Wall clock time and date at job start Tue Mar 31 2020 14:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48497 * 109.46941 * 270.00029 * 3 2 1 5 5 H 1.48504 * 109.46837 * 29.99602 * 3 2 1 6 6 H 1.48500 * 109.47195 * 149.99325 * 3 2 1 7 7 C 1.38884 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00302 * 0.02562 * 7 2 1 9 9 O 1.34793 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.34773 * 116.99714 * 180.02562 * 9 7 2 11 11 O 1.21550 * 120.00075 * 359.97438 * 10 9 7 12 12 C 1.47268 * 119.99803 * 180.02562 * 10 9 7 13 13 C 1.36784 * 126.84406 * 179.97438 * 12 10 9 14 14 C 1.42133 * 103.78390 * 180.02562 * 13 12 10 15 15 C 1.48454 * 126.83577 * 180.02562 * 14 13 12 16 16 C 1.39316 * 120.11541 * 359.72706 * 15 14 13 17 17 C 1.38023 * 119.87535 * 179.72261 * 16 15 14 18 18 C 1.38311 * 120.12221 * 0.57337 * 17 16 15 19 19 C 1.50700 * 119.88422 * 179.70282 * 18 17 16 20 20 F 1.39900 * 109.47163 * 269.97639 * 19 18 17 21 21 F 1.39897 * 109.47321 * 29.97176 * 19 18 17 22 22 F 1.39898 * 109.47435 * 149.97611 * 19 18 17 23 23 C 1.38321 * 120.24044 * 359.67682 * 18 17 16 24 24 C 1.38034 * 120.11666 * 0.04543 * 23 18 17 25 25 N 1.30964 * 106.33495 * 359.97438 * 14 13 12 26 26 O 1.20867 * 111.83467 * 359.97438 * 25 14 13 27 27 H 0.96995 * 120.00353 * 0.02562 * 1 2 3 28 28 H 1.07999 * 128.11242 * 359.97438 * 13 12 10 29 29 H 1.08001 * 120.06110 * 359.97215 * 16 15 14 30 30 H 1.08009 * 119.93752 * 180.27215 * 17 16 15 31 31 H 1.07998 * 119.94369 * 180.02562 * 23 18 17 32 32 H 1.07999 * 120.05803 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5451 1.4403 0.7002 7 6 2.0081 -1.2027 0.0005 8 1 1.4682 -2.1381 0.0005 9 8 3.3560 -1.2026 0.0011 10 6 3.9679 -2.4035 0.0010 11 8 3.3060 -3.4229 0.0010 12 6 5.4386 -2.4804 0.0022 13 6 6.2005 -3.6165 0.0028 14 6 7.5355 -3.1289 0.0044 15 6 8.7791 -3.9396 0.0051 16 6 8.7066 -5.3309 0.0098 17 6 9.8659 -6.0798 0.0047 18 6 11.0981 -5.4515 0.0067 19 6 12.3606 -6.2745 0.0078 20 9 12.7498 -6.5297 1.3272 21 9 12.1282 -7.4859 -0.6522 22 9 13.3758 -5.5721 -0.6503 23 6 11.1760 -4.0705 0.0073 24 6 10.0228 -3.3118 0.0067 25 7 7.4504 -1.8220 0.0040 26 8 6.3015 -1.4464 0.0020 27 1 -0.4850 0.8400 -0.0004 28 1 5.8660 -4.6434 0.0029 29 1 7.7449 -5.8224 0.0135 30 1 9.8108 -7.1585 0.0039 31 1 12.1406 -3.5850 0.0085 32 1 10.0847 -2.2336 0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730859310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:53 Heat of formation + Delta-G solvation = -135.235549 kcal Electronic energy + Delta-G solvation = -25690.949213 eV Core-core repulsion = 20977.894554 eV Total energy + Delta-G solvation = -4713.054659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.52291 -48.04033 -47.98050 -44.88623 -39.79383 -39.36208 -35.82875 -34.80011 -32.65889 -32.18331 -31.63638 -31.33331 -26.73039 -26.34897 -24.11011 -23.60417 -22.79041 -22.04944 -20.18517 -18.91699 -18.83500 -18.69327 -18.36726 -18.18089 -17.65637 -16.40124 -15.94663 -15.55603 -15.12291 -15.01307 -14.88637 -14.82696 -14.68371 -14.44954 -14.26344 -14.19947 -14.13890 -13.92923 -13.56302 -13.53981 -13.16128 -12.64974 -12.44892 -11.95179 -11.89237 -11.59162 -11.42878 -11.16118 -10.75435 -10.57835 -9.97350 -9.74106 -9.65192 -9.55121 -9.10357 -8.93272 -6.66260 -4.36839 0.13431 0.81581 0.96544 2.05144 2.26917 2.79922 3.07644 3.14692 3.20338 3.28398 3.30743 3.45135 3.58999 3.63091 3.80305 4.04670 4.06439 4.31398 4.38318 4.63358 4.77845 4.87928 4.93600 5.01421 5.14694 5.23984 5.46146 5.61117 5.69560 5.85692 5.97916 6.03642 6.22732 7.35203 7.72304 8.00484 8.28095 8.68046 9.30981 10.39282 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.037557 B = 0.002207 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.349188 B =12682.435963 C =13253.300835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.373 4.373 8 H 0.118 0.882 9 O -0.221 6.221 10 C 0.469 3.531 11 O -0.512 6.512 12 C -0.008 4.008 13 C -0.165 4.165 14 C 0.036 3.964 15 C 0.025 3.975 16 C -0.097 4.097 17 C -0.067 4.067 18 C -0.182 4.182 19 C 0.509 3.491 20 F -0.176 7.176 21 F -0.176 7.176 22 F -0.177 7.177 23 C -0.068 4.068 24 C -0.096 4.096 25 N -0.342 5.342 26 O 0.134 5.866 27 H 0.286 0.714 28 H 0.186 0.814 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.002 -9.436 0.040 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.448 4.448 8 H 0.135 0.865 9 O -0.127 6.127 10 C 0.314 3.686 11 O -0.408 6.408 12 C -0.072 4.072 13 C -0.187 4.187 14 C -0.119 4.119 15 C 0.024 3.976 16 C -0.116 4.116 17 C -0.085 4.085 18 C -0.184 4.184 19 C 0.455 3.545 20 F -0.157 7.157 21 F -0.158 7.158 22 F -0.158 7.158 23 C -0.086 4.086 24 C -0.115 4.115 25 N -0.040 5.040 26 O 0.058 5.942 27 H 0.097 0.903 28 H 0.203 0.797 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.549 -8.580 0.046 25.064 hybrid contribution -0.023 -0.127 -0.018 0.130 sum 23.527 -8.707 0.028 25.086 Atomic orbital electron populations 1.69550 1.05921 1.29345 1.43808 1.24643 0.95076 0.99179 0.94765 0.86211 0.80658 0.80782 0.79569 1.19307 1.20266 1.17676 1.20840 0.75438 0.97491 1.51029 0.86469 1.83557 1.24519 1.30280 1.74375 1.18402 0.83422 0.83595 0.83139 1.90785 1.63030 1.35776 1.51222 1.23375 0.91505 0.86842 1.05444 1.22663 0.89710 1.00695 1.05648 1.21749 0.93873 0.90030 1.06268 1.17892 0.89623 0.92159 0.97906 1.21183 0.99209 0.92069 0.99135 1.20861 0.90415 1.00883 0.96370 1.20066 0.92501 0.94782 1.11010 1.18282 0.84214 0.78127 0.73842 1.93237 1.92123 1.94410 1.35973 1.93197 1.94495 1.46978 1.81108 1.93195 1.62814 1.78615 1.81207 1.20877 0.99699 0.91632 0.96434 1.21241 0.90465 1.01094 0.98669 1.74001 0.99292 1.13823 1.16885 1.85052 1.10076 1.33149 1.65930 0.90295 0.79713 0.83790 0.83975 0.84158 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.37 13.95 55.49 0.77 -22.59 16 2 C 0.07 1.90 5.50 -17.51 -0.10 1.80 16 3 Si 0.90 20.14 28.62 -169.99 -4.86 15.28 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.25 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.37 -10.36 10.11 30.97 0.31 -10.05 16 8 H 0.12 3.53 7.09 -52.49 -0.37 3.16 16 9 O -0.22 -5.57 8.58 -22.39 -0.19 -5.76 16 10 C 0.47 10.62 7.89 34.40 0.27 10.89 16 11 O -0.51 -12.65 16.16 -19.31 -0.31 -12.96 16 12 C -0.01 -0.14 7.35 -36.44 -0.27 -0.41 16 13 C -0.17 -2.43 10.30 -38.61 -0.40 -2.83 16 14 C 0.04 0.49 7.05 -82.53 -0.58 -0.09 16 15 C 0.03 0.28 5.88 -104.89 -0.62 -0.34 16 16 C -0.10 -0.86 9.60 -39.26 -0.38 -1.24 16 17 C -0.07 -0.54 9.38 -39.63 -0.37 -0.91 16 18 C -0.18 -1.56 5.46 -104.56 -0.57 -2.13 16 19 C 0.51 4.36 3.36 36.01 0.12 4.48 16 20 F -0.18 -1.61 17.30 2.25 0.04 -1.57 16 21 F -0.18 -1.54 16.45 2.25 0.04 -1.50 16 22 F -0.18 -1.56 16.45 2.25 0.04 -1.52 16 23 C -0.07 -0.58 9.38 -39.63 -0.37 -0.95 16 24 C -0.10 -0.94 9.70 -39.26 -0.38 -1.32 16 25 N -0.34 -5.41 11.78 33.40 0.39 -5.02 16 26 O 0.13 2.38 11.21 15.43 0.17 2.55 16 27 H 0.29 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.19 2.24 7.57 -52.49 -0.40 1.84 16 29 H 0.14 1.03 7.22 -52.49 -0.38 0.65 16 30 H 0.14 0.85 7.59 -52.48 -0.40 0.45 16 31 H 0.14 0.92 7.59 -52.49 -0.40 0.52 16 32 H 0.14 1.35 7.89 -52.49 -0.41 0.94 16 LS Contribution 316.06 15.07 4.76 4.76 Total: -1.00 -29.25 316.06 -3.97 -33.23 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -1.49 Total: -1.80 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.33 Total: -3.09 kcal Atomic # 7 Polarization: -28.78 SS G_CDS: 1.17 Total: -27.61 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.33 Total: -16.17 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.11 Total: -4.60 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.86 Total: 15.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.25 -3.97 -33.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730859310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.011 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds