 23 C 1.38417 * 120.12983 * 0.55673 * 21 20 19 24 24 C 1.38069 * 120.06549 * 359.72492 * 23 21 20 25 25 H 1.09005 * 109.47107 * 270.00044 * 1 2 3 26 26 H 1.09000 * 109.46992 * 30.00104 * 1 2 3 27 27 H 1.08995 * 109.46893 * 150.00470 * 1 2 3 28 28 H 1.09003 * 109.46748 * 60.00317 * 4 2 1 29 29 H 1.08999 * 109.47195 * 299.99907 * 4 2 1 30 30 H 1.09005 * 109.47345 * 60.00268 * 6 5 4 31 31 H 1.09005 * 109.47564 * 299.99925 * 6 5 4 32 32 H 0.97003 * 119.99909 * 185.00153 * 13 12 10 33 33 H 1.07993 * 120.03186 * 0.02562 * 19 18 9 34 34 H 1.07997 * 119.96960 * 179.71970 * 20 19 18 35 35 H 1.08000 * 119.96548 * 179.70279 * 23 21 20 36 36 H 1.08001 * 120.03497 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 16 4.0440 -0.9736 -0.0003 6 6 4.7681 -2.6367 -0.0003 7 6 6.2714 -2.5301 -0.0004 8 8 6.8022 -1.4435 -0.0926 9 7 7.0259 -3.6421 0.1020 10 6 6.4283 -4.8762 0.1276 11 1 5.6447 -5.0821 0.8418 12 6 6.8308 -5.8613 -0.7648 13 7 7.8244 -5.6309 -1.5936 14 14 5.9600 -7.5138 -0.7871 15 1 4.8240 -7.4618 -1.7421 16 1 6.9140 -8.5704 -1.2098 17 1 5.4497 -7.8227 0.5728 18 6 8.4177 -3.5377 0.1821 19 6 9.1854 -4.6621 0.4605 20 6 10.5593 -4.5546 0.5451 21 6 11.1730 -3.3307 0.3416 22 17 12.9012 -3.2008 0.4417 23 6 10.4109 -2.2090 0.0641 24 6 9.0362 -2.3092 -0.0160 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5137 28 1 1.9972 -1.8770 -0.8892 29 1 1.9972 -1.8762 0.8908 30 1 4.4417 -3.1752 -0.8900 31 1 4.4425 -3.1748 0.8900 32 1 8.0585 -6.2904 -2.2654 33 1 8.7075 -5.6181 0.6150 34 1 11.1561 -5.4272 0.7660 35 1 10.8921 -1.2544 -0.0895 36 1 8.4421 -1.4335 -0.2322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592650565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:32 Heat of formation + Delta-G solvation = -30.306622 kcal Electronic energy + Delta-G solvation = -22434.291130 eV Core-core repulsion = 18843.796386 eV Total energy + Delta-G solvation = -3590.494743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.88845 -39.36096 -37.52243 -35.83777 -34.97014 -32.09397 -31.66274 -30.31325 -29.87470 -28.50070 -27.70060 -25.34763 -22.09863 -21.54707 -20.20969 -19.57611 -18.00518 -16.60759 -16.29021 -15.95967 -15.86880 -15.73556 -15.50778 -14.80973 -14.55604 -14.49596 -13.83259 -13.41425 -13.32757 -13.02703 -12.78674 -12.76102 -12.54768 -12.28542 -12.16497 -12.09171 -11.89745 -11.63134 -11.25803 -11.20572 -10.82040 -10.64699 -10.55573 -10.11297 -9.92717 -9.64855 -9.36523 -8.84079 -8.44594 -8.01660 -7.36571 -7.03024 -6.48938 -4.70032 1.62856 1.80246 2.09648 2.37175 2.75989 2.91271 2.92769 3.00188 3.03633 3.47937 3.81103 3.87393 4.30600 4.58363 4.79318 4.88649 4.89591 5.16900 5.17497 5.22439 5.48862 5.57226 5.67952 5.77113 5.78196 5.91462 6.40557 6.44905 6.64416 6.91494 7.05670 7.10574 7.29092 7.32468 7.44994 7.50532 7.86043 8.19831 8.65173 8.98539 9.38046 10.31632 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.003647 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.042026 B = 7675.464465 C = 9734.061015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.369 3.631 3 O -0.435 6.435 4 C -0.179 4.179 5 S -0.152 6.152 6 C -0.106 4.106 7 C 0.510 3.490 8 O -0.542 6.542 9 N -0.380 5.380 10 C -0.376 4.376 11 H 0.096 0.904 12 C 0.056 3.944 13 N -0.838 5.838 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.265 1.265 18 C 0.197 3.803 19 C -0.079 4.079 20 C -0.110 4.110 21 C -0.078 4.078 22 Cl -0.112 7.112 23 C -0.105 4.105 24 C -0.178 4.178 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.278 0.722 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 0.661 2.694 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.242 3.758 3 O -0.306 6.306 4 C -0.327 4.327 5 S 0.074 5.926 6 C -0.257 4.257 7 C 0.300 3.700 8 O -0.425 6.425 9 N -0.088 5.088 10 C -0.503 4.503 11 H 0.113 0.887 12 C -0.155 4.155 13 N -0.469 5.469 14 Si 0.744 3.256 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.189 1.189 18 C 0.099 3.901 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.105 4.105 22 Cl -0.084 7.084 23 C -0.125 4.125 24 C -0.198 4.198 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.125 2.598 2.517 8.894 hybrid contribution -0.826 -2.698 -0.297 2.838 sum -8.951 -0.100 2.220 9.223 Atomic orbital electron populations 1.22226 0.93334 1.04960 1.04818 1.23974 0.91761 0.88869 0.71229 1.90478 1.71557 1.34404 1.34211 1.24200 0.99330 1.02047 1.07138 1.87907 0.97219 1.09360 1.98096 1.23365 0.97361 0.97753 1.07207 1.19894 0.87724 0.84155 0.78199 1.90280 1.72015 1.28346 1.51839 1.40933 1.02409 1.06021 1.59455 1.19394 1.22173 0.88148 1.20552 0.88662 1.25647 0.94922 1.00235 0.94683 1.69971 1.23741 1.36599 1.16557 0.86044 0.79364 0.80977 0.79240 1.19791 1.20314 1.18936 1.18202 0.84098 0.93253 0.94549 1.20688 0.91406 0.98548 0.99375 1.20610 0.94496 0.95278 1.02628 1.20696 0.82027 0.96124 1.11694 1.98275 1.14235 1.98509 1.97374 1.20760 0.93590 0.96545 1.01609 1.22645 0.93967 1.00065 1.03079 0.88495 0.89401 0.89550 0.86886 0.86938 0.87043 0.87808 0.91137 0.84831 0.86646 0.86542 0.80373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 10.25 36.01 0.37 -0.86 16 2 C 0.37 4.08 7.29 -29.03 -0.21 3.87 16 3 O -0.43 -6.84 16.61 5.99 0.10 -6.74 16 4 C -0.18 -1.95 6.35 36.00 0.23 -1.72 16 5 S -0.15 -2.58 20.02 -107.50 -2.15 -4.73 16 6 C -0.11 -1.86 5.25 36.01 0.19 -1.67 16 7 C 0.51 11.33 7.59 -10.99 -0.08 11.25 16 8 O -0.54 -13.04 12.29 5.55 0.07 -12.98 16 9 N -0.38 -8.88 2.70 -58.97 -0.16 -9.04 16 10 C -0.38 -8.39 7.53 -14.94 -0.11 -8.50 16 11 H 0.10 1.97 7.43 -52.49 -0.39 1.58 16 12 C 0.06 1.25 4.13 -17.49 -0.07 1.18 16 13 N -0.84 -20.38 10.88 55.49 0.60 -19.78 16 14 Si 0.92 17.17 29.56 -169.99 -5.02 12.14 16 15 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 16 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 17 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 18 C 0.20 4.68 5.70 -83.69 -0.48 4.20 16 19 C -0.08 -1.78 7.53 -39.37 -0.30 -2.08 16 20 C -0.11 -2.27 9.82 -39.57 -0.39 -2.66 16 21 C -0.08 -1.57 6.32 -39.45 -0.25 -1.82 16 22 Cl -0.11 -1.94 28.95 -51.86 -1.50 -3.45 16 23 C -0.11 -2.19 9.82 -39.58 -0.39 -2.58 16 24 C -0.18 -4.10 9.03 -39.38 -0.36 -4.45 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.11 1.86 8.14 -51.92 -0.42 1.44 16 31 H 0.10 1.61 7.72 -51.92 -0.40 1.21 16 32 H 0.28 6.46 8.32 -40.82 -0.34 6.12 16 33 H 0.13 3.08 5.90 -52.49 -0.31 2.77 16 34 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.18 4.30 4.57 -56.03 -0.26 4.04 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -28.80 337.82 -8.70 -37.50 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -3.87 Total: 7.83 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.85 Total: -5.85 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.44 Total: -28.81 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.17 Total: -19.72 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.02 Total: 12.14 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -2.15 Total: -4.73 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.50 Total: -3.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.80 -8.70 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592650565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.194 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds