Wall clock time and date at job start Tue Mar 31 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20765 * 119.99933 * 2 1 4 4 C 1.50697 * 119.99996 * 179.97438 * 2 1 3 5 5 S 1.81398 * 109.47173 * 179.97438 * 4 2 1 6 6 C 1.81390 * 103.00227 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47565 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99562 * 354.97033 * 7 6 5 9 9 N 1.34774 * 120.00690 * 174.96598 * 7 6 5 10 10 C 1.37139 * 119.99557 * 3.81024 * 9 7 6 11 11 H 1.07999 * 120.00162 * 306.74166 * 10 9 7 12 12 C 1.38886 * 120.00015 * 126.74377 * 10 9 7 13 13 N 1.31421 * 119.99855 * 3.02777 * 12 10 9 14 14 Si 1.86802 * 119.99999 * 183.02649 * 12 10 9 15 15 H 1.48500 * 109.46859 * 90.00390 * 14 12 10 16 16 H 1.48498 * 109.47020 * 209.99818 * 14 12 10 17 17 H 1.48495 * 109.47028 * 330.00294 * 14 12 10 18 18 C 1.39802 * 120.00328 * 183.80406 * 9 7 6 19 19 C 1.38967 * 120.06281 * 171.68060 * 18 9 7 20 20 C 1.38070 * 119.93377 * 180.30389 * 19 18 9 21 21 C 1.38426 * 120.06235 * 359.44397 * 20 19 18 22 22 Cl 1.73602 * 119.93265 * 180.27679 * 21 20 19 23 23 C 1.38417 * 120.12983 * 0.55673 * 21 20 19 24 24 C 1.38069 * 120.06549 * 359.72492 * 23 21 20 25 25 H 1.09005 * 109.47107 * 270.00044 * 1 2 3 26 26 H 1.09000 * 109.46992 * 30.00104 * 1 2 3 27 27 H 1.08995 * 109.46893 * 150.00470 * 1 2 3 28 28 H 1.09003 * 109.46748 * 60.00317 * 4 2 1 29 29 H 1.08999 * 109.47195 * 299.99907 * 4 2 1 30 30 H 1.09005 * 109.47345 * 60.00268 * 6 5 4 31 31 H 1.09005 * 109.47564 * 299.99925 * 6 5 4 32 32 H 0.97003 * 119.99909 * 185.00153 * 13 12 10 33 33 H 1.07993 * 120.03186 * 0.02562 * 19 18 9 34 34 H 1.07997 * 119.96960 * 179.71970 * 20 19 18 35 35 H 1.08000 * 119.96548 * 179.70279 * 23 21 20 36 36 H 1.08001 * 120.03497 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 16 4.0440 -0.9736 -0.0003 6 6 4.7681 -2.6367 -0.0003 7 6 6.2714 -2.5301 -0.0004 8 8 6.8022 -1.4435 -0.0926 9 7 7.0259 -3.6421 0.1020 10 6 6.4283 -4.8762 0.1276 11 1 5.6447 -5.0821 0.8418 12 6 6.8308 -5.8613 -0.7648 13 7 7.8244 -5.6309 -1.5936 14 14 5.9600 -7.5138 -0.7871 15 1 4.8240 -7.4618 -1.7421 16 1 6.9140 -8.5704 -1.2098 17 1 5.4497 -7.8227 0.5728 18 6 8.4177 -3.5377 0.1821 19 6 9.1854 -4.6621 0.4605 20 6 10.5593 -4.5546 0.5451 21 6 11.1730 -3.3307 0.3416 22 17 12.9012 -3.2008 0.4417 23 6 10.4109 -2.2090 0.0641 24 6 9.0362 -2.3092 -0.0160 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5137 28 1 1.9972 -1.8770 -0.8892 29 1 1.9972 -1.8762 0.8908 30 1 4.4417 -3.1752 -0.8900 31 1 4.4425 -3.1748 0.8900 32 1 8.0585 -6.2904 -2.2654 33 1 8.7075 -5.6181 0.6150 34 1 11.1561 -5.4272 0.7660 35 1 10.8921 -1.2544 -0.0895 36 1 8.4421 -1.4335 -0.2322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592650565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:32 Heat of formation + Delta-G solvation = -45.166508 kcal Electronic energy + Delta-G solvation = -22434.935503 eV Core-core repulsion = 18843.796386 eV Total energy + Delta-G solvation = -3591.139116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57910 -40.31452 -39.18863 -37.42858 -36.62368 -33.81933 -32.50961 -31.86594 -31.53259 -29.49878 -28.98957 -27.07142 -23.78254 -23.21183 -21.53506 -20.83141 -19.64164 -18.24799 -17.64082 -17.48498 -17.15519 -16.79926 -16.65468 -16.35904 -16.06922 -15.58181 -15.44183 -15.00242 -14.65118 -14.51028 -14.22640 -14.01889 -13.77895 -13.60380 -13.45678 -13.25366 -12.92665 -12.91815 -12.87108 -12.72897 -12.36944 -12.22933 -12.05780 -11.68951 -11.09214 -10.86014 -10.76453 -10.51287 -10.15507 -9.71461 -8.76337 -8.66179 -8.19096 -6.44969 0.40518 0.44919 0.66083 0.97111 1.34340 1.44153 1.49536 1.59437 1.60663 1.83504 2.24510 2.71175 2.89797 3.08247 3.18631 3.88128 4.14511 4.15567 4.17653 4.19927 4.22432 4.44655 4.48259 4.69393 4.72420 4.73734 4.74688 4.95629 5.21022 5.24088 5.34873 5.40469 5.57372 5.72726 5.82580 6.15123 6.45957 6.51740 6.94624 7.28049 7.68709 8.63213 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.003647 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.042026 B = 7675.464465 C = 9734.061015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.370 3.630 3 O -0.494 6.494 4 C -0.161 4.161 5 S -0.233 6.233 6 C -0.084 4.084 7 C 0.493 3.507 8 O -0.570 6.570 9 N -0.393 5.393 10 C -0.382 4.382 11 H 0.112 0.888 12 C 0.019 3.981 13 N -0.876 5.876 14 Si 0.987 3.013 15 H -0.267 1.267 16 H -0.287 1.287 17 H -0.252 1.252 18 C 0.172 3.828 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.079 4.079 22 Cl -0.082 7.082 23 C -0.105 4.105 24 C -0.199 4.199 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.275 0.725 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 -0.997 3.206 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.247 3.753 3 O -0.370 6.370 4 C -0.309 4.309 5 S -0.008 6.008 6 C -0.234 4.234 7 C 0.285 3.715 8 O -0.454 6.454 9 N -0.101 5.101 10 C -0.508 4.508 11 H 0.129 0.871 12 C -0.187 4.187 13 N -0.508 5.508 14 Si 0.809 3.191 15 H -0.192 1.192 16 H -0.213 1.213 17 H -0.176 1.176 18 C 0.074 3.926 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.107 4.107 22 Cl -0.053 7.053 23 C -0.124 4.124 24 C -0.219 4.219 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.889 0.929 3.045 10.389 hybrid contribution -0.242 -2.136 -0.436 2.193 sum -10.131 -1.207 2.609 10.531 Atomic orbital electron populations 1.22239 0.88961 1.06475 1.06527 1.24745 0.93905 0.87798 0.68877 1.90481 1.73029 1.36180 1.37297 1.24411 0.93375 1.03038 1.10043 1.88211 1.03788 1.10395 1.98357 1.23154 0.93926 0.97910 1.08423 1.20698 0.89791 0.83542 0.77495 1.90264 1.73083 1.29259 1.52808 1.41229 1.02521 1.06750 1.59598 1.19814 1.22191 0.87977 1.20861 0.87082 1.26426 0.95138 1.03237 0.93941 1.70113 1.25497 1.37698 1.17517 0.85015 0.77979 0.76373 0.79738 1.19221 1.21315 1.17551 1.18529 0.84917 0.93825 0.95314 1.20674 0.92291 0.97829 1.00254 1.20862 0.94007 0.96337 1.01556 1.20750 0.83728 0.95627 1.10586 1.98281 1.11416 1.98444 1.97201 1.20959 0.92903 0.97794 1.00766 1.22609 0.95055 0.99634 1.04596 0.86401 0.89404 0.86510 0.84063 0.83677 0.86223 0.85676 0.91496 0.85682 0.84368 0.84607 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 10.25 71.24 0.73 -0.96 16 2 C 0.37 7.53 7.29 29.10 0.21 7.74 16 3 O -0.49 -15.72 16.61 -1.47 -0.02 -15.74 16 4 C -0.16 -3.10 6.35 71.23 0.45 -2.65 16 5 S -0.23 -8.00 20.02 -56.49 -1.13 -9.13 16 6 C -0.08 -2.91 5.25 71.24 0.37 -2.54 16 7 C 0.49 22.53 7.59 87.66 0.67 23.19 16 8 O -0.57 -28.82 12.29 -3.05 -0.04 -28.86 16 9 N -0.39 -18.73 2.70 -458.88 -1.24 -19.97 16 10 C -0.38 -16.96 7.53 84.02 0.63 -16.32 16 11 H 0.11 4.43 7.43 -2.91 -0.02 4.41 16 12 C 0.02 0.86 4.13 84.91 0.35 1.21 16 13 N -0.88 -43.15 10.88 21.65 0.24 -42.92 16 14 Si 0.99 34.31 29.56 68.60 2.03 36.33 16 15 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 16 H -0.29 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.25 -8.15 7.11 99.48 0.71 -7.45 16 18 C 0.17 8.41 5.70 38.22 0.22 8.63 16 19 C -0.09 -4.09 7.53 22.40 0.17 -3.92 16 20 C -0.11 -4.39 9.82 22.27 0.22 -4.17 16 21 C -0.08 -3.13 6.32 22.36 0.14 -2.99 16 22 Cl -0.08 -2.69 28.95 -2.72 -0.08 -2.77 16 23 C -0.10 -4.38 9.82 22.27 0.22 -4.16 16 24 C -0.20 -9.50 9.03 22.40 0.20 -9.30 16 25 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 0.41 8.12 -2.39 -0.02 0.39 16 28 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.13 3.70 7.72 -2.39 -0.02 3.68 16 32 H 0.28 12.98 8.32 -92.71 -0.77 12.21 16 33 H 0.13 5.85 5.90 -2.91 -0.02 5.83 16 34 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 35 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.16 8.34 4.57 -59.00 -0.27 8.07 16 Total: -1.00 -66.24 337.82 5.19 -61.04 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.86 Total: 28.25 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.58 Total: -6.24 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -1.01 Total: -62.89 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.06 Total: -44.60 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.13 Total: -9.13 kcal Atomic # 17 Polarization: -2.69 SS G_CDS: -0.08 Total: -2.77 kcal Total: -66.24 5.19 -61.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592650565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.877 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds