Wall clock time and date at job start Tue Mar 31 2020 15:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86801 * 120.00004 * 2 1 4 4 H 1.48502 * 109.46672 * 269.99603 * 3 2 1 5 5 H 1.48496 * 109.47190 * 29.99458 * 3 2 1 6 6 H 1.48500 * 109.46859 * 149.99842 * 3 2 1 7 7 C 1.38750 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99834 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00381 * 0.02562 * 7 2 1 10 10 C 1.34308 * 117.00061 * 179.97438 * 9 7 2 11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 S 1.65599 * 120.00012 * 164.99696 * 13 12 10 15 15 O 1.42097 * 106.40866 * 178.54114 * 14 13 12 16 16 O 1.42102 * 106.40573 * 311.46330 * 14 13 12 17 17 C 1.76207 * 107.21714 * 65.00092 * 14 13 12 18 18 C 1.38261 * 119.97766 * 269.72645 * 17 14 13 19 19 C 1.38297 * 120.03760 * 179.78804 * 18 17 14 20 20 C 1.37968 * 119.92042 * 0.46962 * 19 18 17 21 21 C 1.38608 * 120.03768 * 359.78091 * 20 19 18 22 22 C 1.37963 * 120.03765 * 359.97438 * 21 20 19 23 23 C 1.51083 * 107.26944 * 179.97438 * 21 20 19 24 24 O 1.43945 * 105.95905 * 17.68900 * 23 21 20 25 25 C 1.43939 * 104.94867 * 331.55739 * 24 23 21 26 26 H 0.97000 * 119.99943 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99738 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99825 * 12 10 9 29 29 H 0.97001 * 120.00191 * 345.00496 * 13 12 10 30 30 H 1.07997 * 119.98402 * 359.97438 * 18 17 14 31 31 H 1.07998 * 120.04370 * 180.25304 * 19 18 17 32 32 H 1.08002 * 120.03995 * 180.02562 * 22 21 20 33 33 H 1.08997 * 110.15242 * 136.81365 * 23 21 20 34 34 H 1.09007 * 110.15185 * 258.56413 * 23 21 20 35 35 H 1.08996 * 110.15747 * 147.57162 * 25 24 23 36 36 H 1.09003 * 110.15624 * 269.25327 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4459 2.6527 0.6999 6 1 3.5460 1.4401 0.7001 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4965 0.0005 11 8 3.2754 -3.4331 0.0001 12 6 1.3808 -4.8393 0.0011 13 7 2.3898 -5.9014 0.0004 14 16 1.9560 -7.4558 0.3720 15 8 3.1341 -8.2411 0.2512 16 8 1.1890 -7.3838 1.5661 17 6 0.8587 -8.0073 -0.8915 18 6 -0.5040 -7.8179 -0.7542 19 6 -1.3660 -8.2463 -1.7472 20 6 -0.8653 -8.8717 -2.8705 21 6 0.5004 -9.0663 -3.0056 22 6 1.3606 -8.6343 -2.0174 23 6 0.7251 -9.7681 -4.3245 24 8 -0.4816 -9.5762 -5.0856 25 6 -1.5245 -9.4476 -4.1019 26 1 -0.4850 0.8401 -0.0004 27 1 0.7584 -4.9295 0.8914 28 1 0.7577 -4.9300 -0.8886 29 1 3.3120 -5.6942 -0.2177 30 1 -0.8953 -7.3323 0.1275 31 1 -2.4301 -8.0947 -1.6419 32 1 2.4248 -8.7855 -2.1228 33 1 1.5728 -9.3244 -4.8464 34 1 0.8998 -10.8313 -4.1592 35 1 -2.3003 -8.7725 -4.4631 36 1 -1.9522 -10.4248 -3.8779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726671870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:57 Heat of formation + Delta-G solvation = -154.550327 kcal Electronic energy + Delta-G solvation = -24938.089726 eV Core-core repulsion = 20901.498207 eV Total energy + Delta-G solvation = -4036.591519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07245 -39.19154 -37.81538 -37.31966 -35.93690 -35.85381 -34.19320 -32.24968 -32.12781 -31.87466 -28.37514 -27.58963 -25.46543 -24.98596 -22.48811 -22.22231 -20.51591 -19.59654 -18.17267 -17.83696 -17.67120 -16.99281 -16.80299 -16.43594 -16.12406 -15.97307 -15.30138 -15.05595 -14.79736 -14.45529 -14.42644 -14.02969 -13.85648 -13.49998 -13.18768 -13.08070 -12.86208 -12.41237 -12.32563 -12.15544 -12.10263 -12.07457 -11.61082 -11.53323 -11.26874 -11.09364 -10.62282 -10.54689 -10.47925 -9.94039 -9.64639 -9.50159 -9.22962 -9.16781 -8.67310 -6.50621 -4.19161 0.16485 0.44798 0.85125 2.75607 3.02874 3.07543 3.15505 3.21028 3.36492 3.45792 3.63366 3.72849 3.84547 4.03186 4.32564 4.43209 4.48907 4.77916 4.86940 4.87226 4.94832 5.02533 5.06585 5.20797 5.26966 5.32609 5.50379 5.57770 5.64521 5.66763 5.70824 5.79724 6.18484 6.37720 6.58139 7.04636 7.30480 7.83575 8.54942 8.97752 9.68682 10.66719 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.003115 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.679016 B = 8986.570812 C = 9947.980689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.044 3.956 3 Si 0.946 3.054 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.384 4.384 8 H 0.098 0.902 9 O -0.208 6.208 10 C 0.394 3.606 11 O -0.549 6.549 12 C 0.134 3.866 13 N -1.102 6.102 14 S 2.705 3.295 15 O -0.955 6.955 16 O -0.952 6.952 17 C -0.673 4.673 18 C -0.011 4.011 19 C -0.113 4.113 20 C -0.079 4.079 21 C -0.157 4.157 22 C 0.009 3.991 23 C 0.092 3.908 24 O -0.358 6.358 25 C 0.084 3.916 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.429 0.571 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -18.709 -6.237 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.161 4.161 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.460 4.460 8 H 0.116 0.884 9 O -0.114 6.114 10 C 0.239 3.761 11 O -0.447 6.447 12 C 0.006 3.994 13 N -0.867 5.867 14 S 2.793 3.207 15 O -0.946 6.946 16 O -0.941 6.941 17 C -0.759 4.759 18 C -0.030 4.030 19 C -0.132 4.132 20 C -0.079 4.079 21 C -0.158 4.158 22 C -0.011 4.011 23 C 0.015 3.985 24 O -0.276 6.276 25 C 0.008 3.992 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.268 0.732 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.944 -19.003 -5.723 20.234 hybrid contribution 0.309 0.957 -0.547 1.145 sum -3.635 -18.046 -6.270 19.447 Atomic orbital electron populations 1.69986 1.06024 1.27931 1.45846 1.25364 0.95862 0.98935 0.95936 0.85640 0.79071 0.79515 0.78780 1.19827 1.20244 1.19021 1.21260 0.92485 0.79510 1.52793 0.88433 1.83845 1.39209 1.13270 1.75057 1.22744 0.86768 0.87055 0.79568 1.90550 1.15469 1.87460 1.51194 1.20429 0.89777 0.84629 1.04554 1.55241 1.19515 1.23477 1.88466 1.01624 0.73337 0.71977 0.73803 1.93594 1.46440 1.67640 1.86897 1.93603 1.72459 1.86013 1.42071 1.31126 1.10622 1.16326 1.17816 1.21058 0.91043 0.93026 0.97910 1.20557 1.00748 0.99148 0.92723 1.21418 0.95250 0.95190 0.96082 1.21136 0.94680 1.01921 0.98054 1.20098 1.00147 0.91149 0.89661 1.21791 0.89256 0.99510 0.87912 1.89119 1.16417 1.94079 1.28026 1.21896 0.91314 1.00827 0.85152 0.91899 0.87143 0.88734 0.73208 0.83082 0.84341 0.83742 0.87919 0.90093 0.87696 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.67 55.48 0.76 -23.63 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.95 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.38 -10.97 9.65 30.92 0.30 -10.68 16 8 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 9 O -0.21 -5.65 9.75 -20.70 -0.20 -5.85 16 10 C 0.39 9.07 7.97 36.01 0.29 9.36 16 11 O -0.55 -13.77 14.97 -19.05 -0.29 -14.06 16 12 C 0.13 2.20 6.81 -5.19 -0.04 2.16 16 13 N -1.10 -16.22 5.93 -11.65 -0.07 -16.28 16 14 S 2.70 36.17 5.74 -107.50 -0.62 35.55 16 15 O -0.96 -14.44 17.28 -57.17 -0.99 -15.43 16 16 O -0.95 -14.76 16.74 -57.17 -0.96 -15.72 16 17 C -0.67 -7.78 5.95 -39.55 -0.24 -8.01 16 18 C -0.01 -0.12 9.52 -39.55 -0.38 -0.49 16 19 C -0.11 -1.04 10.04 -39.66 -0.40 -1.44 16 20 C -0.08 -0.75 6.32 -104.40 -0.66 -1.41 16 21 C -0.16 -1.59 6.32 -104.40 -0.66 -2.25 16 22 C 0.01 0.09 9.52 -39.66 -0.38 -0.28 16 23 C 0.09 0.77 7.63 36.19 0.28 1.04 16 24 O -0.36 -3.51 11.72 -35.23 -0.41 -3.93 16 25 C 0.08 0.65 7.63 36.19 0.28 0.93 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.11 1.65 7.75 -51.93 -0.40 1.24 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.43 6.47 7.70 -34.47 -0.27 6.20 16 30 H 0.15 1.37 7.61 -52.49 -0.40 0.97 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.14 1.35 7.62 -52.49 -0.40 0.95 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -36.25 334.15 -7.96 -44.21 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.50 Total: 4.39 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.70 Total: -9.97 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.69 Total: -39.91 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -2.85 Total: -54.99 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 36.17 SS G_CDS: -0.62 Total: 35.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.25 -7.96 -44.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726671870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.335 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds