Wall clock time and date at job start Tue Mar 31 2020 14:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48497 * 109.47185 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46840 * 119.99535 * 3 2 1 6 6 H 1.48501 * 109.46810 * 239.99711 * 3 2 1 7 7 C 1.37873 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 185.72375 * 7 2 1 9 9 C 1.50701 * 119.99885 * 5.72537 * 7 2 1 10 10 C 1.53001 * 115.55107 * 39.95625 * 9 7 2 11 11 N 1.46499 * 109.47251 * 173.97830 * 10 9 7 12 12 C 1.40267 * 125.54248 * 282.41702 * 11 10 9 13 13 C 1.40908 * 123.77965 * 359.97438 * 12 11 10 14 14 C 1.37437 * 121.15905 * 180.02562 * 13 12 11 15 15 Cl 1.73592 * 119.96374 * 179.97438 * 14 13 12 16 16 C 1.38420 * 120.06980 * 359.97438 * 14 13 12 17 17 C 1.37874 * 119.33639 * 359.41322 * 16 14 13 18 18 C 1.37852 * 118.15580 * 179.75579 * 12 11 10 19 19 C 1.52165 * 112.69980 * 0.52475 * 18 12 11 20 20 S 1.66253 * 125.54402 * 102.72240 * 11 10 9 21 21 O 1.42101 * 105.39362 * 294.88994 * 20 11 10 22 22 O 1.42101 * 105.39005 * 65.11137 * 20 11 10 23 23 C 1.52996 * 117.49933 * 254.24664 * 9 7 2 24 24 C 1.52996 * 60.00040 * 252.50917 * 23 9 7 25 25 H 0.97006 * 119.99769 * 355.00472 * 1 2 3 26 26 H 1.09000 * 109.47277 * 293.97536 * 10 9 7 27 27 H 1.09003 * 109.47341 * 53.97513 * 10 9 7 28 28 H 1.08004 * 119.42039 * 0.02562 * 13 12 11 29 29 H 1.07995 * 120.32810 * 179.97438 * 16 14 13 30 30 H 1.08000 * 119.58647 * 179.97438 * 17 16 14 31 31 H 1.08995 * 110.82254 * 241.50582 * 19 18 12 32 32 H 1.09000 * 110.82478 * 117.94612 * 19 18 12 33 33 H 1.08999 * 117.49760 * 0.02562 * 23 9 7 34 34 H 1.09003 * 117.50337 * 145.02337 * 23 9 7 35 35 H 1.09003 * 117.49990 * 252.50793 * 24 23 9 36 36 H 1.09004 * 117.49780 * 107.48801 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1964 0.0938 9 6 1.2567 -2.4959 -0.1291 10 6 0.0917 -2.4918 -1.1209 11 7 -0.4457 -3.8487 -1.2486 12 6 0.1316 -4.8876 -1.9934 13 6 1.3263 -4.7544 -2.7286 14 6 1.8443 -5.8095 -3.4409 15 17 3.3180 -5.6107 -4.3365 16 6 1.1922 -7.0304 -3.4449 17 6 0.0291 -7.1774 -2.7192 18 6 -0.5033 -6.1112 -2.0038 19 6 -1.7819 -6.1163 -1.1788 20 16 -1.8429 -4.4054 -0.5402 21 8 -1.5987 -4.3640 0.8591 22 8 -2.8935 -3.6627 -1.1434 23 6 1.1115 -3.3555 1.1283 24 6 2.0613 -3.7898 0.0102 25 1 -0.4850 0.8369 0.0732 26 1 -0.6904 -1.8238 -0.7601 27 1 0.4436 -2.1474 -2.0934 28 1 1.8439 -3.8065 -2.7325 29 1 1.5953 -7.8622 -4.0035 30 1 -0.4832 -8.1282 -2.7198 31 1 -1.7122 -6.8330 -0.3606 32 1 -2.6475 -6.3265 -1.8070 33 1 1.5566 -2.9791 2.0493 34 1 0.1858 -3.9182 1.2492 35 1 1.7604 -4.6382 -0.6045 36 1 3.1316 -3.6993 0.1955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596264082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:03 Heat of formation + Delta-G solvation = -0.514146 kcal Electronic energy + Delta-G solvation = -24317.497393 eV Core-core repulsion = 20728.294548 eV Total energy + Delta-G solvation = -3589.202845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19351 -37.41008 -36.91870 -36.52135 -35.71877 -34.55844 -32.60074 -32.11340 -30.09076 -27.19165 -26.43475 -25.32247 -22.23860 -22.14506 -20.83102 -19.57478 -18.86087 -17.34266 -16.92759 -16.60086 -16.38307 -15.88565 -15.02972 -14.82434 -14.55326 -14.38239 -14.32842 -13.94850 -13.63995 -13.19918 -12.81165 -12.41474 -12.26541 -12.04397 -11.91712 -11.82153 -11.51311 -11.43829 -11.17038 -10.98537 -10.92528 -10.79062 -10.68596 -10.60691 -10.31676 -10.06273 -9.39164 -9.04690 -8.79174 -8.70177 -8.09088 -7.77858 -6.16905 -4.19486 0.23335 1.03547 1.28551 2.07549 2.55175 3.25118 3.31018 3.33066 3.47459 3.65879 4.00501 4.30301 4.44119 4.51485 4.86619 4.96880 5.05472 5.09795 5.15923 5.29982 5.52295 5.62694 5.72489 6.07002 6.14337 6.17040 6.24490 6.40465 6.45806 6.59479 6.73288 6.84759 6.88660 7.18602 7.32249 7.45340 7.53164 7.81991 8.32651 8.78175 9.41330 10.88781 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.006157 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.934920 B = 4546.562856 C = 6307.647107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.484 4.484 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.170 3.830 11 N -0.909 5.909 12 C 0.188 3.812 13 C -0.122 4.122 14 C 0.002 3.998 15 Cl -0.067 7.067 16 C -0.149 4.149 17 C -0.047 4.047 18 C -0.150 4.150 19 C -0.560 4.560 20 S 2.575 3.425 21 O -0.924 6.924 22 O -0.942 6.942 23 C -0.214 4.214 24 C -0.217 4.217 25 H 0.268 0.732 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -14.643 -7.026 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.029 3.971 10 C 0.050 3.950 11 N -0.732 5.732 12 C 0.087 3.913 13 C -0.145 4.145 14 C -0.025 4.025 15 Cl -0.038 7.038 16 C -0.170 4.170 17 C -0.066 4.066 18 C -0.156 4.156 19 C -0.689 4.689 20 S 2.672 3.328 21 O -0.914 6.914 22 O -0.931 6.931 23 C -0.252 4.252 24 C -0.254 4.254 25 H 0.079 0.921 26 H 0.152 0.848 27 H 0.090 0.910 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.401 -13.720 -6.461 15.355 hybrid contribution 1.063 0.373 -0.272 1.159 sum -1.338 -13.347 -6.733 15.009 Atomic orbital electron populations 1.69630 1.06012 1.27588 1.49729 1.25027 0.94964 0.99447 0.94183 0.86471 0.79465 0.82277 0.78774 1.21080 1.20178 1.20015 1.20517 0.93083 0.88428 1.50156 0.91704 1.19320 0.94011 0.89830 0.93911 1.21674 0.99434 0.74151 0.99773 1.56159 1.40279 1.18345 1.58426 1.18213 0.93635 0.87366 0.92109 1.20858 0.95433 1.00286 0.97932 1.20452 0.89709 0.95180 0.97172 1.98373 1.34093 1.97692 1.73654 1.20752 0.96633 0.96479 1.03101 1.20335 0.94682 0.97241 0.94366 1.18995 0.96905 0.93803 1.05904 1.29668 1.03358 1.25329 1.10502 1.06273 0.73916 0.77222 0.75421 1.93609 1.83047 1.85237 1.29470 1.93647 1.54549 1.67093 1.77860 1.23490 1.01006 1.06697 0.94023 1.23146 0.96679 1.00473 1.05078 0.92130 0.84789 0.91009 0.83356 0.84531 0.84698 0.83234 0.83377 0.90964 0.88025 0.90624 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 10.80 55.43 0.60 -23.60 16 2 C 0.07 1.74 5.31 -17.82 -0.09 1.64 16 3 Si 0.90 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.48 -12.77 9.02 -34.44 -0.31 -13.08 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.03 0.75 2.33 -155.66 -0.36 0.39 16 10 C 0.17 3.82 5.05 -4.04 -0.02 3.80 16 11 N -0.91 -17.02 2.28 -58.20 -0.13 -17.15 16 12 C 0.19 3.02 4.87 -83.13 -0.40 2.61 16 13 C -0.12 -1.91 7.23 -38.86 -0.28 -2.19 16 14 C 0.00 0.03 6.29 -39.81 -0.25 -0.22 16 15 Cl -0.07 -0.84 28.95 -51.86 -1.50 -2.34 16 16 C -0.15 -1.64 9.86 -39.65 -0.39 -2.03 16 17 C -0.05 -0.49 9.97 -39.43 -0.39 -0.89 16 18 C -0.15 -1.94 6.04 -103.75 -0.63 -2.57 16 19 C -0.56 -6.22 7.46 36.73 0.27 -5.94 16 20 S 2.58 43.53 6.36 -107.50 -0.68 42.84 16 21 O -0.92 -18.27 14.89 -57.38 -0.85 -19.12 16 22 O -0.94 -18.35 18.14 -57.38 -1.04 -19.39 16 23 C -0.21 -5.09 9.65 -26.73 -0.26 -5.34 16 24 C -0.22 -4.68 8.82 -26.73 -0.24 -4.91 16 25 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 26 H 0.13 3.38 6.00 -51.93 -0.31 3.06 16 27 H 0.07 1.58 7.73 -51.93 -0.40 1.18 16 28 H 0.15 2.54 7.13 -52.48 -0.37 2.16 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.10 2.37 4.23 -51.93 -0.22 2.15 16 35 H 0.08 1.47 3.98 -51.93 -0.21 1.27 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -30.96 318.08 -10.79 -41.76 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.60 Total: 5.44 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -3.35 Total: -28.72 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.47 Total: -40.76 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.90 Total: -38.51 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.68 Total: 42.84 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.96 -10.79 -41.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596264082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.244 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds