Wall clock time and date at job start Tue Mar 31 2020 15:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47272 * 274.45096 * 3 2 1 5 5 H 1.48501 * 109.46869 * 34.45004 * 3 2 1 6 6 H 1.48498 * 109.47205 * 154.45168 * 3 2 1 7 7 C 1.38956 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99888 * 354.47872 * 7 2 1 9 9 N 1.37096 * 120.00078 * 174.47099 * 7 2 1 10 10 C 1.34772 * 120.00094 * 184.91168 * 9 7 2 11 11 O 1.21296 * 119.99818 * 355.07728 * 10 9 7 12 12 C 1.50700 * 120.00271 * 175.35196 * 10 9 7 13 13 C 1.50705 * 110.01629 * 65.16427 * 12 10 9 14 14 C 1.38245 * 119.98984 * 359.65761 * 13 12 10 15 15 C 1.38197 * 120.02156 * 179.72666 * 14 13 12 16 16 C 1.38377 * 120.01838 * 0.54386 * 15 14 13 17 17 Cl 1.73597 * 120.01207 * 179.74786 * 16 15 14 18 18 C 1.38312 * 119.98160 * 359.72484 * 16 15 14 19 19 C 1.38331 * 119.99369 * 179.97438 * 13 12 10 20 20 Cl 1.73598 * 120.00939 * 0.02721 * 19 13 12 21 21 C 1.53879 * 110.03153 * 303.72560 * 12 10 9 22 22 C 1.54265 * 106.59425 * 240.71110 * 21 12 10 23 23 C 1.54885 * 104.19733 * 23.61205 * 22 21 12 24 24 C 1.54268 * 110.03327 * 186.55539 * 12 10 9 25 25 H 0.96998 * 120.00202 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00186 * 4.91671 * 9 7 2 27 27 H 1.07999 * 119.98921 * 359.97438 * 14 13 12 28 28 H 1.08006 * 119.98908 * 180.26940 * 15 14 13 29 29 H 1.08002 * 120.01027 * 179.97438 * 18 16 15 30 30 H 1.08996 * 110.03114 * 359.97438 * 21 12 10 31 31 H 1.08997 * 110.02954 * 121.42804 * 21 12 10 32 32 H 1.08995 * 110.48774 * 264.92614 * 22 21 12 33 33 H 1.09001 * 110.48088 * 142.28653 * 22 21 12 34 34 H 1.09007 * 110.75750 * 203.73835 * 23 22 21 35 35 H 1.09000 * 110.75766 * 80.37269 * 23 22 21 36 36 H 1.09001 * 110.48676 * 214.35249 * 24 12 10 37 37 H 1.08995 * 110.48707 * 336.86609 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4015 2.1008 -1.3958 5 1 1.4957 2.6237 0.7920 6 1 3.5895 1.4148 0.6038 7 6 2.0088 -1.2034 0.0005 8 1 1.4726 -2.1365 0.0909 9 7 3.3750 -1.2062 -0.1139 10 6 4.0406 -2.3739 -0.2130 11 8 3.4417 -3.4238 -0.1115 12 6 5.5298 -2.3752 -0.4438 13 6 6.2366 -1.7766 0.7450 14 6 5.5055 -1.3212 1.8263 15 6 6.1533 -0.7773 2.9192 16 6 7.5335 -0.6778 2.9270 17 17 8.3466 0.0114 4.2971 18 6 8.2650 -1.1282 1.8430 19 6 7.6163 -1.6769 0.7511 20 17 8.5336 -2.2406 -0.6107 21 6 5.8668 -1.5771 -1.7156 22 6 6.5562 -2.5609 -2.6834 23 6 6.0599 -3.9548 -2.2255 24 6 6.0262 -3.8161 -0.6833 25 1 -0.4850 0.8400 0.0004 26 1 3.8627 -0.3677 -0.1234 27 1 4.4280 -1.3942 1.8187 28 1 5.5819 -0.4257 3.7656 29 1 9.3422 -1.0504 1.8485 30 1 4.9531 -1.1892 -2.1660 31 1 6.5421 -0.7566 -1.4734 32 1 7.6399 -2.4920 -2.5895 33 1 6.2481 -2.3646 -3.7103 34 1 6.7606 -4.7330 -2.5282 35 1 5.0630 -4.1577 -2.6170 36 1 7.0243 -3.9500 -0.2663 37 1 5.3325 -4.5357 -0.2486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:11 Heat of formation + Delta-G solvation = -23.240706 kcal Electronic energy + Delta-G solvation = -24084.314642 eV Core-core repulsion = 20492.082593 eV Total energy + Delta-G solvation = -3592.232049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68651 -38.55020 -37.09668 -36.40288 -36.26054 -34.12908 -32.14181 -31.41132 -30.93571 -28.45229 -27.77410 -25.06501 -23.06151 -22.55576 -20.98874 -20.40793 -19.06157 -18.15784 -17.47013 -16.58295 -15.84184 -15.30197 -14.99565 -14.93939 -14.62320 -14.11638 -14.07185 -13.88107 -13.28585 -13.14694 -12.65577 -12.63037 -12.25445 -12.17021 -11.94997 -11.55606 -11.32068 -11.24542 -11.11690 -10.97723 -10.90722 -10.76395 -10.71481 -10.64361 -10.54208 -10.06366 -9.83223 -9.62105 -9.01469 -8.60462 -8.57688 -8.25630 -6.39737 -3.91488 0.89643 1.03272 1.72925 2.19507 2.97750 3.01570 3.10980 3.36674 3.55855 4.03137 4.34706 4.59639 4.72548 4.82084 4.88446 4.93479 5.15051 5.20538 5.27502 5.33323 5.65436 5.71508 5.72655 5.81559 5.83834 5.87554 5.94693 6.05974 6.11431 6.14833 6.29865 6.36310 6.42650 6.54157 6.60168 6.67338 7.48487 8.04600 8.48970 8.85119 9.32850 9.70178 10.72765 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.006293 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.039071 B = 4448.446790 C = 6305.289180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.048 3.952 3 Si 0.868 3.132 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.586 5.586 10 C 0.465 3.535 11 O -0.564 6.564 12 C -0.039 4.039 13 C -0.047 4.047 14 C -0.096 4.096 15 C -0.099 4.099 16 C -0.032 4.032 17 Cl -0.067 7.067 18 C -0.105 4.105 19 C -0.023 4.023 20 Cl -0.047 7.047 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.106 4.106 25 H 0.274 0.726 26 H 0.372 0.628 27 H 0.158 0.842 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.573 0.130 1.427 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.156 4.156 3 Si 0.694 3.306 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.225 5.225 10 C 0.251 3.749 11 O -0.446 6.446 12 C -0.042 4.042 13 C -0.048 4.048 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.058 4.058 17 Cl -0.038 7.038 18 C -0.124 4.124 19 C -0.050 4.050 20 Cl -0.018 7.018 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.143 4.143 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.084 -0.433 1.485 18.150 hybrid contribution 0.687 1.604 0.126 1.749 sum 18.771 1.170 1.611 18.877 Atomic orbital electron populations 1.69619 1.05639 1.27605 1.48518 1.25005 0.95392 0.97845 0.97373 0.86817 0.80071 0.84469 0.79249 1.19476 1.19889 1.19176 1.19442 0.79486 0.96780 1.48127 0.86099 1.42365 1.08007 1.06285 1.65845 1.19309 0.87362 0.84502 0.83736 1.90551 1.68779 1.31011 1.54302 1.20428 0.93916 0.97392 0.92492 1.19779 0.91271 0.97399 0.96384 1.21679 1.02303 0.95908 0.91529 1.21213 0.92083 0.98978 0.99475 1.20731 0.92704 1.02275 0.90140 1.98368 1.79411 1.83221 1.42812 1.20797 1.00590 0.99688 0.91370 1.20574 0.91367 1.02515 0.90564 1.98352 1.73995 1.87396 1.42082 1.22339 1.01228 0.97931 0.93670 1.22503 0.99848 0.95078 0.98350 1.22416 1.01331 0.96383 0.95402 1.22459 1.01381 0.93819 0.96670 0.91498 0.79454 0.82417 0.84137 0.84035 0.90566 0.91299 0.91487 0.91865 0.91805 0.90979 0.90994 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.72 13.96 55.50 0.77 -23.95 16 2 C 0.05 1.26 5.50 -17.47 -0.10 1.17 16 3 Si 0.87 18.85 27.79 -169.99 -4.72 14.12 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.30 6.47 56.52 0.37 -4.94 16 7 C -0.31 -8.34 10.15 -14.93 -0.15 -8.50 16 8 H 0.12 3.73 7.40 -52.49 -0.39 3.34 16 9 N -0.59 -13.33 3.31 -10.96 -0.04 -13.36 16 10 C 0.47 10.13 4.99 -10.99 -0.05 10.08 16 11 O -0.56 -14.44 14.96 5.54 0.08 -14.36 16 12 C -0.04 -0.65 0.53 -155.69 -0.08 -0.74 16 13 C -0.05 -0.73 4.66 -104.58 -0.49 -1.22 16 14 C -0.10 -1.54 8.65 -39.59 -0.34 -1.89 16 15 C -0.10 -1.36 9.83 -39.55 -0.39 -1.74 16 16 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 17 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 18 C -0.11 -1.26 9.62 -39.51 -0.38 -1.64 16 19 C -0.02 -0.31 5.56 -39.50 -0.22 -0.53 16 20 Cl -0.05 -0.55 20.90 -51.86 -1.08 -1.64 16 21 C -0.11 -1.73 5.08 -25.61 -0.13 -1.86 16 22 C -0.12 -1.57 6.17 -25.08 -0.15 -1.72 16 23 C -0.12 -1.65 6.91 -24.74 -0.17 -1.82 16 24 C -0.11 -1.66 5.16 -25.07 -0.13 -1.79 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.37 7.73 5.25 -40.82 -0.21 7.51 16 27 H 0.16 2.93 5.63 -52.49 -0.30 2.63 16 28 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.08 1.26 7.46 -51.93 -0.39 0.87 16 31 H 0.07 0.96 6.73 -51.93 -0.35 0.61 16 32 H 0.07 0.79 5.43 -51.93 -0.28 0.50 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.01 5.53 -51.93 -0.29 0.73 16 37 H 0.09 1.59 6.77 -51.93 -0.35 1.24 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -28.88 318.73 -8.56 -37.44 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.84 Total: 12.04 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.04 Total: -12.85 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.74 Total: -37.31 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.72 Total: 14.12 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -2.59 Total: -3.88 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.88 -8.56 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.201 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds