Wall clock time and date at job start Tue Mar 31 2020 14:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48497 * 109.47185 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46840 * 119.99535 * 3 2 1 6 6 H 1.48501 * 109.46810 * 239.99711 * 3 2 1 7 7 C 1.37873 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 185.72375 * 7 2 1 9 9 C 1.50701 * 119.99885 * 5.72537 * 7 2 1 10 10 C 1.53001 * 115.55107 * 39.95625 * 9 7 2 11 11 N 1.46499 * 109.47251 * 173.97830 * 10 9 7 12 12 C 1.40267 * 125.54248 * 282.41702 * 11 10 9 13 13 C 1.40908 * 123.77965 * 359.97438 * 12 11 10 14 14 C 1.37437 * 121.15905 * 180.02562 * 13 12 11 15 15 Cl 1.73592 * 119.96374 * 179.97438 * 14 13 12 16 16 C 1.38420 * 120.06980 * 359.97438 * 14 13 12 17 17 C 1.37874 * 119.33639 * 359.41322 * 16 14 13 18 18 C 1.37852 * 118.15580 * 179.75579 * 12 11 10 19 19 C 1.52165 * 112.69980 * 0.52475 * 18 12 11 20 20 S 1.66253 * 125.54402 * 102.72240 * 11 10 9 21 21 O 1.42101 * 105.39362 * 294.88994 * 20 11 10 22 22 O 1.42101 * 105.39005 * 65.11137 * 20 11 10 23 23 C 1.52996 * 117.49933 * 254.24664 * 9 7 2 24 24 C 1.52996 * 60.00040 * 252.50917 * 23 9 7 25 25 H 0.97006 * 119.99769 * 355.00472 * 1 2 3 26 26 H 1.09000 * 109.47277 * 293.97536 * 10 9 7 27 27 H 1.09003 * 109.47341 * 53.97513 * 10 9 7 28 28 H 1.08004 * 119.42039 * 0.02562 * 13 12 11 29 29 H 1.07995 * 120.32810 * 179.97438 * 16 14 13 30 30 H 1.08000 * 119.58647 * 179.97438 * 17 16 14 31 31 H 1.08995 * 110.82254 * 241.50582 * 19 18 12 32 32 H 1.09000 * 110.82478 * 117.94612 * 19 18 12 33 33 H 1.08999 * 117.49760 * 0.02562 * 23 9 7 34 34 H 1.09003 * 117.50337 * 145.02337 * 23 9 7 35 35 H 1.09003 * 117.49990 * 252.50793 * 24 23 9 36 36 H 1.09004 * 117.49780 * 107.48801 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1964 0.0938 9 6 1.2567 -2.4959 -0.1291 10 6 0.0917 -2.4918 -1.1209 11 7 -0.4457 -3.8487 -1.2486 12 6 0.1316 -4.8876 -1.9934 13 6 1.3263 -4.7544 -2.7286 14 6 1.8443 -5.8095 -3.4409 15 17 3.3180 -5.6107 -4.3365 16 6 1.1922 -7.0304 -3.4449 17 6 0.0291 -7.1774 -2.7192 18 6 -0.5033 -6.1112 -2.0038 19 6 -1.7819 -6.1163 -1.1788 20 16 -1.8429 -4.4054 -0.5402 21 8 -1.5987 -4.3640 0.8591 22 8 -2.8935 -3.6627 -1.1434 23 6 1.1115 -3.3555 1.1283 24 6 2.0613 -3.7898 0.0102 25 1 -0.4850 0.8369 0.0732 26 1 -0.6904 -1.8238 -0.7601 27 1 0.4436 -2.1474 -2.0934 28 1 1.8439 -3.8065 -2.7325 29 1 1.5953 -7.8622 -4.0035 30 1 -0.4832 -8.1282 -2.7198 31 1 -1.7122 -6.8330 -0.3606 32 1 -2.6475 -6.3265 -1.8070 33 1 1.5566 -2.9791 2.0493 34 1 0.1858 -3.9182 1.2492 35 1 1.7604 -4.6382 -0.6045 36 1 3.1316 -3.6993 0.1955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596264082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:03 Heat of formation + Delta-G solvation = -20.256604 kcal Electronic energy + Delta-G solvation = -24318.353490 eV Core-core repulsion = 20728.294548 eV Total energy + Delta-G solvation = -3590.058942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33952 -38.93452 -38.28670 -37.63920 -37.08461 -35.87560 -34.25503 -33.60724 -31.21496 -28.41430 -27.97090 -27.14129 -23.50906 -23.30549 -22.43917 -21.18425 -20.32442 -18.64139 -18.49830 -18.03327 -17.49670 -17.35751 -16.68472 -16.19600 -15.94049 -15.82153 -15.55545 -15.09244 -14.64134 -14.56365 -14.11697 -14.02469 -13.68216 -13.44732 -13.33633 -13.21619 -12.96706 -12.84380 -12.79231 -12.59822 -12.41659 -12.27381 -11.97717 -11.92056 -11.80928 -11.66100 -11.12724 -10.99295 -10.61582 -10.01220 -9.74011 -9.00592 -8.17668 -6.28402 -0.99092 0.03092 0.28369 1.03435 1.30066 1.41232 1.42118 1.50618 2.37247 2.46599 2.49386 2.90489 2.98869 3.27648 3.42356 3.60162 3.89797 4.10433 4.15056 4.15926 4.31865 4.39868 4.55483 4.60670 4.67500 4.74659 4.93674 5.04036 5.05334 5.14615 5.25955 5.27315 5.39414 5.40982 5.62071 5.66035 5.79912 5.85353 6.33773 6.74158 7.35261 8.85913 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.006157 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.934920 B = 4546.562856 C = 6307.647107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.963 3.037 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.008 3.992 10 C 0.190 3.810 11 N -0.923 5.923 12 C 0.150 3.850 13 C -0.146 4.146 14 C -0.003 4.003 15 Cl -0.066 7.066 16 C -0.134 4.134 17 C -0.028 4.028 18 C -0.145 4.145 19 C -0.508 4.508 20 S 2.552 3.448 21 O -0.968 6.968 22 O -0.984 6.984 23 C -0.227 4.227 24 C -0.188 4.188 25 H 0.267 0.733 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.172 0.828 30 H 0.188 0.812 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 -18.654 -8.533 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.006 3.994 10 C 0.067 3.933 11 N -0.745 5.745 12 C 0.051 3.949 13 C -0.169 4.169 14 C -0.031 4.031 15 Cl -0.037 7.037 16 C -0.154 4.154 17 C -0.047 4.047 18 C -0.150 4.150 19 C -0.641 4.641 20 S 2.655 3.345 21 O -0.957 6.957 22 O -0.974 6.974 23 C -0.265 4.265 24 C -0.224 4.224 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.190 0.810 30 H 0.205 0.795 31 H 0.210 0.790 32 H 0.211 0.789 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.422 -17.702 -7.961 19.560 hybrid contribution 1.103 1.414 0.089 1.795 sum -1.319 -16.288 -7.872 18.139 Atomic orbital electron populations 1.69819 1.07206 1.28072 1.50362 1.25760 0.95688 1.02463 0.93832 0.85529 0.78295 0.78479 0.78883 1.20714 1.19953 1.19218 1.20818 0.93053 0.90111 1.50597 0.92411 1.19414 0.95326 0.90008 0.94606 1.20924 0.97699 0.76310 0.98324 1.55815 1.41224 1.17679 1.59825 1.18481 0.94849 0.88009 0.93595 1.20714 0.96093 1.00156 0.99923 1.20640 0.89956 0.95628 0.96851 1.98376 1.34078 1.97787 1.73486 1.21242 0.96061 0.95985 1.02071 1.20879 0.93923 0.98059 0.91852 1.19322 0.96948 0.92943 1.05830 1.29414 1.04369 1.18590 1.11767 1.06650 0.72877 0.80295 0.74722 1.93537 1.83138 1.87138 1.31924 1.93591 1.55451 1.70417 1.77921 1.23474 1.02053 1.07450 0.93502 1.23125 0.95937 1.00022 1.03359 0.92327 0.88202 0.92268 0.86325 0.81038 0.79509 0.79001 0.78908 0.92765 0.87395 0.88082 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.54 10.80 21.45 0.23 -52.31 16 2 C 0.02 1.22 5.31 84.65 0.45 1.67 16 3 Si 0.96 43.56 29.55 68.60 2.03 45.59 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.51 -28.20 9.02 25.60 0.23 -27.97 16 8 H 0.06 3.18 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.42 2.33 -52.93 -0.12 0.29 16 10 C 0.19 9.14 5.05 86.38 0.44 9.58 16 11 N -0.92 -35.44 2.28 -338.05 -0.77 -36.21 16 12 C 0.15 4.62 4.87 38.35 0.19 4.81 16 13 C -0.15 -4.48 7.23 22.73 0.16 -4.31 16 14 C 0.00 -0.08 6.29 22.12 0.14 0.06 16 15 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 16 C -0.13 -2.19 9.86 22.23 0.22 -1.97 16 17 C -0.03 -0.40 9.97 22.37 0.22 -0.18 16 18 C -0.14 -3.06 6.04 -19.30 -0.12 -3.17 16 19 C -0.51 -8.61 7.46 71.71 0.54 -8.08 16 20 S 2.55 86.18 6.36 -56.49 -0.36 85.82 16 21 O -0.97 -39.33 14.89 -127.81 -1.90 -41.23 16 22 O -0.98 -39.61 18.14 -127.81 -2.32 -41.93 16 23 C -0.23 -11.26 9.65 30.59 0.30 -10.97 16 24 C -0.19 -8.30 8.82 30.59 0.27 -8.03 16 25 H 0.27 14.63 8.32 -92.70 -0.77 13.86 16 26 H 0.10 5.48 6.00 -2.39 -0.01 5.46 16 27 H 0.06 2.86 7.73 -2.39 -0.02 2.84 16 28 H 0.12 4.29 7.13 -2.91 -0.02 4.27 16 29 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.19 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.19 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.11 5.24 4.23 -2.39 -0.01 5.23 16 35 H 0.10 3.94 3.98 -2.39 -0.01 3.93 16 36 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -74.58 318.08 0.87 -73.71 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.13 Total: 16.47 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 2.91 Total: -48.27 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -0.54 Total: -88.53 kcal Atomic # 8 Polarization: -78.94 SS G_CDS: -4.22 Total: -83.16 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 86.18 SS G_CDS: -0.36 Total: 85.82 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -74.58 0.87 -73.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596264082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.454 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds