Wall clock time and date at job start Tue Mar 31 2020 15:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46573 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72068 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47229 * 121.34144 * 179.97438 * 13 11 10 15 15 C 1.52787 * 107.91140 * 115.75095 * 14 13 11 16 16 C 1.50602 * 110.85968 * 47.47289 * 15 14 13 17 17 C 1.38994 * 117.60280 * 159.95343 * 16 15 14 18 18 C 1.37901 * 120.62750 * 179.50411 * 17 16 15 19 19 C 1.38350 * 119.82964 * 359.93472 * 18 17 16 20 20 Cl 1.73603 * 120.16369 * 180.22455 * 19 18 17 21 21 C 1.38190 * 119.67649 * 0.25166 * 19 18 17 22 22 Cl 1.73598 * 119.76999 * 180.02562 * 21 19 18 23 23 C 1.37668 * 122.85681 * 339.85081 * 16 15 14 24 24 C 1.46692 * 121.33887 * 359.72023 * 13 11 10 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.08995 * 109.77965 * 235.35855 * 14 13 11 31 31 H 1.09005 * 109.77135 * 356.14963 * 14 13 11 32 32 H 1.08997 * 109.19579 * 167.82571 * 15 14 13 33 33 H 1.08997 * 109.20007 * 287.16285 * 15 14 13 34 34 H 1.07996 * 119.68850 * 359.50244 * 17 16 15 35 35 H 1.08001 * 120.08214 * 179.91749 * 18 17 16 36 36 H 1.09003 * 109.43582 * 344.50311 * 24 13 11 37 37 H 1.09002 * 109.43894 * 104.37490 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0045 12 8 0.2789 -4.9672 0.0101 13 7 2.1655 -6.1344 0.0052 14 6 1.4594 -7.4263 0.0075 15 6 1.7869 -8.1431 -1.3015 16 6 3.2673 -8.1092 -1.5757 17 6 3.7797 -9.0485 -2.4629 18 6 5.1246 -9.0673 -2.7669 19 6 5.9745 -8.1430 -2.1860 20 17 7.6681 -8.1552 -2.5670 21 6 5.4687 -7.2104 -1.3005 22 17 6.5328 -6.0491 -0.5706 23 6 4.1146 -7.1956 -0.9903 24 6 3.6320 -6.1687 -0.0020 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 1.7951 -8.0286 0.8517 31 1 0.3846 -7.2590 0.0774 32 1 1.4585 -9.1803 -1.2340 33 1 1.2600 -7.6529 -2.1201 34 1 3.1182 -9.7704 -2.9186 35 1 5.5135 -9.8019 -3.4566 36 1 4.0164 -5.1879 -0.2819 37 1 3.9937 -6.4289 0.9928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597963946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:17 Heat of formation + Delta-G solvation = -35.213276 kcal Electronic energy + Delta-G solvation = -22678.510383 eV Core-core repulsion = 19085.759165 eV Total energy + Delta-G solvation = -3592.751218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73514 -39.07984 -37.11397 -36.82613 -35.81860 -33.61847 -33.03332 -31.66101 -30.98117 -29.49973 -26.40967 -25.51012 -23.93301 -22.79386 -21.91955 -20.57527 -18.48091 -17.49592 -17.13759 -16.33875 -16.08447 -15.78838 -15.44361 -15.16210 -14.69705 -14.41980 -14.26194 -13.84441 -13.59311 -13.20633 -13.05538 -12.72722 -12.59365 -12.20927 -12.09703 -12.00225 -11.79259 -11.45771 -11.27566 -11.19786 -11.06777 -10.99136 -10.94461 -10.56797 -9.98253 -9.66828 -9.23142 -9.14431 -9.01982 -8.87125 -8.59839 -8.32146 -5.96172 -4.00371 0.58350 0.69790 1.53883 1.90809 3.01431 3.07931 3.12787 3.33113 3.40450 3.43957 4.13276 4.26303 4.47228 4.53980 4.64930 4.78264 4.91184 5.03239 5.10899 5.20945 5.26507 5.39118 5.42401 5.47552 5.54376 5.64100 5.79274 5.87327 6.03183 6.17174 6.17856 6.23271 6.54370 6.85802 7.61922 7.74420 7.84652 8.06206 8.37402 8.64105 9.07852 9.63366 11.14834 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003406 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.138753 B = 8217.973317 C = 9771.473045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.519 3.481 12 O -0.527 6.527 13 N -0.626 5.626 14 C 0.108 3.892 15 C -0.098 4.098 16 C -0.050 4.050 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.033 4.033 20 Cl -0.051 7.051 21 C -0.027 4.027 22 Cl -0.040 7.040 23 C -0.071 4.071 24 C 0.148 3.852 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.433 -22.988 -3.964 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.310 3.690 12 O -0.402 6.402 13 N -0.362 5.362 14 C -0.015 4.015 15 C -0.136 4.136 16 C -0.051 4.051 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.061 4.061 20 Cl -0.022 7.022 21 C -0.056 4.056 22 Cl -0.011 7.011 23 C -0.073 4.073 24 C 0.025 3.975 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.835 -22.714 -3.913 25.910 hybrid contribution 0.938 0.891 -0.114 1.299 sum 12.773 -21.823 -4.027 25.605 Atomic orbital electron populations 1.70004 1.06049 1.26475 1.50313 1.25014 0.94811 0.99214 0.95288 0.86549 0.80068 0.83862 0.77592 1.19709 1.21016 1.21001 1.21249 0.92980 0.90942 1.51249 0.92526 1.18912 0.93118 0.89335 0.98639 1.21931 1.00846 0.91831 1.02442 1.21575 0.88387 0.85111 0.73925 1.90665 1.14195 1.86909 1.48415 1.48267 1.05598 1.06270 1.76110 1.21520 0.99821 0.84124 0.96013 1.20909 0.90780 1.02058 0.99823 1.19621 0.96062 0.93755 0.95639 1.21258 0.94688 0.98780 0.97492 1.20944 0.92873 0.98106 0.99973 1.20638 0.86784 0.98527 1.00121 1.98392 1.12540 1.98022 1.93199 1.20674 0.91295 0.94610 0.98976 1.98412 1.64302 1.56998 1.81375 1.19614 0.90519 0.98085 0.99076 1.20464 0.81088 0.98741 0.97220 0.93009 0.95816 0.95753 0.90070 0.90199 0.91160 0.88033 0.89165 0.89300 0.84376 0.84016 0.87276 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.66 4.06 -27.88 -0.11 -2.78 16 11 C 0.52 9.94 7.72 -10.98 -0.08 9.86 16 12 O -0.53 -12.11 15.47 5.56 0.09 -12.02 16 13 N -0.63 -9.01 2.94 -174.57 -0.51 -9.53 16 14 C 0.11 1.24 6.44 -3.75 -0.02 1.22 16 15 C -0.10 -0.89 5.87 -28.04 -0.16 -1.06 16 16 C -0.05 -0.49 5.76 -104.60 -0.60 -1.09 16 17 C -0.10 -0.81 9.59 -39.42 -0.38 -1.19 16 18 C -0.10 -0.81 9.83 -39.66 -0.39 -1.20 16 19 C -0.03 -0.33 6.32 -39.56 -0.25 -0.58 16 20 Cl -0.05 -0.48 27.95 -51.86 -1.45 -1.93 16 21 C -0.03 -0.30 6.31 -39.34 -0.25 -0.55 16 22 Cl -0.04 -0.45 26.44 -51.86 -1.37 -1.82 16 23 C -0.07 -0.79 5.81 -104.69 -0.61 -1.40 16 24 C 0.15 1.79 5.22 -5.20 -0.03 1.77 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 29 H 0.08 1.52 7.57 -51.93 -0.39 1.12 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.31 7.07 -51.93 -0.37 0.94 16 32 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.14 0.71 8.05 -52.49 -0.42 0.29 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.11 1.39 5.62 -51.93 -0.29 1.10 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -33.38 337.98 -10.25 -43.63 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.39 Total: -3.77 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.42 Total: -9.71 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.22 Total: -36.16 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.82 Total: -3.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.38 -10.25 -43.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597963946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.420 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds