Wall clock time and date at job start Tue Mar 31 2020 15:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47272 * 274.45096 * 3 2 1 5 5 H 1.48501 * 109.46869 * 34.45004 * 3 2 1 6 6 H 1.48498 * 109.47205 * 154.45168 * 3 2 1 7 7 C 1.38956 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99888 * 354.47872 * 7 2 1 9 9 N 1.37096 * 120.00078 * 174.47099 * 7 2 1 10 10 C 1.34772 * 120.00094 * 184.91168 * 9 7 2 11 11 O 1.21296 * 119.99818 * 355.07728 * 10 9 7 12 12 C 1.50700 * 120.00271 * 175.35196 * 10 9 7 13 13 C 1.50705 * 110.01629 * 65.16427 * 12 10 9 14 14 C 1.38245 * 119.98984 * 359.65761 * 13 12 10 15 15 C 1.38197 * 120.02156 * 179.72666 * 14 13 12 16 16 C 1.38377 * 120.01838 * 0.54386 * 15 14 13 17 17 Cl 1.73597 * 120.01207 * 179.74786 * 16 15 14 18 18 C 1.38312 * 119.98160 * 359.72484 * 16 15 14 19 19 C 1.38331 * 119.99369 * 179.97438 * 13 12 10 20 20 Cl 1.73598 * 120.00939 * 0.02721 * 19 13 12 21 21 C 1.53879 * 110.03153 * 303.72560 * 12 10 9 22 22 C 1.54265 * 106.59425 * 240.71110 * 21 12 10 23 23 C 1.54885 * 104.19733 * 23.61205 * 22 21 12 24 24 C 1.54268 * 110.03327 * 186.55539 * 12 10 9 25 25 H 0.96998 * 120.00202 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00186 * 4.91671 * 9 7 2 27 27 H 1.07999 * 119.98921 * 359.97438 * 14 13 12 28 28 H 1.08006 * 119.98908 * 180.26940 * 15 14 13 29 29 H 1.08002 * 120.01027 * 179.97438 * 18 16 15 30 30 H 1.08996 * 110.03114 * 359.97438 * 21 12 10 31 31 H 1.08997 * 110.02954 * 121.42804 * 21 12 10 32 32 H 1.08995 * 110.48774 * 264.92614 * 22 21 12 33 33 H 1.09001 * 110.48088 * 142.28653 * 22 21 12 34 34 H 1.09007 * 110.75750 * 203.73835 * 23 22 21 35 35 H 1.09000 * 110.75766 * 80.37269 * 23 22 21 36 36 H 1.09001 * 110.48676 * 214.35249 * 24 12 10 37 37 H 1.08995 * 110.48707 * 336.86609 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4015 2.1008 -1.3958 5 1 1.4957 2.6237 0.7920 6 1 3.5895 1.4148 0.6038 7 6 2.0088 -1.2034 0.0005 8 1 1.4726 -2.1365 0.0909 9 7 3.3750 -1.2062 -0.1139 10 6 4.0406 -2.3739 -0.2130 11 8 3.4417 -3.4238 -0.1115 12 6 5.5298 -2.3752 -0.4438 13 6 6.2366 -1.7766 0.7450 14 6 5.5055 -1.3212 1.8263 15 6 6.1533 -0.7773 2.9192 16 6 7.5335 -0.6778 2.9270 17 17 8.3466 0.0114 4.2971 18 6 8.2650 -1.1282 1.8430 19 6 7.6163 -1.6769 0.7511 20 17 8.5336 -2.2406 -0.6107 21 6 5.8668 -1.5771 -1.7156 22 6 6.5562 -2.5609 -2.6834 23 6 6.0599 -3.9548 -2.2255 24 6 6.0262 -3.8161 -0.6833 25 1 -0.4850 0.8400 0.0004 26 1 3.8627 -0.3677 -0.1234 27 1 4.4280 -1.3942 1.8187 28 1 5.5819 -0.4257 3.7656 29 1 9.3422 -1.0504 1.8485 30 1 4.9531 -1.1892 -2.1660 31 1 6.5421 -0.7566 -1.4734 32 1 7.6399 -2.4920 -2.5895 33 1 6.2481 -2.3646 -3.7103 34 1 6.7606 -4.7330 -2.5282 35 1 5.0630 -4.1577 -2.6170 36 1 7.0243 -3.9500 -0.2663 37 1 5.3325 -4.5357 -0.2486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601026749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:10 Heat of formation + Delta-G solvation = -38.954101 kcal Electronic energy + Delta-G solvation = -24084.996026 eV Core-core repulsion = 20492.082593 eV Total energy + Delta-G solvation = -3592.913433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04318 -39.91268 -38.35597 -37.47909 -37.32354 -36.09990 -33.93705 -32.79277 -32.00807 -29.69361 -29.05508 -26.90875 -24.27621 -23.66317 -22.51908 -21.59323 -20.89788 -19.73113 -18.76843 -17.92630 -17.15405 -16.83692 -16.48857 -16.10657 -15.80105 -15.59389 -15.34600 -15.19687 -14.81856 -14.47638 -14.39973 -14.09550 -13.69838 -13.29006 -13.12422 -12.94348 -12.72625 -12.45951 -12.38648 -12.28210 -12.03691 -12.01469 -12.00250 -11.96459 -11.84743 -11.73165 -11.52288 -10.90709 -10.42630 -10.27384 -10.05655 -9.66448 -8.45864 -6.05661 -0.18111 -0.03090 0.74043 1.19746 1.25339 1.27332 1.36886 1.82142 2.16427 2.28176 2.72777 3.06944 3.40897 3.51731 3.66950 3.68293 3.89374 4.01979 4.11319 4.23748 4.34795 4.48523 4.51791 4.62656 4.64858 4.76391 4.80025 4.93475 4.97866 5.06312 5.14471 5.18896 5.22856 5.33023 5.42623 5.48006 5.52609 5.91189 6.51564 6.81471 7.31918 7.84583 8.71146 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.006293 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.039071 B = 4448.446790 C = 6305.289180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.002 4.002 3 Si 0.942 3.058 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.237 1.237 7 C -0.327 4.327 8 H 0.062 0.938 9 N -0.583 5.583 10 C 0.470 3.530 11 O -0.611 6.611 12 C -0.032 4.032 13 C -0.061 4.061 14 C -0.119 4.119 15 C -0.098 4.098 16 C -0.028 4.028 17 Cl -0.048 7.048 18 C -0.091 4.091 19 C -0.020 4.020 20 Cl -0.028 7.028 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.106 4.106 25 H 0.280 0.720 26 H 0.385 0.615 27 H 0.124 0.876 28 H 0.152 0.848 29 H 0.171 0.829 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.092 2.071 1.261 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.763 3.237 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.161 1.161 7 C -0.455 4.455 8 H 0.080 0.920 9 N -0.223 5.223 10 C 0.258 3.742 11 O -0.496 6.496 12 C -0.035 4.035 13 C -0.062 4.062 14 C -0.138 4.138 15 C -0.117 4.117 16 C -0.055 4.055 17 Cl -0.019 7.019 18 C -0.110 4.110 19 C -0.047 4.047 20 Cl 0.001 6.999 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.143 4.143 25 H 0.090 0.910 26 H 0.221 0.779 27 H 0.142 0.858 28 H 0.169 0.831 29 H 0.189 0.811 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.627 1.503 1.318 22.715 hybrid contribution -0.722 0.861 0.247 1.151 sum 21.905 2.365 1.565 22.088 Atomic orbital electron populations 1.69778 1.07845 1.29198 1.49675 1.25905 0.96240 1.01991 0.96068 0.85661 0.79772 0.78169 0.80117 1.18088 1.19340 1.16075 1.19004 0.81448 0.95168 1.49928 0.92021 1.42138 1.06383 1.07308 1.66445 1.20311 0.89634 0.83320 0.80977 1.90526 1.70677 1.32714 1.55681 1.20354 0.89690 0.98956 0.94516 1.19611 0.92427 0.98582 0.95615 1.21414 1.00875 0.98268 0.93226 1.21276 0.92986 0.98461 0.98934 1.20779 0.92270 1.01629 0.90861 1.98382 1.78832 1.82825 1.41851 1.21094 1.01905 0.97768 0.90195 1.20511 0.90344 1.02287 0.91589 1.98354 1.73164 1.87147 1.41233 1.22402 1.01186 0.98842 0.92963 1.22500 1.00758 0.93208 0.98405 1.22427 1.00889 0.98285 0.93897 1.22486 1.01517 0.92246 0.98072 0.91027 0.77908 0.85802 0.83070 0.81123 0.92344 0.89246 0.89362 0.90512 0.88956 0.93490 0.88716 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.75 13.96 21.66 0.30 -54.45 16 2 C 0.00 -0.11 5.50 84.93 0.47 0.36 16 3 Si 0.94 38.79 27.79 68.60 1.91 40.70 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.24 -8.54 6.47 99.48 0.64 -7.90 16 7 C -0.33 -18.78 10.15 84.04 0.85 -17.93 16 8 H 0.06 4.20 7.40 -2.91 -0.02 4.18 16 9 N -0.58 -27.62 3.31 -306.98 -1.02 -28.63 16 10 C 0.47 21.53 4.99 87.66 0.44 21.97 16 11 O -0.61 -33.79 14.96 -3.08 -0.05 -33.84 16 12 C -0.03 -1.07 0.53 -52.95 -0.03 -1.09 16 13 C -0.06 -1.82 4.66 -19.84 -0.09 -1.91 16 14 C -0.12 -3.80 8.65 22.26 0.19 -3.61 16 15 C -0.10 -2.52 9.83 22.29 0.22 -2.30 16 16 C -0.03 -0.62 6.32 22.32 0.14 -0.48 16 17 Cl -0.05 -0.89 28.96 -2.72 -0.08 -0.97 16 18 C -0.09 -1.81 9.62 22.32 0.21 -1.60 16 19 C -0.02 -0.47 5.56 22.32 0.12 -0.35 16 20 Cl -0.03 -0.54 20.90 -2.72 -0.06 -0.60 16 21 C -0.12 -3.31 5.08 31.32 0.16 -3.15 16 22 C -0.11 -2.60 6.17 31.67 0.20 -2.40 16 23 C -0.12 -3.14 6.91 31.88 0.22 -2.92 16 24 C -0.11 -3.28 5.16 31.67 0.16 -3.12 16 25 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.39 16.03 5.25 -92.71 -0.49 15.55 16 27 H 0.12 4.82 5.63 -2.91 -0.02 4.80 16 28 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.06 1.88 7.46 -2.39 -0.02 1.86 16 31 H 0.09 2.19 6.73 -2.39 -0.02 2.17 16 32 H 0.09 1.69 5.43 -2.39 -0.01 1.68 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 2.48 5.53 -2.39 -0.01 2.46 16 37 H 0.06 2.12 6.77 -2.39 -0.02 2.11 16 Total: -1.00 -68.54 318.73 4.86 -63.68 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.58 Total: 32.66 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.27 Total: -18.54 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -0.71 Total: -83.08 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.05 Total: -33.84 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.91 Total: 40.70 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.14 Total: -1.57 kcal Total: -68.54 4.86 -63.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.724 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds