Wall clock time and date at job start Tue Mar 31 2020 15:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48504 * 109.47095 * 269.99834 * 3 2 1 5 5 H 1.48504 * 109.47078 * 29.99617 * 3 2 1 6 6 H 1.48501 * 109.47419 * 149.99891 * 3 2 1 7 7 C 1.38778 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99812 * 180.02562 * 7 2 1 9 9 O 1.34881 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.34784 * 116.99761 * 179.97438 * 9 7 2 11 11 O 1.21548 * 120.00157 * 0.02562 * 10 9 7 12 12 C 1.47334 * 119.99925 * 180.02562 * 10 9 7 13 13 C 1.36731 * 125.77789 * 180.31091 * 12 10 9 14 14 N 1.35065 * 106.77888 * 180.18109 * 13 12 10 15 15 C 1.40223 * 126.60624 * 179.84948 * 14 13 12 16 16 C 1.38855 * 120.06013 * 4.71342 * 15 14 13 17 17 C 1.38101 * 119.92894 * 179.97438 * 16 15 14 18 18 C 1.38297 * 120.06842 * 359.97438 * 17 16 15 19 19 C 1.38260 * 120.13449 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.97195 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.47078 * 270.02224 * 20 19 18 22 22 F 1.39901 * 109.46831 * 30.01896 * 20 19 18 23 23 F 1.39896 * 109.47427 * 150.01742 * 20 19 18 24 24 C 1.38144 * 120.06181 * 359.97438 * 19 18 17 25 25 N 1.40208 * 106.79084 * 359.58736 * 14 13 12 26 26 N 1.28747 * 108.41475 * 0.26046 * 25 14 13 27 27 H 0.97003 * 120.00092 * 0.02562 * 1 2 3 28 28 H 1.07997 * 126.61384 * 0.05777 * 13 12 10 29 29 H 1.07998 * 120.03772 * 359.69735 * 16 15 14 30 30 H 1.08001 * 119.96614 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.93843 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.03431 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2019 0.0005 8 1 3.0882 -1.2019 0.0010 9 8 1.3338 -2.3699 0.0005 10 6 2.0679 -3.5003 0.0005 11 8 3.2817 -3.4368 0.0010 12 6 1.3989 -4.8131 0.0000 13 6 2.0244 -6.0289 0.0059 14 7 1.0528 -6.9672 -0.0011 15 6 1.2333 -8.3578 -0.0016 16 6 2.5099 -8.8935 0.1045 17 6 2.6845 -10.2634 0.1043 18 6 1.5894 -11.1015 -0.0008 19 6 0.3170 -10.5710 -0.1066 20 6 -0.8737 -11.4875 -0.2215 21 9 -1.1264 -11.7567 -1.5709 22 9 -0.6069 -12.6850 0.4508 23 9 -1.9930 -10.8719 0.3488 24 6 0.1361 -9.2014 -0.1070 25 7 -0.1710 -6.2830 -0.0018 26 7 0.0701 -5.0183 -0.0011 27 1 -0.4850 0.8401 -0.0004 28 1 3.0898 -6.2052 0.0127 29 1 3.3658 -8.2395 0.1825 30 1 3.6772 -10.6808 0.1864 31 1 1.7283 -12.1725 -0.0003 32 1 -0.8580 -8.7875 -0.1900 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740376885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:52 Heat of formation + Delta-G solvation = -114.122062 kcal Electronic energy + Delta-G solvation = -25937.585909 eV Core-core repulsion = 21257.739550 eV Total energy + Delta-G solvation = -4679.846359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.26206 -48.77813 -48.72531 -43.65196 -40.95393 -40.53339 -37.32652 -36.07846 -34.33624 -33.19688 -32.38477 -31.21050 -27.86926 -27.30851 -25.68475 -25.16894 -23.48938 -22.56036 -21.80943 -20.42048 -19.88306 -19.58852 -19.45015 -18.71381 -17.82520 -17.51550 -17.41290 -16.86150 -16.34616 -16.30435 -16.18941 -15.96939 -15.63108 -15.45898 -15.20001 -15.07149 -14.87599 -14.80811 -14.66981 -14.41422 -13.91854 -13.65410 -13.49106 -13.21756 -13.08702 -12.57355 -12.55285 -12.39425 -12.36095 -12.14156 -12.02340 -11.36135 -10.79882 -10.70417 -10.49846 -9.84739 -8.55545 -6.35260 -0.83625 -0.29203 0.35230 0.52314 0.70188 1.36008 1.43979 1.51583 1.55602 2.03912 2.04928 2.24704 2.47125 2.55833 2.86449 3.00149 3.10641 3.29296 3.32868 3.55553 3.68234 3.78455 3.86128 3.99945 4.16376 4.28649 4.54357 4.76386 4.84381 5.00693 5.03787 5.14198 5.22430 5.58496 5.76621 6.44266 6.69964 6.86960 7.68975 8.65013 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.002338 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.301953 B =11974.694252 C =12679.926326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.007 4.007 3 Si 1.026 2.974 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.420 4.420 8 H 0.096 0.904 9 O -0.226 6.226 10 C 0.477 3.523 11 O -0.561 6.561 12 C -0.077 4.077 13 C 0.120 3.880 14 N -0.306 5.306 15 C 0.108 3.892 16 C -0.083 4.083 17 C -0.076 4.076 18 C -0.055 4.055 19 C -0.172 4.172 20 C 0.513 3.487 21 F -0.178 7.178 22 F -0.169 7.169 23 F -0.184 7.184 24 C -0.073 4.073 25 N -0.080 5.080 26 N -0.212 5.212 27 H 0.280 0.720 28 H 0.257 0.743 29 H 0.174 0.826 30 H 0.196 0.804 31 H 0.174 0.826 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -27.664 0.136 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.208 4.208 3 Si 0.844 3.156 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.113 0.887 9 O -0.132 6.132 10 C 0.324 3.676 11 O -0.458 6.458 12 C -0.214 4.214 13 C -0.033 4.033 14 N -0.085 5.085 15 C 0.018 3.982 16 C -0.103 4.103 17 C -0.094 4.094 18 C -0.074 4.074 19 C -0.174 4.174 20 C 0.459 3.541 21 F -0.160 7.160 22 F -0.150 7.150 23 F -0.165 7.165 24 C -0.094 4.094 25 N -0.059 5.059 26 N -0.085 5.085 27 H 0.090 0.910 28 H 0.273 0.727 29 H 0.192 0.808 30 H 0.213 0.787 31 H 0.192 0.808 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.874 -27.597 0.131 28.025 hybrid contribution 0.297 0.914 -0.064 0.964 sum 5.171 -26.683 0.067 27.179 Atomic orbital electron populations 1.70145 1.08105 1.29653 1.45644 1.26774 0.96879 1.02812 0.94363 0.84513 0.77752 0.73700 0.79650 1.18284 1.18689 1.17948 1.21677 0.92674 0.80519 1.54675 0.88678 1.84019 1.39927 1.13996 1.75250 1.19704 0.85031 0.84354 0.78506 1.90616 1.14458 1.87835 1.52924 1.20524 0.89485 0.93352 1.18005 1.23728 0.98386 0.85215 0.96016 1.47724 1.06253 1.06367 1.48136 1.17774 0.96500 0.76586 1.07357 1.21721 0.94133 0.98136 0.96326 1.21558 1.01227 0.90412 0.96222 1.21591 0.89536 1.03236 0.93014 1.19803 0.94553 0.92238 1.10817 1.18201 0.82807 0.79284 0.73851 1.93241 1.94867 1.94268 1.33587 1.93209 1.93716 1.47828 1.80290 1.93214 1.55591 1.82802 1.84932 1.20581 0.99266 0.92095 0.97418 1.82014 1.02730 0.97334 1.23811 1.74865 1.15727 1.08562 1.09374 0.91040 0.72742 0.80816 0.78734 0.80814 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.17 13.67 21.63 0.30 -54.88 16 2 C -0.01 -0.43 5.49 84.88 0.47 0.04 16 3 Si 1.03 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.42 -25.79 9.65 67.95 0.66 -25.14 16 8 H 0.10 5.70 6.86 -2.91 -0.02 5.68 16 9 O -0.23 -14.07 9.75 10.54 0.10 -13.97 16 10 C 0.48 25.15 7.90 70.22 0.55 25.70 16 11 O -0.56 -29.44 16.11 19.68 0.32 -29.12 16 12 C -0.08 -3.30 7.02 40.78 0.29 -3.02 16 13 C 0.12 3.47 10.60 83.84 0.89 4.36 16 14 N -0.31 -8.56 3.82 -186.81 -0.71 -9.27 16 15 C 0.11 2.09 6.69 38.08 0.25 2.34 16 16 C -0.08 -0.81 9.47 22.38 0.21 -0.60 16 17 C -0.08 -0.33 10.04 22.25 0.22 -0.11 16 18 C -0.06 -0.40 9.40 22.29 0.21 -0.19 16 19 C -0.17 -2.47 5.45 -19.88 -0.11 -2.58 16 20 C 0.51 8.25 3.36 71.24 0.24 8.49 16 21 F -0.18 -3.15 17.30 44.97 0.78 -2.37 16 22 F -0.17 -2.39 16.46 44.97 0.74 -1.65 16 23 F -0.18 -3.70 16.46 44.97 0.74 -2.96 16 24 C -0.07 -1.43 9.03 22.38 0.20 -1.23 16 25 N -0.08 -2.99 13.13 37.02 0.49 -2.50 16 26 N -0.21 -9.58 12.39 -50.02 -0.62 -10.20 16 27 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.26 4.58 7.15 -2.91 -0.02 4.56 16 29 H 0.17 0.78 6.83 -2.91 -0.02 0.76 16 30 H 0.20 -0.73 8.06 -2.91 -0.02 -0.75 16 31 H 0.17 0.31 7.60 -2.91 -0.02 0.29 16 32 H 0.14 3.12 7.28 -2.91 -0.02 3.10 16 Total: -1.00 -83.36 316.14 9.46 -73.90 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: 1.22 Total: -0.45 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.08 Total: 8.07 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.55 Total: -76.86 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: 0.42 Total: -43.09 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 2.26 Total: -6.97 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -83.36 9.46 -73.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740376885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.223 kcal (2) G-P(sol) polarization free energy of solvation -83.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds