Wall clock time and date at job start Tue Mar 31 2020 15:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48504 * 109.47065 * 270.00080 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99950 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00124 * 3 2 1 7 7 C 1.38796 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00030 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00446 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00312 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99876 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00392 * 180.02562 * 11 10 9 14 14 C 1.40126 * 120.00141 * 185.27272 * 13 11 10 15 15 C 1.39534 * 119.82899 * 213.37717 * 14 13 11 16 16 C 1.36484 * 120.74917 * 180.02562 * 15 14 13 17 17 C 1.39290 * 120.08938 * 359.97438 * 16 15 14 18 18 C 1.40785 * 119.63180 * 0.18257 * 17 16 15 19 19 C 1.45945 * 106.34662 * 180.30131 * 18 17 16 20 20 N 1.30246 * 107.79691 * 359.74542 * 19 18 17 21 21 N 1.37204 * 133.67102 * 180.02562 * 17 16 15 22 22 C 1.46499 * 125.46589 * 359.97129 * 21 17 16 23 23 F 1.39894 * 109.47208 * 209.72408 * 22 21 17 24 24 F 1.39901 * 109.47033 * 329.72537 * 22 21 17 25 25 C 1.38030 * 119.82871 * 33.80474 * 14 13 11 26 26 H 0.97001 * 120.00577 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46808 * 60.00026 * 10 9 7 28 28 H 1.08995 * 109.47034 * 300.00113 * 10 9 7 29 29 H 0.97004 * 119.99593 * 5.27510 * 13 11 10 30 30 H 1.07999 * 119.62780 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.95520 * 180.02562 * 16 15 14 32 32 H 1.07996 * 126.09960 * 179.72054 * 19 18 17 33 33 H 1.08994 * 109.46847 * 89.72210 * 22 21 17 34 34 H 1.07997 * 120.26898 * 359.48276 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3442 -2.2960 -0.0014 13 7 6.0459 -4.4945 -0.0011 14 6 7.4232 -4.7268 0.1105 15 6 7.9986 -5.8165 -0.5441 16 6 9.3379 -6.0608 -0.4478 17 6 10.1487 -5.2185 0.3095 18 6 9.5780 -4.1180 0.9768 19 6 10.6734 -3.4412 1.6639 20 7 11.7681 -4.1012 1.4144 21 7 11.4911 -5.1983 0.5925 22 6 12.4769 -6.1668 0.1064 23 9 13.5120 -6.2871 1.0398 24 9 11.8611 -7.4106 -0.0699 25 6 8.2024 -3.8816 0.8746 26 1 -0.4851 0.8400 -0.0004 27 1 3.6435 -3.4316 -0.8907 28 1 3.6441 -3.4313 0.8893 29 1 5.4326 -5.2421 -0.0787 30 1 7.3771 -6.4742 -1.1336 31 1 9.7699 -6.9077 -0.9602 32 1 10.5909 -2.5515 2.2705 33 1 12.8837 -5.8247 -0.8452 34 1 7.7561 -3.0378 1.3796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610962270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:44 Heat of formation + Delta-G solvation = -29.917561 kcal Electronic energy + Delta-G solvation = -23772.060679 eV Core-core repulsion = 19662.078878 eV Total energy + Delta-G solvation = -4109.981802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.69981 -47.82391 -41.58492 -39.95629 -37.33498 -34.28016 -33.30391 -32.49326 -30.55032 -30.28182 -28.32023 -26.00671 -25.65476 -23.78059 -22.36293 -21.56632 -20.56523 -18.70485 -18.46595 -18.43095 -17.76355 -17.32819 -16.59729 -16.16073 -15.64729 -15.17901 -15.06611 -15.03049 -14.67687 -14.53950 -14.16265 -14.02466 -13.86770 -13.75499 -13.60819 -13.18125 -12.84794 -12.67123 -12.56809 -12.07534 -11.60199 -11.32358 -11.26474 -11.05635 -10.75554 -10.65960 -10.02943 -9.89839 -9.64855 -9.05625 -8.94516 -8.58990 -7.85994 -6.99485 -6.33979 -4.07025 0.60078 1.07713 1.43929 2.11757 2.61028 2.71766 3.06408 3.17089 3.29380 3.45653 3.52495 3.54470 3.55691 4.02229 4.11843 4.27844 4.38315 4.58817 4.69687 4.74590 4.98213 5.05060 5.07554 5.16631 5.38920 5.63176 5.66932 5.81925 5.89750 6.03652 6.10928 6.15659 6.34072 6.74772 7.13811 7.34430 7.88789 8.22459 8.36429 9.11772 10.75122 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.002316 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.183438 B =12085.608774 C =12746.418814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.125 4.125 11 C 0.530 3.470 12 O -0.499 6.499 13 N -0.677 5.677 14 C 0.123 3.877 15 C -0.086 4.086 16 C -0.120 4.120 17 C 0.114 3.886 18 C -0.149 4.149 19 C 0.099 3.901 20 N -0.239 5.239 21 N -0.473 5.473 22 C 0.520 3.480 23 F -0.177 7.177 24 F -0.183 7.183 25 C -0.045 4.045 26 H 0.271 0.729 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.412 0.588 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.206 0.794 33 H 0.149 0.851 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.040 -15.131 -0.468 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.088 5.912 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.372 6.372 13 N -0.324 5.324 14 C 0.028 3.972 15 C -0.109 4.109 16 C -0.143 4.143 17 C 0.004 3.996 18 C -0.157 4.157 19 C -0.101 4.101 20 N -0.049 5.049 21 N -0.273 5.273 22 C 0.386 3.614 23 F -0.158 7.158 24 F -0.165 7.165 25 C -0.068 4.068 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.248 0.752 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.223 0.777 33 H 0.166 0.834 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 24.490 -13.682 -0.311 28.055 hybrid contribution -1.948 -0.866 -0.154 2.137 sum 22.542 -14.548 -0.464 26.833 Atomic orbital electron populations 1.69930 1.05919 1.27850 1.47802 1.24712 0.94461 0.98991 0.93132 0.86739 0.81875 0.83293 0.79959 1.19190 1.19894 1.15903 1.22293 0.88095 0.97591 1.59078 0.89286 1.84810 1.09537 0.99380 1.97459 1.23284 0.93001 1.05002 1.06250 1.20509 0.91045 0.81831 0.74843 1.90721 1.58513 1.41921 1.46036 1.43589 1.05259 1.09190 1.74360 1.17435 0.84198 0.97220 0.98390 1.20533 0.94241 0.97707 0.98381 1.19689 0.92467 1.00206 1.01888 1.18652 0.83529 0.97813 0.99644 1.19741 0.94386 0.97600 1.03973 1.25341 0.87700 0.99134 0.97899 1.76691 1.23954 0.96494 1.07712 1.49436 1.05523 1.24881 1.47455 1.21137 0.75538 0.74644 0.90116 1.93111 1.57829 1.95549 1.69348 1.93102 1.83930 1.43897 1.95536 1.20651 0.90524 0.99668 0.95947 0.91867 0.88117 0.87937 0.75213 0.84500 0.84853 0.77702 0.83440 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.97 55.49 0.78 -25.15 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 21.17 27.74 -169.99 -4.71 16.45 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 7 C -0.52 -14.52 10.04 30.94 0.31 -14.21 16 8 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 9 S -0.14 -3.31 18.55 -107.50 -1.99 -5.30 16 10 C -0.12 -2.19 6.16 36.00 0.22 -1.97 16 11 C 0.53 8.47 7.58 -10.99 -0.08 8.39 16 12 O -0.50 -9.68 13.57 5.54 0.08 -9.60 16 13 N -0.68 -7.85 5.34 -9.85 -0.05 -7.90 16 14 C 0.12 1.45 6.27 -83.66 -0.52 0.92 16 15 C -0.09 -0.80 9.87 -39.73 -0.39 -1.19 16 16 C -0.12 -1.14 9.49 -39.82 -0.38 -1.51 16 17 C 0.11 1.29 6.70 -84.11 -0.56 0.72 16 18 C -0.15 -1.80 6.36 -105.21 -0.67 -2.47 16 19 C 0.10 1.05 12.28 -15.14 -0.19 0.86 16 20 N -0.24 -2.80 12.21 31.87 0.39 -2.41 16 21 N -0.47 -5.14 4.02 -63.94 -0.26 -5.39 16 22 C 0.52 4.05 6.61 59.85 0.40 4.45 16 23 F -0.18 -1.67 17.34 2.25 0.04 -1.63 16 24 F -0.18 -1.47 15.57 2.25 0.04 -1.43 16 25 C -0.04 -0.58 8.72 -39.01 -0.34 -0.92 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.41 3.33 8.82 -40.82 -0.36 2.97 16 30 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.13 0.98 6.97 -52.48 -0.37 0.61 16 32 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.15 2.10 6.41 -52.49 -0.34 1.77 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -34.87 323.92 -5.88 -40.75 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.75 Total: 1.02 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.30 Total: -4.29 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.85 Total: -40.85 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -1.99 Total: -5.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.87 -5.88 -40.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610962270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.835 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds