Wall clock time and date at job start Tue Mar 31 2020 14:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35528 * 116.99975 * 2 1 4 4 N 1.32747 * 120.47082 * 0.23310 * 3 2 1 5 5 C 1.32461 * 120.65712 * 180.27911 * 4 3 2 6 6 N 1.38444 * 119.17629 * 179.76153 * 5 4 3 7 7 C 1.46502 * 119.99635 * 179.72597 * 6 5 4 8 8 C 1.52999 * 109.47087 * 186.35262 * 7 6 5 9 9 C 1.50700 * 115.55966 * 40.02536 * 8 7 6 10 10 H 1.08004 * 120.00176 * 260.47270 * 9 8 7 11 11 C 1.37877 * 120.00254 * 80.47166 * 9 8 7 12 12 N 1.31518 * 119.99919 * 354.32912 * 11 9 8 13 13 Si 1.86797 * 120.00057 * 174.32474 * 11 9 8 14 14 H 1.48495 * 109.47391 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47046 * 120.00099 * 13 11 9 16 16 H 1.48500 * 109.47377 * 240.00051 * 13 11 9 17 17 C 1.52996 * 117.49969 * 185.71022 * 8 7 6 18 18 C 1.53006 * 60.03221 * 107.47937 * 17 8 7 19 19 N 1.32468 * 121.64133 * 359.48065 * 5 4 3 20 20 C 1.32447 * 120.89605 * 0.25544 * 19 5 4 21 21 C 1.38300 * 119.25199 * 0.02562 * 20 19 5 22 22 Br 1.89102 * 120.75060 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.46566 * 299.99734 * 1 2 3 24 24 H 1.08998 * 109.47431 * 59.99584 * 1 2 3 25 25 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 26 26 H 0.96996 * 120.00509 * 359.72543 * 6 5 4 27 27 H 1.08996 * 109.46915 * 66.35579 * 7 6 5 28 28 H 1.09003 * 109.47213 * 306.35352 * 7 6 5 29 29 H 0.96995 * 119.99857 * 185.02506 * 12 11 9 30 30 H 1.08996 * 117.49725 * 214.97905 * 17 8 7 31 31 H 1.09004 * 117.49818 * 359.97438 * 17 8 7 32 32 H 1.08994 * 117.49627 * 107.49887 * 18 17 8 33 33 H 1.08997 * 117.49957 * 252.52555 * 18 17 8 34 34 H 1.07996 * 120.37358 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 7 1.3305 2.3268 0.0047 5 6 1.9279 3.5090 -0.0009 6 7 1.1535 4.6566 -0.0008 7 6 1.7956 5.9734 -0.0008 8 6 0.7305 7.0601 0.1589 9 6 -0.3753 6.7484 1.1341 10 1 -1.3288 6.3915 0.7735 11 6 -0.1699 6.9187 2.4868 12 7 1.0227 7.2454 2.9348 13 14 -1.5854 6.6855 3.6832 14 1 -2.8138 6.3226 2.9319 15 1 -1.2516 5.5995 4.6394 16 1 -1.8161 7.9486 4.4294 17 6 1.1853 8.5167 0.0486 18 6 0.3694 7.8832 -1.0802 19 7 3.2479 3.6205 -0.0009 20 6 4.0213 2.5452 -0.0005 21 6 3.4363 1.2921 -0.0005 22 35 4.4999 -0.2715 -0.0006 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.1859 4.5888 -0.0008 27 1 2.3252 6.1193 -0.9422 28 1 2.5024 6.0330 0.8268 29 1 1.1855 7.2939 3.8898 30 1 0.6847 9.2495 0.6813 31 1 2.2435 8.7009 -0.1373 32 1 -0.6679 8.1993 -1.1899 33 1 0.8908 7.6502 -2.0085 34 1 5.0965 2.6460 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619527700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:14 Heat of formation + Delta-G solvation = 31.900591 kcal Electronic energy + Delta-G solvation = -19697.576661 eV Core-core repulsion = 16484.891619 eV Total energy + Delta-G solvation = -3212.685042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18088 -39.73710 -38.73533 -36.02945 -34.23241 -34.02300 -33.04892 -30.20808 -28.48509 -27.74456 -27.04597 -24.85944 -23.69962 -22.88667 -21.24215 -19.65178 -19.44012 -17.92302 -17.37749 -17.23919 -16.67053 -16.12837 -16.08794 -15.82583 -15.56177 -14.94036 -14.74675 -14.54798 -14.11300 -13.49132 -13.00984 -12.94031 -12.92799 -12.72127 -12.45230 -12.35893 -12.02989 -11.97341 -11.45533 -11.40213 -11.28717 -10.88052 -10.51217 -10.44979 -10.27288 -9.94735 -8.89992 -8.12814 -6.24841 -0.00906 0.17507 0.65125 1.36560 1.41932 1.49580 1.70283 2.09577 2.39627 2.74282 3.10460 3.19002 3.46007 3.71497 3.83843 4.10969 4.27424 4.38034 4.42221 4.54231 4.67348 4.72267 4.75539 4.86647 5.02792 5.12681 5.29261 5.50435 5.63922 5.69198 5.75745 5.90842 6.11544 6.37529 6.54133 6.82301 7.30003 7.44951 8.94239 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003661 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.759422 B = 7646.574424 C = 8194.145005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.294 6.294 3 C 0.420 3.580 4 N -0.634 5.634 5 C 0.596 3.404 6 N -0.652 5.652 7 C 0.196 3.804 8 C 0.000 4.000 9 C -0.503 4.503 10 H 0.058 0.942 11 C 0.036 3.964 12 N -0.899 5.899 13 Si 0.940 3.060 14 H -0.264 1.264 15 H -0.290 1.290 16 H -0.284 1.284 17 C -0.158 4.158 18 C -0.182 4.182 19 N -0.598 5.598 20 C 0.252 3.748 21 C -0.302 4.302 22 Br -0.009 7.009 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.135 0.865 26 H 0.417 0.583 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.258 0.742 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.342 -14.936 -7.134 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.197 6.197 3 C 0.228 3.772 4 N -0.376 5.376 5 C 0.238 3.762 6 N -0.283 5.283 7 C 0.072 3.928 8 C -0.001 4.001 9 C -0.541 4.541 10 H 0.076 0.924 11 C -0.166 4.166 12 N -0.536 5.536 13 Si 0.766 3.234 14 H -0.188 1.188 15 H -0.217 1.217 16 H -0.210 1.210 17 C -0.196 4.196 18 C -0.219 4.219 19 N -0.326 5.326 20 C 0.084 3.916 21 C -0.392 4.392 22 Br 0.074 6.926 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.153 0.847 26 H 0.255 0.745 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.334 -14.618 -6.968 17.050 hybrid contribution -1.102 -0.121 1.100 1.562 sum 4.232 -14.739 -5.868 16.419 Atomic orbital electron populations 1.23198 0.75135 1.05297 1.02526 1.86313 1.24838 1.22512 1.85997 1.19555 0.88351 0.84812 0.84434 1.67546 1.40748 0.97723 1.31538 1.19275 0.85939 0.85365 0.85585 1.44511 1.08846 1.01825 1.73077 1.20623 0.93964 0.79677 0.98545 1.19161 0.96125 0.89269 0.95567 1.20575 0.97828 1.45140 0.90574 0.92403 1.25549 0.97038 0.94228 0.99783 1.70072 1.22038 1.47690 1.13824 0.85792 0.80879 0.77253 0.79431 1.18817 1.21678 1.20956 1.22471 0.97934 0.97827 1.01388 1.23086 0.99816 1.06478 0.92532 1.68214 1.04059 1.33696 1.26588 1.23358 1.01355 0.83834 0.83102 1.22210 0.92169 0.96262 1.28522 1.96587 1.66138 1.31534 1.98356 0.92798 0.92081 0.84740 0.74464 0.93073 0.93702 0.93283 0.91964 0.90440 0.90071 0.88975 0.77469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.41 113.37 1.18 1.88 16 2 O -0.29 -8.08 9.93 -88.31 -0.88 -8.96 16 3 C 0.42 13.43 7.52 84.85 0.64 14.07 16 4 N -0.63 -22.87 9.40 -310.80 -2.92 -25.79 16 5 C 0.60 23.16 8.43 261.49 2.20 25.36 16 6 N -0.65 -26.68 5.42 -351.05 -1.90 -28.59 16 7 C 0.20 8.40 5.74 86.38 0.50 8.90 16 8 C 0.00 -0.02 1.63 -52.90 -0.09 -0.11 16 9 C -0.50 -25.09 7.51 25.60 0.19 -24.90 16 10 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 11 C 0.04 1.86 5.42 84.65 0.46 2.31 16 12 N -0.90 -49.38 13.11 21.45 0.28 -49.10 16 13 Si 0.94 41.99 29.54 68.60 2.03 44.02 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 C -0.16 -6.82 9.71 30.60 0.30 -6.53 16 18 C -0.18 -7.02 9.89 30.62 0.30 -6.72 16 19 N -0.60 -21.76 9.55 -198.12 -1.89 -23.65 16 20 C 0.25 7.31 11.07 84.61 0.94 8.25 16 21 C -0.30 -8.74 6.28 22.58 0.14 -8.60 16 22 Br -0.01 -0.20 33.30 -20.37 -0.68 -0.87 16 23 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 24 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 25 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.42 17.19 7.71 -92.71 -0.71 16.47 16 27 H 0.05 2.02 7.95 -2.39 -0.02 2.00 16 28 H 0.04 2.20 8.10 -2.39 -0.02 2.18 16 29 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 30 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.09 3.10 8.09 -2.39 -0.02 3.08 16 34 H 0.21 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -57.84 320.00 1.21 -56.63 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.41 Total: 22.39 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.76 Total: 13.93 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -6.44 Total: -127.13 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.88 Total: -8.96 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.68 Total: -0.87 kcal Total: -57.84 1.21 -56.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.526 kcal (2) G-P(sol) polarization free energy of solvation -57.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds