Wall clock time and date at job start Tue Mar 31 2020 14:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48497 * 109.46941 * 270.00029 * 3 2 1 5 5 H 1.48504 * 109.46837 * 29.99602 * 3 2 1 6 6 H 1.48500 * 109.47195 * 149.99325 * 3 2 1 7 7 C 1.38884 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00302 * 0.02562 * 7 2 1 9 9 O 1.34793 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.34773 * 116.99714 * 180.02562 * 9 7 2 11 11 O 1.21550 * 120.00075 * 359.97438 * 10 9 7 12 12 C 1.47268 * 119.99803 * 180.02562 * 10 9 7 13 13 C 1.36784 * 126.84406 * 179.97438 * 12 10 9 14 14 C 1.42133 * 103.78390 * 180.02562 * 13 12 10 15 15 C 1.48454 * 126.83577 * 180.02562 * 14 13 12 16 16 C 1.39316 * 120.11541 * 359.72706 * 15 14 13 17 17 C 1.38023 * 119.87535 * 179.72261 * 16 15 14 18 18 C 1.38311 * 120.12221 * 0.57337 * 17 16 15 19 19 C 1.50700 * 119.88422 * 179.70282 * 18 17 16 20 20 F 1.39900 * 109.47163 * 269.97639 * 19 18 17 21 21 F 1.39897 * 109.47321 * 29.97176 * 19 18 17 22 22 F 1.39898 * 109.47435 * 149.97611 * 19 18 17 23 23 C 1.38321 * 120.24044 * 359.67682 * 18 17 16 24 24 C 1.38034 * 120.11666 * 0.04543 * 23 18 17 25 25 N 1.30964 * 106.33495 * 359.97438 * 14 13 12 26 26 O 1.20867 * 111.83467 * 359.97438 * 25 14 13 27 27 H 0.96995 * 120.00353 * 0.02562 * 1 2 3 28 28 H 1.07999 * 128.11242 * 359.97438 * 13 12 10 29 29 H 1.08001 * 120.06110 * 359.97215 * 16 15 14 30 30 H 1.08009 * 119.93752 * 180.27215 * 17 16 15 31 31 H 1.07998 * 119.94369 * 180.02562 * 23 18 17 32 32 H 1.07999 * 120.05803 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5451 1.4403 0.7002 7 6 2.0081 -1.2027 0.0005 8 1 1.4682 -2.1381 0.0005 9 8 3.3560 -1.2026 0.0011 10 6 3.9679 -2.4035 0.0010 11 8 3.3060 -3.4229 0.0010 12 6 5.4386 -2.4804 0.0022 13 6 6.2005 -3.6165 0.0028 14 6 7.5355 -3.1289 0.0044 15 6 8.7791 -3.9396 0.0051 16 6 8.7066 -5.3309 0.0098 17 6 9.8659 -6.0798 0.0047 18 6 11.0981 -5.4515 0.0067 19 6 12.3606 -6.2745 0.0078 20 9 12.7498 -6.5297 1.3272 21 9 12.1282 -7.4859 -0.6522 22 9 13.3758 -5.5721 -0.6503 23 6 11.1760 -4.0705 0.0073 24 6 10.0228 -3.3118 0.0067 25 7 7.4504 -1.8220 0.0040 26 8 6.3015 -1.4464 0.0020 27 1 -0.4850 0.8400 -0.0004 28 1 5.8660 -4.6434 0.0029 29 1 7.7449 -5.8224 0.0135 30 1 9.8108 -7.1585 0.0039 31 1 12.1406 -3.5850 0.0085 32 1 10.0847 -2.2336 0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730859310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:53 Heat of formation + Delta-G solvation = -150.692868 kcal Electronic energy + Delta-G solvation = -25691.619493 eV Core-core repulsion = 20977.894554 eV Total energy + Delta-G solvation = -4713.724939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.19991 -48.71385 -48.66588 -46.16211 -41.27866 -40.51400 -37.74416 -35.91043 -34.64604 -33.46250 -32.44402 -32.22094 -28.24125 -27.52108 -25.46418 -24.67132 -23.80131 -23.05959 -21.48702 -20.33361 -19.88817 -19.52381 -19.46904 -19.36812 -18.97152 -17.82506 -17.31803 -16.77901 -16.62426 -16.20371 -15.91211 -15.82680 -15.54490 -15.38455 -15.12574 -15.01867 -14.89151 -14.81747 -14.58527 -14.39413 -14.31749 -14.29945 -13.96060 -13.49455 -13.07601 -12.61572 -12.53097 -12.42310 -12.24617 -12.20699 -11.93751 -11.63143 -11.05162 -10.90240 -10.20955 -10.00434 -8.64906 -6.49587 -0.73317 -0.42382 0.15357 0.99381 1.24646 1.35079 1.38483 1.55855 1.59143 1.70113 2.18171 2.25993 2.43668 2.56159 2.70202 2.85254 2.96626 3.23023 3.37443 3.69063 3.77251 3.86223 3.94277 4.10179 4.21251 4.31088 4.47933 4.64119 4.83117 5.00735 5.02242 5.22498 5.30235 5.53990 5.74900 6.22256 6.66575 6.73526 7.33263 8.45815 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.037557 B = 0.002207 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.349188 B =12682.435963 C =13253.300835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.029 3.971 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.406 4.406 8 H 0.075 0.925 9 O -0.234 6.234 10 C 0.487 3.513 11 O -0.533 6.533 12 C -0.041 4.041 13 C -0.128 4.128 14 C 0.056 3.944 15 C -0.002 4.002 16 C -0.090 4.090 17 C -0.065 4.065 18 C -0.180 4.180 19 C 0.513 3.487 20 F -0.179 7.179 21 F -0.176 7.176 22 F -0.178 7.178 23 C -0.068 4.068 24 C -0.098 4.098 25 N -0.344 5.344 26 O 0.115 5.885 27 H 0.295 0.705 28 H 0.216 0.784 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.130 -10.186 0.016 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.177 1.177 7 C -0.481 4.481 8 H 0.093 0.907 9 O -0.142 6.142 10 C 0.333 3.667 11 O -0.429 6.429 12 C -0.104 4.104 13 C -0.149 4.149 14 C -0.100 4.100 15 C -0.002 4.002 16 C -0.109 4.109 17 C -0.083 4.083 18 C -0.182 4.182 19 C 0.459 3.541 20 F -0.161 7.161 21 F -0.158 7.158 22 F -0.160 7.160 23 C -0.085 4.085 24 C -0.117 4.117 25 N -0.045 5.045 26 O 0.041 5.959 27 H 0.105 0.895 28 H 0.232 0.768 29 H 0.182 0.818 30 H 0.183 0.817 31 H 0.176 0.824 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 26.645 -9.341 0.021 28.235 hybrid contribution -0.643 -0.220 -0.013 0.680 sum 26.002 -9.561 0.008 27.704 Atomic orbital electron populations 1.69618 1.07392 1.30807 1.45441 1.25487 0.95881 1.02470 0.93655 0.85239 0.79220 0.76288 0.80176 1.18197 1.18391 1.17657 1.20487 0.76546 0.96578 1.54532 0.90712 1.83570 1.23139 1.31250 1.76206 1.19086 0.85238 0.82648 0.79690 1.90764 1.64633 1.36389 1.51138 1.22775 0.89515 0.88515 1.09616 1.23145 0.89445 1.00995 1.01270 1.22134 0.94637 0.89376 1.03871 1.17959 0.88637 0.92857 1.00793 1.21408 1.00515 0.91109 0.97830 1.21133 0.89754 1.02063 0.95312 1.20223 0.92807 0.94917 1.10229 1.18241 0.84130 0.78073 0.73646 1.93235 1.92161 1.94432 1.36244 1.93201 1.94479 1.46998 1.81090 1.93197 1.62919 1.78640 1.81220 1.21043 1.00053 0.91655 0.95787 1.21293 0.90548 1.01314 0.98521 1.74006 0.98272 1.15040 1.17216 1.85059 1.10436 1.33228 1.67142 0.89461 0.76752 0.81812 0.81694 0.82397 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.09 13.95 21.65 0.30 -50.79 16 2 C 0.03 1.57 5.50 84.92 0.47 2.04 16 3 Si 0.97 41.94 28.62 68.60 1.96 43.91 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.41 -23.73 10.11 67.97 0.69 -23.04 16 8 H 0.08 4.86 7.09 -2.91 -0.02 4.84 16 9 O -0.23 -12.18 8.58 12.33 0.11 -12.08 16 10 C 0.49 22.50 7.89 70.20 0.55 23.06 16 11 O -0.53 -26.96 16.16 19.67 0.32 -26.65 16 12 C -0.04 -1.46 7.35 24.31 0.18 -1.28 16 13 C -0.13 -3.42 10.30 22.90 0.24 -3.19 16 14 C 0.06 1.40 7.05 42.97 0.30 1.70 16 15 C 0.00 -0.03 5.88 -20.04 -0.12 -0.15 16 16 C -0.09 -1.25 9.60 22.48 0.22 -1.03 16 17 C -0.06 -0.79 9.38 22.24 0.21 -0.58 16 18 C -0.18 -2.49 5.46 -19.83 -0.11 -2.60 16 19 C 0.51 7.28 3.36 71.24 0.24 7.52 16 20 F -0.18 -2.81 17.30 44.97 0.78 -2.03 16 21 F -0.18 -2.56 16.45 44.97 0.74 -1.82 16 22 F -0.18 -2.68 16.45 44.97 0.74 -1.94 16 23 C -0.07 -0.94 9.38 22.24 0.21 -0.73 16 24 C -0.10 -1.66 9.70 22.48 0.22 -1.44 16 25 N -0.34 -10.34 11.78 -48.86 -0.58 -10.92 16 26 O 0.11 3.98 11.21 65.43 0.73 4.72 16 27 H 0.30 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.22 4.36 7.57 -2.91 -0.02 4.34 16 29 H 0.16 1.57 7.22 -2.91 -0.02 1.55 16 30 H 0.17 1.25 7.59 -2.91 -0.02 1.23 16 31 H 0.16 1.58 7.59 -2.91 -0.02 1.56 16 32 H 0.14 2.39 7.89 -2.91 -0.02 2.37 16 Total: -1.00 -66.32 316.06 9.61 -56.71 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.22 Total: 0.61 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 3.29 Total: 0.29 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.27 Total: -61.71 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: 1.16 Total: -34.01 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 2.26 Total: -5.79 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.96 Total: 43.91 kcal Total: -66.32 9.61 -56.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730859310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.984 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds