Wall clock time and date at job start Tue Mar 31 2020 15:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48504 * 109.47065 * 270.00080 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99950 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00124 * 3 2 1 7 7 C 1.38796 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00030 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00446 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00312 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99876 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00392 * 180.02562 * 11 10 9 14 14 C 1.40126 * 120.00141 * 185.27272 * 13 11 10 15 15 C 1.39534 * 119.82899 * 213.37717 * 14 13 11 16 16 C 1.36484 * 120.74917 * 180.02562 * 15 14 13 17 17 C 1.39290 * 120.08938 * 359.97438 * 16 15 14 18 18 C 1.40785 * 119.63180 * 0.18257 * 17 16 15 19 19 C 1.45945 * 106.34662 * 180.30131 * 18 17 16 20 20 N 1.30246 * 107.79691 * 359.74542 * 19 18 17 21 21 N 1.37204 * 133.67102 * 180.02562 * 17 16 15 22 22 C 1.46499 * 125.46589 * 359.97129 * 21 17 16 23 23 F 1.39894 * 109.47208 * 209.72408 * 22 21 17 24 24 F 1.39901 * 109.47033 * 329.72537 * 22 21 17 25 25 C 1.38030 * 119.82871 * 33.80474 * 14 13 11 26 26 H 0.97001 * 120.00577 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46808 * 60.00026 * 10 9 7 28 28 H 1.08995 * 109.47034 * 300.00113 * 10 9 7 29 29 H 0.97004 * 119.99593 * 5.27510 * 13 11 10 30 30 H 1.07999 * 119.62780 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.95520 * 180.02562 * 16 15 14 32 32 H 1.07996 * 126.09960 * 179.72054 * 19 18 17 33 33 H 1.08994 * 109.46847 * 89.72210 * 22 21 17 34 34 H 1.07997 * 120.26898 * 359.48276 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3442 -2.2960 -0.0014 13 7 6.0459 -4.4945 -0.0011 14 6 7.4232 -4.7268 0.1105 15 6 7.9986 -5.8165 -0.5441 16 6 9.3379 -6.0608 -0.4478 17 6 10.1487 -5.2185 0.3095 18 6 9.5780 -4.1180 0.9768 19 6 10.6734 -3.4412 1.6639 20 7 11.7681 -4.1012 1.4144 21 7 11.4911 -5.1983 0.5925 22 6 12.4769 -6.1668 0.1064 23 9 13.5120 -6.2871 1.0398 24 9 11.8611 -7.4106 -0.0699 25 6 8.2024 -3.8816 0.8746 26 1 -0.4851 0.8400 -0.0004 27 1 3.6435 -3.4316 -0.8907 28 1 3.6441 -3.4313 0.8893 29 1 5.4326 -5.2421 -0.0787 30 1 7.3771 -6.4742 -1.1336 31 1 9.7699 -6.9077 -0.9602 32 1 10.5909 -2.5515 2.2705 33 1 12.8837 -5.8247 -0.8452 34 1 7.7561 -3.0378 1.3796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610962270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:43 Heat of formation + Delta-G solvation = -53.867727 kcal Electronic energy + Delta-G solvation = -23773.099236 eV Core-core repulsion = 19662.078878 eV Total energy + Delta-G solvation = -4111.020359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.31754 -48.45442 -42.41126 -41.08245 -38.29973 -35.33330 -34.65260 -34.08601 -31.63226 -31.21764 -29.35114 -27.83322 -26.68219 -24.66311 -23.24314 -22.32215 -21.69894 -20.00389 -19.35166 -19.13764 -19.00114 -18.12985 -17.87418 -17.10368 -16.92810 -16.71535 -16.15539 -16.00305 -15.85885 -15.31121 -15.17830 -14.98916 -14.91182 -14.79874 -14.66325 -14.50833 -14.01166 -13.73739 -13.33530 -13.32351 -13.09416 -12.98698 -12.65653 -12.41548 -12.09633 -11.86110 -11.57091 -11.15686 -11.11217 -10.79274 -10.51974 -9.75373 -8.98709 -8.73928 -8.49819 -6.20292 -0.20097 0.18813 0.75921 0.98751 1.32054 1.33150 1.47558 1.51681 1.55705 2.12451 2.26274 2.53196 2.68774 2.71296 2.87791 2.88744 3.28856 3.57141 3.63542 3.76861 3.98308 4.02483 4.20667 4.24837 4.36199 4.49828 4.56690 4.83571 5.05296 5.17935 5.27749 5.32724 5.53896 5.72495 5.84007 6.14053 6.33423 6.36895 6.95556 7.08873 8.62361 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.002316 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.183438 B =12085.608774 C =12746.418814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.234 1.234 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.172 6.172 10 C -0.111 4.111 11 C 0.536 3.464 12 O -0.538 6.538 13 N -0.652 5.652 14 C 0.107 3.893 15 C -0.073 4.073 16 C -0.116 4.116 17 C 0.106 3.894 18 C -0.171 4.171 19 C 0.096 3.904 20 N -0.260 5.260 21 N -0.479 5.479 22 C 0.513 3.487 23 F -0.189 7.189 24 F -0.184 7.184 25 C -0.061 4.061 26 H 0.276 0.724 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.431 0.569 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.229 0.771 33 H 0.194 0.806 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.559 -16.690 -1.341 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.158 1.158 7 C -0.675 4.675 8 H 0.083 0.917 9 S 0.055 5.945 10 C -0.261 4.261 11 C 0.323 3.677 12 O -0.414 6.414 13 N -0.301 5.301 14 C 0.012 3.988 15 C -0.095 4.095 16 C -0.138 4.138 17 C -0.004 4.004 18 C -0.179 4.179 19 C -0.103 4.103 20 N -0.070 5.070 21 N -0.278 5.278 22 C 0.381 3.619 23 F -0.171 7.171 24 F -0.166 7.166 25 C -0.084 4.084 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.271 0.729 30 H 0.191 0.809 31 H 0.178 0.822 32 H 0.245 0.755 33 H 0.210 0.790 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 26.022 -15.304 -1.180 30.211 hybrid contribution -2.345 -0.590 0.126 2.421 sum 23.677 -15.893 -1.054 28.536 Atomic orbital electron populations 1.70012 1.07327 1.28981 1.49212 1.25559 0.95253 1.02271 0.93006 0.85881 0.80764 0.79677 0.80146 1.18813 1.18637 1.15813 1.22466 0.90289 0.96691 1.58068 0.91730 1.84728 1.06373 1.05842 1.97607 1.23250 0.94836 0.99958 1.08095 1.20127 0.89857 0.82843 0.74833 1.90721 1.58977 1.43470 1.48274 1.43217 1.05902 1.08190 1.72744 1.17622 0.83769 0.98205 0.99254 1.20846 0.94524 0.96739 0.97406 1.20041 0.92332 1.00312 1.01083 1.18975 0.83981 0.97849 0.99645 1.19916 0.94369 0.98624 1.04984 1.25784 0.87108 0.99660 0.97716 1.76645 1.24535 0.97290 1.08539 1.49741 1.05928 1.25014 1.47166 1.21898 0.74755 0.74188 0.91103 1.93086 1.58257 1.95577 1.70144 1.93094 1.83974 1.44029 1.95470 1.20570 0.91231 0.99693 0.96944 0.91430 0.86171 0.86230 0.72935 0.80920 0.82248 0.75460 0.79021 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 13.97 21.65 0.30 -54.52 16 2 C 0.04 2.55 5.50 84.86 0.47 3.01 16 3 Si 0.91 43.87 27.74 68.60 1.90 45.78 16 4 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.23 -11.14 6.74 99.48 0.67 -10.47 16 7 C -0.53 -29.57 10.04 67.95 0.68 -28.88 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -8.20 18.55 -56.49 -1.05 -9.25 16 10 C -0.11 -3.73 6.16 71.23 0.44 -3.29 16 11 C 0.54 16.42 7.58 87.66 0.66 17.09 16 12 O -0.54 -20.75 13.57 -3.08 -0.04 -20.79 16 13 N -0.65 -13.62 5.34 -303.47 -1.62 -15.24 16 14 C 0.11 2.29 6.27 38.08 0.24 2.53 16 15 C -0.07 -1.10 9.87 22.17 0.22 -0.88 16 16 C -0.12 -1.81 9.49 22.11 0.21 -1.60 16 17 C 0.11 2.21 6.70 39.18 0.26 2.47 16 18 C -0.17 -4.02 6.36 -20.24 -0.13 -4.15 16 19 C 0.10 2.01 12.28 86.93 1.07 3.08 16 20 N -0.26 -5.88 12.21 -53.08 -0.65 -6.53 16 21 N -0.48 -9.58 4.02 -356.21 -1.43 -11.01 16 22 C 0.51 6.81 6.61 127.77 0.85 7.66 16 23 F -0.19 -3.29 17.34 44.97 0.78 -2.51 16 24 F -0.18 -2.46 15.57 44.97 0.70 -1.76 16 25 C -0.06 -1.56 8.72 22.64 0.20 -1.36 16 26 H 0.28 15.31 8.31 -92.71 -0.77 14.53 16 27 H 0.12 3.62 8.14 -2.40 -0.02 3.60 16 28 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 29 H 0.43 5.54 8.82 -92.71 -0.82 4.72 16 30 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.16 1.65 6.97 -2.91 -0.02 1.63 16 32 H 0.23 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.19 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.13 3.72 6.41 -2.91 -0.02 3.70 16 Total: -1.00 -76.99 323.92 4.39 -72.61 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.33 Total: 7.56 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.16 Total: -4.33 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -3.40 Total: -87.30 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.04 Total: -20.79 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 1.48 Total: -4.28 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.78 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.05 Total: -9.25 kcal Total: -76.99 4.39 -72.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610962270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.740 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds