Wall clock time and date at job start Tue Mar 31 2020 14:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47085 * 239.99678 * 3 2 1 5 5 H 1.48501 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47220 * 119.99865 * 3 2 1 7 7 C 1.37877 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99822 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.52067 * 299.91719 * 9 7 2 11 11 C 1.53040 * 109.49717 * 179.84166 * 9 7 2 12 12 C 1.53038 * 109.53725 * 178.68400 * 11 9 7 13 13 C 1.52764 * 109.38634 * 61.23910 * 12 11 9 14 14 N 1.46925 * 109.00547 * 305.58940 * 13 12 11 15 15 C 1.34781 * 120.62896 * 233.58300 * 14 13 12 16 16 O 1.21402 * 119.99741 * 184.75570 * 15 14 13 17 17 C 1.49077 * 119.99974 * 4.75816 * 15 14 13 18 18 O 1.21639 * 119.99638 * 274.76242 * 17 15 14 19 19 C 1.41254 * 119.99681 * 94.76079 * 17 15 14 20 20 C 1.37637 * 125.47212 * 179.97438 * 19 17 15 21 21 C 1.36860 * 113.24112 * 180.02562 * 20 19 17 22 22 C 1.34524 * 115.13338 * 0.02562 * 21 20 19 23 23 Cl 1.73610 * 124.50221 * 179.73184 * 22 21 20 24 24 S 1.70605 * 110.99352 * 0.02562 * 22 21 20 25 25 C 1.46926 * 118.73905 * 53.30371 * 14 13 12 26 26 H 0.97000 * 120.00665 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.45543 * 298.70382 * 11 9 7 28 28 H 1.08995 * 109.46578 * 58.66208 * 11 9 7 29 29 H 1.09003 * 109.49919 * 181.31194 * 12 11 9 30 30 H 1.09000 * 109.49927 * 301.37878 * 12 11 9 31 31 H 1.08994 * 109.51302 * 185.70720 * 13 12 11 32 32 H 1.08997 * 109.43039 * 65.41947 * 13 12 11 33 33 H 1.07998 * 123.38053 * 0.06139 * 20 19 17 34 34 H 1.08000 * 122.43312 * 179.97438 * 21 20 19 35 35 H 1.09002 * 109.58433 * 66.43767 * 25 14 13 36 36 H 1.09003 * 109.58504 * 186.71511 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5582 0.8908 11 6 2.2451 -3.6628 -0.0028 12 6 1.4812 -4.9885 0.0303 13 6 0.6028 -5.0989 -1.2147 14 7 -0.2554 -3.9095 -1.3017 15 6 -1.5921 -4.0345 -1.4207 16 8 -2.2823 -3.0483 -1.5785 17 6 -2.2230 -5.3837 -1.3586 18 8 -2.3000 -6.0659 -2.3627 19 6 -2.7313 -5.8699 -0.1336 20 6 -3.3341 -7.0933 0.0518 21 6 -3.7343 -7.3080 1.3428 22 6 -3.4744 -6.3014 2.1965 23 17 -3.8821 -6.3131 3.8840 24 16 -2.6980 -5.0086 1.3988 25 6 0.3707 -2.5813 -1.2503 26 1 -0.4851 0.8400 -0.0004 27 1 2.8544 -3.6172 -0.9055 28 1 2.8891 -3.5929 0.8737 29 1 2.1899 -5.8164 0.0514 30 1 0.8532 -5.0244 0.9205 31 1 -0.0172 -5.9925 -1.1447 32 1 1.2352 -5.1587 -2.1004 33 1 -3.4764 -7.8119 -0.7418 34 1 -4.2241 -8.2191 1.6535 35 1 0.9837 -2.4317 -2.1391 36 1 -0.4026 -1.8143 -1.2065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617293966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:37 Heat of formation + Delta-G solvation = -40.613949 kcal Electronic energy + Delta-G solvation = -23385.021611 eV Core-core repulsion = 19794.079909 eV Total energy + Delta-G solvation = -3590.941703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53210 -38.74130 -37.79281 -36.85142 -36.70044 -33.47831 -31.92927 -30.54653 -29.88934 -26.81201 -25.18059 -24.91886 -23.03245 -21.95104 -20.35602 -19.67681 -19.07521 -17.76561 -16.93397 -16.36805 -16.19563 -15.89166 -15.01783 -14.70717 -14.40871 -14.17327 -13.87508 -13.78475 -13.61102 -13.58814 -12.92674 -12.87402 -12.72173 -12.23635 -12.06350 -11.76423 -11.63707 -11.18603 -11.08943 -10.96789 -10.94639 -10.59437 -10.48094 -10.32281 -10.01666 -9.35249 -9.22701 -9.00279 -8.94021 -8.91840 -8.51187 -7.98561 -6.07172 -4.15660 -0.16366 0.78081 1.49540 1.70712 1.85051 2.55262 2.73279 3.20765 3.29748 3.35361 3.36411 4.20918 4.38532 4.77639 4.90429 4.99748 5.14851 5.23789 5.36831 5.45785 5.56506 5.72049 5.86026 5.89875 6.05245 6.20934 6.48146 6.53837 6.73394 6.86084 6.96531 7.05582 7.07540 7.49679 7.74562 7.84908 7.99670 8.25517 8.42311 8.87920 9.50578 10.98572 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.004122 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.228349 B = 6791.520535 C = 7534.318447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.105 3.895 14 N -0.585 5.585 15 C 0.475 3.525 16 O -0.506 6.506 17 C 0.427 3.573 18 O -0.426 6.426 19 C -0.309 4.309 20 C -0.032 4.032 21 C -0.147 4.147 22 C -0.171 4.171 23 Cl -0.005 7.005 24 S 0.338 5.662 25 C 0.109 3.891 26 H 0.265 0.735 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.050 0.950 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 -15.624 4.489 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.049 0.951 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.018 4.018 14 N -0.318 5.318 15 C 0.258 3.742 16 O -0.382 6.382 17 C 0.301 3.699 18 O -0.301 6.301 19 C -0.429 4.429 20 C -0.066 4.066 21 C -0.180 4.180 22 C -0.318 4.318 23 Cl 0.024 6.976 24 S 0.608 5.392 25 C -0.011 4.011 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.068 0.932 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.233 -13.857 4.512 15.484 hybrid contribution -0.177 -0.618 -0.184 0.669 sum -5.410 -14.476 4.328 16.048 Atomic orbital electron populations 1.69840 1.05777 1.27165 1.49142 1.25038 0.94890 0.99303 0.94653 0.86634 0.79586 0.83042 0.78626 1.20217 1.21227 1.20242 1.21020 0.92949 0.89942 1.52094 0.92248 1.18980 0.92607 0.92527 0.93691 0.95058 1.21644 0.98598 0.93725 1.00950 1.21896 0.98685 0.99587 0.97082 1.21665 0.93750 0.86875 0.99557 1.48636 1.04406 1.09955 1.68825 1.20534 0.84065 0.89839 0.79743 1.90848 1.61833 1.37229 1.48307 1.20064 0.76587 0.86503 0.86784 1.90681 1.47844 1.55832 1.35738 1.24144 1.16368 1.02180 1.00223 1.20816 0.93841 0.95051 0.96916 1.20019 1.05270 1.00623 0.92075 1.25601 1.10108 1.03556 0.92510 1.98393 1.91914 1.98205 1.09112 1.84221 1.48167 1.11403 0.95437 1.22520 0.98916 0.80340 0.99292 0.92453 0.92932 0.92638 0.91703 0.91962 0.91734 0.90943 0.81995 0.82749 0.93211 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 11.39 55.43 0.63 -23.95 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.45 8.56 -34.44 -0.29 -13.74 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.07 5.11 -26.69 -0.14 -2.20 16 12 C -0.13 -2.03 6.06 -26.83 -0.16 -2.19 16 13 C 0.10 1.64 6.33 -3.93 -0.02 1.62 16 14 N -0.58 -11.52 2.98 -173.69 -0.52 -12.03 16 15 C 0.48 9.68 6.80 -11.76 -0.08 9.60 16 16 O -0.51 -12.15 16.53 5.45 0.09 -12.06 16 17 C 0.43 7.29 4.71 -33.94 -0.16 7.13 16 18 O -0.43 -7.57 17.47 5.24 0.09 -7.47 16 19 C -0.31 -4.39 6.24 -38.66 -0.24 -4.63 16 20 C -0.03 -0.36 9.96 -40.30 -0.40 -0.76 16 21 C -0.15 -1.44 10.08 -41.39 -0.42 -1.86 16 22 C -0.17 -1.90 6.83 29.42 0.20 -1.70 16 23 Cl 0.00 -0.05 29.27 -51.86 -1.52 -1.57 16 24 S 0.34 4.64 22.41 -107.50 -2.41 2.23 16 25 C 0.11 2.51 5.39 -3.72 -0.02 2.49 16 26 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.90 6.30 -51.93 -0.33 0.58 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.16 1.50 8.03 -52.49 -0.42 1.07 16 34 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.13 3.37 5.16 -51.93 -0.27 3.10 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -29.49 335.11 -9.58 -39.07 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.94 Total: -0.95 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.04 Total: -3.89 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.11 Total: -35.98 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.53 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.41 Total: 2.23 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.52 Total: -1.57 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.49 -9.58 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.541 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds