Wall clock time and date at job start Tue Mar 31 2020 15:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47172 * 120.00124 * 3 2 1 6 6 H 1.48496 * 109.47259 * 240.00143 * 3 2 1 7 7 C 1.38942 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99706 * 203.03056 * 7 2 1 9 9 N 1.37091 * 120.00442 * 23.03069 * 7 2 1 10 10 C 1.34781 * 120.00258 * 43.14424 * 9 7 2 11 11 O 1.21296 * 119.99402 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46926 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47304 * 179.97438 * 13 12 10 15 15 C 1.38330 * 120.01276 * 269.73092 * 14 13 12 16 16 Cl 1.73595 * 120.00896 * 359.97438 * 15 14 13 17 17 C 1.38363 * 119.98151 * 179.69667 * 15 14 13 18 18 C 1.38224 * 120.01492 * 0.59357 * 17 15 14 19 19 C 1.38217 * 120.02642 * 359.67870 * 18 17 15 20 20 C 1.38337 * 120.01155 * 89.99585 * 14 13 12 21 21 Cl 1.73601 * 120.00356 * 359.97438 * 20 14 13 22 22 C 1.46508 * 120.00358 * 223.14930 * 9 7 2 23 23 C 1.53002 * 117.49453 * 8.25806 * 22 9 7 24 24 C 1.53004 * 60.00148 * 252.51359 * 23 22 9 25 25 H 0.96999 * 120.00137 * 186.13805 * 1 2 3 26 26 H 1.08997 * 109.46517 * 299.99567 * 12 10 9 27 27 H 1.08991 * 109.47105 * 59.99758 * 12 10 9 28 28 H 1.08997 * 109.47041 * 300.00062 * 13 12 10 29 29 H 1.09006 * 109.47275 * 59.99392 * 13 12 10 30 30 H 1.07999 * 119.99178 * 180.31682 * 17 15 14 31 31 H 1.07998 * 119.98584 * 179.70016 * 18 17 15 32 32 H 1.07993 * 119.99755 * 179.97438 * 19 18 17 33 33 H 1.08999 * 115.55190 * 153.96769 * 22 9 7 34 34 H 1.08996 * 117.49764 * 0.02562 * 23 22 9 35 35 H 1.08999 * 117.49659 * 145.02224 * 23 22 9 36 36 H 1.08998 * 117.50051 * 252.51877 * 24 23 22 37 37 H 1.09000 * 117.51908 * 107.48332 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0243 -1.2407 0.3654 9 7 1.4054 -2.3431 -0.4655 10 6 0.6710 -2.3041 -1.5950 11 8 0.5445 -1.2606 -2.2003 12 6 0.0072 -3.5569 -2.1058 13 6 -0.7576 -3.2405 -3.3926 14 6 -1.4209 -4.4933 -3.9038 15 6 -0.7501 -5.3205 -4.7865 16 17 0.8559 -4.9154 -5.3063 17 6 -1.3573 -6.4739 -5.2506 18 6 -2.6386 -6.7933 -4.8419 19 6 -3.3115 -5.9642 -3.9643 20 6 -2.7030 -4.8137 -3.4947 21 17 -3.5479 -3.7729 -2.3918 22 6 1.5587 -3.6035 0.2654 23 6 2.2373 -3.5476 1.6355 24 6 2.9767 -4.1511 0.4396 25 1 -0.4850 -0.8352 0.0898 26 1 0.7658 -4.3122 -2.3109 27 1 -0.6862 -3.9332 -1.3538 28 1 -1.5161 -2.4849 -3.1879 29 1 -0.0638 -2.8643 -4.1445 30 1 -0.8318 -7.1225 -5.9358 31 1 -3.1139 -7.6912 -5.2082 32 1 -4.3126 -6.2139 -3.6456 33 1 0.7532 -4.3256 0.1314 34 1 2.5693 -2.5730 1.9932 35 1 1.8783 -4.2329 2.4033 36 1 3.1040 -5.2335 0.4206 37 1 3.7955 -3.5738 0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593970400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:47 Heat of formation + Delta-G solvation = -13.814304 kcal Electronic energy + Delta-G solvation = -23251.456609 eV Core-core repulsion = 19659.633320 eV Total energy + Delta-G solvation = -3591.823289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98090 -40.37925 -37.99491 -37.76319 -37.25149 -35.45968 -34.63819 -32.80216 -31.62132 -30.71938 -27.22471 -25.26126 -23.83823 -23.25291 -22.97418 -22.38841 -20.98644 -18.72278 -18.37992 -17.93661 -17.40407 -16.66398 -16.43515 -16.06911 -15.63990 -15.46661 -15.35098 -15.14339 -14.73399 -14.52057 -14.06240 -13.67511 -13.43008 -13.33666 -12.98499 -12.87453 -12.70865 -12.66546 -12.33106 -12.11940 -12.11169 -11.99719 -11.91157 -11.80666 -11.73143 -11.69755 -11.34702 -10.69043 -10.10319 -9.78414 -9.75952 -9.31319 -8.53588 -6.04505 -0.03788 0.01783 0.87200 1.28552 1.47031 1.59159 1.75639 2.10155 2.39145 2.47743 2.92541 3.06501 3.32841 3.51219 3.74262 3.86606 3.98943 4.00239 4.10375 4.20347 4.21788 4.22417 4.34942 4.40126 4.54059 4.62233 4.79008 4.79672 4.95369 5.07560 5.15256 5.17699 5.19288 5.21213 5.38821 5.60328 5.74373 6.18830 6.84994 7.17320 7.53851 8.14946 8.71536 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.004228 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.636584 B = 6621.410066 C = 7013.075552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C -0.007 4.007 3 Si 1.113 2.887 4 H -0.287 1.287 5 H -0.257 1.257 6 H -0.287 1.287 7 C -0.433 4.433 8 H 0.066 0.934 9 N -0.448 5.448 10 C 0.451 3.549 11 O -0.589 6.589 12 C -0.099 4.099 13 C -0.061 4.061 14 C -0.078 4.078 15 C -0.036 4.036 16 Cl -0.066 7.066 17 C -0.099 4.099 18 C -0.086 4.086 19 C -0.100 4.100 20 C -0.040 4.040 21 Cl -0.070 7.070 22 C 0.037 3.963 23 C -0.169 4.169 24 C -0.176 4.176 25 H 0.253 0.747 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 -19.471 -7.605 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.214 4.214 3 Si 0.935 3.065 4 H -0.213 1.213 5 H -0.181 1.181 6 H -0.214 1.214 7 C -0.560 4.560 8 H 0.084 0.916 9 N -0.169 5.169 10 C 0.241 3.759 11 O -0.472 6.472 12 C -0.140 4.140 13 C -0.099 4.099 14 C -0.079 4.079 15 C -0.063 4.063 16 Cl -0.037 7.037 17 C -0.117 4.117 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.067 4.067 21 Cl -0.041 7.041 22 C -0.068 4.068 23 C -0.207 4.207 24 C -0.215 4.215 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.183 0.817 31 H 0.201 0.799 32 H 0.181 0.819 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.176 -17.180 -7.909 19.608 hybrid contribution 0.318 -0.907 0.311 1.010 sum -4.858 -18.087 -7.598 20.211 Atomic orbital electron populations 1.70678 1.08456 1.29878 1.41885 1.27385 0.96060 1.05470 0.92438 0.82983 0.74297 0.71723 0.77516 1.21285 1.18104 1.21363 1.19875 0.98476 0.88277 1.49378 0.91629 1.43211 1.46651 1.07291 1.19707 1.20972 0.83280 0.90605 0.81029 1.90565 1.63552 1.34279 1.58778 1.21296 0.99541 0.95824 0.97299 1.20198 0.99118 0.93891 0.96659 1.19534 0.93643 0.97018 0.97749 1.20874 0.87915 0.97558 0.99977 1.98392 1.22220 1.93688 1.89388 1.21525 0.95976 0.94370 0.99840 1.21528 0.93075 1.00302 0.95452 1.21513 1.01745 0.91619 0.96985 1.20928 0.92866 0.95260 0.97599 1.98408 1.76893 1.67006 1.61788 1.22099 0.96818 0.89531 0.98317 1.23116 1.03856 1.02439 0.91247 1.23269 0.94845 1.01191 1.02185 0.93715 0.88829 0.89845 0.91895 0.91199 0.81679 0.79875 0.81938 0.85531 0.90293 0.86230 0.85561 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.11 12.33 21.66 0.27 -55.85 16 2 C -0.01 -0.43 4.22 84.92 0.36 -0.07 16 3 Si 1.11 53.83 29.98 68.60 2.06 55.89 16 4 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 5 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.43 -24.73 7.74 84.04 0.65 -24.08 16 8 H 0.07 3.68 7.47 -2.91 -0.02 3.66 16 9 N -0.45 -23.03 2.61 -613.09 -1.60 -24.63 16 10 C 0.45 23.57 6.43 87.66 0.56 24.13 16 11 O -0.59 -36.48 13.81 -3.08 -0.04 -36.52 16 12 C -0.10 -3.91 4.24 29.85 0.13 -3.78 16 13 C -0.06 -2.28 3.85 29.85 0.11 -2.17 16 14 C -0.08 -2.24 5.14 -19.82 -0.10 -2.34 16 15 C -0.04 -0.88 6.31 22.32 0.14 -0.74 16 16 Cl -0.07 -1.74 27.29 -2.72 -0.07 -1.82 16 17 C -0.10 -1.59 9.83 22.30 0.22 -1.37 16 18 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 19 C -0.10 -1.69 9.83 22.29 0.22 -1.47 16 20 C -0.04 -1.00 6.31 22.32 0.14 -0.86 16 21 Cl -0.07 -2.04 27.30 -2.72 -0.07 -2.12 16 22 C 0.04 1.47 5.99 44.99 0.27 1.74 16 23 C -0.17 -5.96 9.81 30.60 0.30 -5.66 16 24 C -0.18 -5.81 10.28 30.60 0.31 -5.50 16 25 H 0.25 16.56 7.41 -92.71 -0.69 15.87 16 26 H 0.09 3.31 8.11 -2.39 -0.02 3.29 16 27 H 0.08 3.09 7.57 -2.39 -0.02 3.07 16 28 H 0.06 2.68 6.86 -2.39 -0.02 2.66 16 29 H 0.07 2.83 6.85 -2.38 -0.02 2.81 16 30 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 4.33 6.81 -2.39 -0.02 4.32 16 34 H 0.08 3.27 6.85 -2.39 -0.02 3.25 16 35 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -77.58 341.18 5.25 -72.33 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.18 Total: 15.74 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 3.54 Total: -23.02 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.33 Total: -80.48 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.04 Total: -36.52 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 2.06 Total: 55.89 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.15 Total: -3.93 kcal Total: -77.58 5.25 -72.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.513 kcal (2) G-P(sol) polarization free energy of solvation -77.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds