Wall clock time and date at job start Tue Mar 31 2020 15:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47172 * 120.00124 * 3 2 1 6 6 H 1.48496 * 109.47259 * 240.00143 * 3 2 1 7 7 C 1.38942 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99706 * 203.03056 * 7 2 1 9 9 N 1.37091 * 120.00442 * 23.03069 * 7 2 1 10 10 C 1.34781 * 120.00258 * 43.14424 * 9 7 2 11 11 O 1.21296 * 119.99402 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46926 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47304 * 179.97438 * 13 12 10 15 15 C 1.38330 * 120.01276 * 269.73092 * 14 13 12 16 16 Cl 1.73595 * 120.00896 * 359.97438 * 15 14 13 17 17 C 1.38363 * 119.98151 * 179.69667 * 15 14 13 18 18 C 1.38224 * 120.01492 * 0.59357 * 17 15 14 19 19 C 1.38217 * 120.02642 * 359.67870 * 18 17 15 20 20 C 1.38337 * 120.01155 * 89.99585 * 14 13 12 21 21 Cl 1.73601 * 120.00356 * 359.97438 * 20 14 13 22 22 C 1.46508 * 120.00358 * 223.14930 * 9 7 2 23 23 C 1.53002 * 117.49453 * 8.25806 * 22 9 7 24 24 C 1.53004 * 60.00148 * 252.51359 * 23 22 9 25 25 H 0.96999 * 120.00137 * 186.13805 * 1 2 3 26 26 H 1.08997 * 109.46517 * 299.99567 * 12 10 9 27 27 H 1.08991 * 109.47105 * 59.99758 * 12 10 9 28 28 H 1.08997 * 109.47041 * 300.00062 * 13 12 10 29 29 H 1.09006 * 109.47275 * 59.99392 * 13 12 10 30 30 H 1.07999 * 119.99178 * 180.31682 * 17 15 14 31 31 H 1.07998 * 119.98584 * 179.70016 * 18 17 15 32 32 H 1.07993 * 119.99755 * 179.97438 * 19 18 17 33 33 H 1.08999 * 115.55190 * 153.96769 * 22 9 7 34 34 H 1.08996 * 117.49764 * 0.02562 * 23 22 9 35 35 H 1.08999 * 117.49659 * 145.02224 * 23 22 9 36 36 H 1.08998 * 117.50051 * 252.51877 * 24 23 22 37 37 H 1.09000 * 117.51908 * 107.48332 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0243 -1.2407 0.3654 9 7 1.4054 -2.3431 -0.4655 10 6 0.6710 -2.3041 -1.5950 11 8 0.5445 -1.2606 -2.2003 12 6 0.0072 -3.5569 -2.1058 13 6 -0.7576 -3.2405 -3.3926 14 6 -1.4209 -4.4933 -3.9038 15 6 -0.7501 -5.3205 -4.7865 16 17 0.8559 -4.9154 -5.3063 17 6 -1.3573 -6.4739 -5.2506 18 6 -2.6386 -6.7933 -4.8419 19 6 -3.3115 -5.9642 -3.9643 20 6 -2.7030 -4.8137 -3.4947 21 17 -3.5479 -3.7729 -2.3918 22 6 1.5587 -3.6035 0.2654 23 6 2.2373 -3.5476 1.6355 24 6 2.9767 -4.1511 0.4396 25 1 -0.4850 -0.8352 0.0898 26 1 0.7658 -4.3122 -2.3109 27 1 -0.6862 -3.9332 -1.3538 28 1 -1.5161 -2.4849 -3.1879 29 1 -0.0638 -2.8643 -4.1445 30 1 -0.8318 -7.1225 -5.9358 31 1 -3.1139 -7.6912 -5.2082 32 1 -4.3126 -6.2139 -3.6456 33 1 0.7532 -4.3256 0.1314 34 1 2.5693 -2.5730 1.9932 35 1 1.8783 -4.2329 2.4033 36 1 3.1040 -5.2335 0.4206 37 1 3.7955 -3.5738 0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593970400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:47 Heat of formation + Delta-G solvation = 3.970940 kcal Electronic energy + Delta-G solvation = -23250.685383 eV Core-core repulsion = 19659.633320 eV Total energy + Delta-G solvation = -3591.052063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.80749 -38.73217 -36.74939 -36.30263 -36.23006 -33.97234 -32.78915 -30.88372 -30.75075 -29.37009 -25.47073 -23.63713 -22.94952 -21.77226 -21.44153 -21.06685 -19.10394 -17.39761 -16.70970 -16.40652 -16.29856 -15.45523 -14.80450 -14.44067 -14.35483 -14.13468 -13.91983 -13.62949 -13.35037 -12.84994 -12.75098 -12.37292 -12.14564 -11.94902 -11.79169 -11.32221 -11.27456 -11.17581 -10.95527 -10.81598 -10.71499 -10.64768 -10.36201 -10.20243 -10.05956 -9.83379 -9.67335 -8.89274 -8.85442 -8.60218 -8.02771 -7.28383 -6.32527 -3.84007 0.83028 0.93290 1.84854 2.26278 3.27531 3.44314 3.55239 3.69501 3.97256 4.33055 4.51069 4.64763 4.70522 4.73963 4.84263 5.02211 5.21519 5.30171 5.43301 5.50088 5.56217 5.60202 5.68872 5.74165 5.86419 5.95277 5.99359 6.03267 6.11597 6.18226 6.36864 6.42474 6.51809 6.62408 6.70318 6.90053 7.92783 8.44476 8.85861 9.23450 9.61115 10.14622 10.95487 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.004228 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.636584 B = 6621.410066 C = 7013.075552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.041 3.959 3 Si 1.074 2.926 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.430 4.430 8 H 0.069 0.931 9 N -0.432 5.432 10 C 0.464 3.536 11 O -0.536 6.536 12 C -0.120 4.120 13 C -0.073 4.073 14 C -0.055 4.055 15 C -0.026 4.026 16 Cl -0.051 7.051 17 C -0.107 4.107 18 C -0.107 4.107 19 C -0.106 4.106 20 C -0.027 4.027 21 Cl -0.047 7.047 22 C 0.068 3.932 23 C -0.174 4.174 24 C -0.202 4.202 25 H 0.270 0.730 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -15.772 -7.230 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.172 4.172 3 Si 0.901 3.099 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.556 4.556 8 H 0.086 0.914 9 N -0.153 5.153 10 C 0.252 3.748 11 O -0.415 6.415 12 C -0.161 4.161 13 C -0.111 4.111 14 C -0.056 4.056 15 C -0.053 4.053 16 Cl -0.022 7.022 17 C -0.125 4.125 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.054 4.054 21 Cl -0.018 7.018 22 C -0.038 4.038 23 C -0.212 4.212 24 C -0.241 4.241 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.102 -13.436 -7.571 16.244 hybrid contribution 0.267 -1.899 0.248 1.933 sum -4.835 -15.335 -7.322 17.668 Atomic orbital electron populations 1.70557 1.07467 1.30984 1.38473 1.26111 0.95969 1.02081 0.93019 0.83460 0.74990 0.75129 0.76320 1.20724 1.21658 1.21210 1.19727 0.98507 0.86945 1.50405 0.91358 1.42982 1.46985 1.06191 1.19131 1.20000 0.83866 0.89450 0.81474 1.90613 1.61763 1.31893 1.57188 1.21475 0.99388 0.98651 0.96586 1.20499 1.00342 0.92435 0.97794 1.19856 0.92620 0.97657 0.95501 1.20732 0.88339 0.96576 0.99671 1.98397 1.21107 1.93427 1.89286 1.21130 0.95477 0.95581 1.00352 1.20996 0.94093 0.99849 0.97640 1.21141 1.00714 0.93054 0.97590 1.20772 0.93191 0.94301 0.97145 1.98414 1.76582 1.65959 1.60864 1.21773 0.94157 0.90878 0.96974 1.23080 1.04376 1.02830 0.90914 1.23246 0.97614 0.99147 1.04126 0.91956 0.90569 0.90828 0.89073 0.89264 0.84505 0.84376 0.84481 0.87959 0.87392 0.89846 0.89812 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.85 12.33 55.50 0.68 -25.16 16 2 C 0.04 1.19 4.22 -17.47 -0.07 1.11 16 3 Si 1.07 26.02 29.98 -169.99 -5.10 20.92 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.43 -11.92 7.74 -14.94 -0.12 -12.04 16 8 H 0.07 1.87 7.47 -52.48 -0.39 1.48 16 9 N -0.43 -10.85 2.61 -107.72 -0.28 -11.14 16 10 C 0.46 11.66 6.43 -10.98 -0.07 11.59 16 11 O -0.54 -15.69 13.81 5.54 0.08 -15.61 16 12 C -0.12 -2.32 4.24 -27.88 -0.12 -2.44 16 13 C -0.07 -1.32 3.85 -27.88 -0.11 -1.43 16 14 C -0.05 -0.80 5.14 -104.55 -0.54 -1.34 16 15 C -0.03 -0.34 6.31 -39.50 -0.25 -0.59 16 16 Cl -0.05 -0.70 27.29 -51.86 -1.42 -2.11 16 17 C -0.11 -1.07 9.83 -39.54 -0.39 -1.46 16 18 C -0.11 -0.94 10.04 -39.59 -0.40 -1.34 16 19 C -0.11 -1.09 9.83 -39.54 -0.39 -1.48 16 20 C -0.03 -0.36 6.31 -39.50 -0.25 -0.61 16 21 Cl -0.05 -0.68 27.30 -51.86 -1.42 -2.10 16 22 C 0.07 1.38 5.99 -67.92 -0.41 0.98 16 23 C -0.17 -3.22 9.81 -26.73 -0.26 -3.48 16 24 C -0.20 -3.58 10.28 -26.73 -0.27 -3.85 16 25 H 0.27 8.36 7.41 -40.82 -0.30 8.05 16 26 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 27 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 28 H 0.09 1.81 6.86 -51.93 -0.36 1.45 16 29 H 0.09 1.70 6.85 -51.93 -0.36 1.34 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.10 1.85 6.81 -51.93 -0.35 1.50 16 34 H 0.11 2.24 6.85 -51.93 -0.36 1.89 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -32.96 341.18 -10.21 -43.17 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.26 Total: 3.26 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.64 Total: -16.37 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.40 Total: -36.30 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.08 Total: -15.61 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.10 Total: 20.92 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -2.83 Total: -4.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.96 -10.21 -43.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.143 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds