Wall clock time and date at job start Tue Mar 31 2020 15:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46573 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72068 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47229 * 121.34144 * 179.97438 * 13 11 10 15 15 C 1.52787 * 107.91140 * 115.75095 * 14 13 11 16 16 C 1.50602 * 110.85968 * 47.47289 * 15 14 13 17 17 C 1.38994 * 117.60280 * 159.95343 * 16 15 14 18 18 C 1.37901 * 120.62750 * 179.50411 * 17 16 15 19 19 C 1.38350 * 119.82964 * 359.93472 * 18 17 16 20 20 Cl 1.73603 * 120.16369 * 180.22455 * 19 18 17 21 21 C 1.38190 * 119.67649 * 0.25166 * 19 18 17 22 22 Cl 1.73598 * 119.76999 * 180.02562 * 21 19 18 23 23 C 1.37668 * 122.85681 * 339.85081 * 16 15 14 24 24 C 1.46692 * 121.33887 * 359.72023 * 13 11 10 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.08995 * 109.77965 * 235.35855 * 14 13 11 31 31 H 1.09005 * 109.77135 * 356.14963 * 14 13 11 32 32 H 1.08997 * 109.19579 * 167.82571 * 15 14 13 33 33 H 1.08997 * 109.20007 * 287.16285 * 15 14 13 34 34 H 1.07996 * 119.68850 * 359.50244 * 17 16 15 35 35 H 1.08001 * 120.08214 * 179.91749 * 18 17 16 36 36 H 1.09003 * 109.43582 * 344.50311 * 24 13 11 37 37 H 1.09002 * 109.43894 * 104.37490 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0045 12 8 0.2789 -4.9672 0.0101 13 7 2.1655 -6.1344 0.0052 14 6 1.4594 -7.4263 0.0075 15 6 1.7869 -8.1431 -1.3015 16 6 3.2673 -8.1092 -1.5757 17 6 3.7797 -9.0485 -2.4629 18 6 5.1246 -9.0673 -2.7669 19 6 5.9745 -8.1430 -2.1860 20 17 7.6681 -8.1552 -2.5670 21 6 5.4687 -7.2104 -1.3005 22 17 6.5328 -6.0491 -0.5706 23 6 4.1146 -7.1956 -0.9903 24 6 3.6320 -6.1687 -0.0020 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 1.7951 -8.0286 0.8517 31 1 0.3846 -7.2590 0.0774 32 1 1.4585 -9.1803 -1.2340 33 1 1.2600 -7.6529 -2.1201 34 1 3.1182 -9.7704 -2.9186 35 1 5.5135 -9.8019 -3.4566 36 1 4.0164 -5.1879 -0.2819 37 1 3.9937 -6.4289 0.9928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597963946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:17 Heat of formation + Delta-G solvation = -54.100188 kcal Electronic energy + Delta-G solvation = -22679.329381 eV Core-core repulsion = 19085.759165 eV Total energy + Delta-G solvation = -3593.570216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69096 -40.30169 -37.97936 -37.60886 -36.85644 -35.62486 -34.08564 -32.89368 -32.47172 -30.41292 -28.00185 -26.80924 -25.03062 -23.68247 -23.32915 -21.84852 -19.73176 -18.87694 -18.25170 -17.73377 -17.24808 -16.94949 -16.43035 -16.39084 -16.29081 -15.79139 -15.08715 -14.84105 -14.73481 -14.36849 -14.22716 -13.98774 -13.90057 -13.50246 -13.21657 -13.18140 -12.86472 -12.84893 -12.61452 -12.46743 -12.25633 -12.00588 -11.97489 -11.90725 -11.79243 -11.60077 -11.29481 -10.77068 -10.57998 -9.96523 -9.71102 -9.58842 -8.18562 -6.32222 -0.12675 -0.01357 0.78528 1.16828 1.41753 1.42827 1.56184 1.60575 1.90052 2.32651 2.42452 3.14587 3.33697 3.48816 3.73205 3.81272 3.98851 4.05100 4.17376 4.28817 4.32924 4.39669 4.41503 4.50286 4.59668 4.74038 4.75157 4.90356 4.99478 5.03549 5.07424 5.31053 5.44042 5.51159 5.57446 5.61022 5.83960 6.16927 6.27318 6.85500 7.16954 7.37894 8.94279 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003406 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.138753 B = 8217.973317 C = 9771.473045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.045 3.955 10 C -0.120 4.120 11 C 0.519 3.481 12 O -0.578 6.578 13 N -0.614 5.614 14 C 0.101 3.899 15 C -0.090 4.090 16 C -0.059 4.059 17 C -0.092 4.092 18 C -0.094 4.094 19 C -0.043 4.043 20 Cl -0.052 7.052 21 C -0.039 4.039 22 Cl -0.051 7.051 23 C -0.086 4.086 24 C 0.146 3.854 25 H 0.263 0.737 26 H -0.017 1.017 27 H -0.015 1.015 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.100 0.900 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.554 -24.747 -4.696 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.008 3.992 10 C -0.159 4.159 11 C 0.310 3.690 12 O -0.457 6.457 13 N -0.348 5.348 14 C -0.021 4.021 15 C -0.127 4.127 16 C -0.060 4.060 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.070 4.070 20 Cl -0.023 7.023 21 C -0.067 4.067 22 Cl -0.022 7.022 23 C -0.087 4.087 24 C 0.023 3.977 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.004 0.996 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.118 0.882 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.016 -24.527 -4.646 28.628 hybrid contribution 0.292 1.315 0.092 1.350 sum 14.307 -23.212 -4.554 27.644 Atomic orbital electron populations 1.70171 1.08203 1.27746 1.51470 1.26088 0.95709 1.03766 0.94614 0.85312 0.79273 0.78273 0.77649 1.17822 1.20558 1.20476 1.21712 0.93892 0.91632 1.50769 0.90876 1.18672 0.93546 0.92179 0.94848 1.21669 0.99476 0.90621 1.04179 1.21198 0.87598 0.86161 0.74046 1.90645 1.16074 1.87718 1.51266 1.48138 1.06839 1.05972 1.73849 1.21801 0.98627 0.82904 0.98758 1.20881 0.90524 1.03692 0.97626 1.19777 0.95999 0.94038 0.96155 1.21591 0.94989 0.98267 0.96124 1.21311 0.92766 0.97691 0.99491 1.20841 0.87099 0.98856 1.00240 1.98393 1.12686 1.98028 1.93149 1.20725 0.91157 0.95056 0.99767 1.98404 1.64609 1.57526 1.81637 1.19508 0.90928 0.98523 0.99788 1.20586 0.79165 0.99122 0.98810 0.92814 0.99812 0.99637 0.88042 0.88588 0.88578 0.89884 0.85364 0.90455 0.81016 0.81402 0.88180 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.29 21.45 0.28 -59.24 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.05 2.54 4.26 29.85 0.13 2.67 16 10 C -0.12 -4.99 4.06 29.85 0.12 -4.87 16 11 C 0.52 20.48 7.72 87.66 0.68 21.16 16 12 O -0.58 -28.02 15.47 -3.01 -0.05 -28.07 16 13 N -0.61 -17.39 2.94 -824.62 -2.42 -19.81 16 14 C 0.10 2.18 6.44 86.17 0.55 2.74 16 15 C -0.09 -1.40 5.87 29.75 0.17 -1.23 16 16 C -0.06 -0.98 5.76 -19.85 -0.11 -1.09 16 17 C -0.09 -1.05 9.59 22.37 0.21 -0.84 16 18 C -0.09 -1.17 9.83 22.22 0.22 -0.95 16 19 C -0.04 -0.74 6.32 22.28 0.14 -0.60 16 20 Cl -0.05 -0.89 27.95 -2.72 -0.08 -0.96 16 21 C -0.04 -0.78 6.31 22.42 0.14 -0.64 16 22 Cl -0.05 -1.08 26.44 -2.72 -0.07 -1.15 16 23 C -0.09 -1.73 5.81 -19.91 -0.12 -1.85 16 24 C 0.15 3.35 5.22 85.52 0.45 3.79 16 25 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 26 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 27 H -0.01 -0.94 8.10 -2.39 -0.02 -0.95 16 28 H 0.10 3.77 8.12 -2.39 -0.02 3.75 16 29 H 0.10 3.66 7.57 -2.39 -0.02 3.64 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.15 7.07 -2.38 -0.02 2.14 16 32 H 0.13 1.06 8.10 -2.39 -0.02 1.04 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.17 0.82 8.05 -2.91 -0.02 0.79 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.10 2.47 5.62 -2.39 -0.01 2.46 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.34 337.98 4.07 -72.27 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.10 Total: 2.68 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 3.28 Total: -12.48 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.14 Total: -79.05 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.15 Total: -2.12 kcal Total: -76.34 4.07 -72.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597963946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.170 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds