Wall clock time and date at job start Tue Mar 31 2020 14:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86807 * 119.99712 * 2 1 4 4 H 1.48495 * 109.47356 * 270.00020 * 3 2 1 5 5 H 1.48502 * 109.47058 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47059 * 149.99943 * 3 2 1 7 7 C 1.38786 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99465 * 359.97438 * 7 2 1 9 9 O 1.34851 * 120.00399 * 179.97438 * 7 2 1 10 10 C 1.34841 * 116.99893 * 179.97438 * 9 7 2 11 11 O 1.21612 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.46901 * 119.99648 * 179.97438 * 10 9 7 13 13 N 1.35929 * 126.63635 * 5.43106 * 12 10 9 14 14 C 1.29920 * 108.74463 * 180.29949 * 13 12 10 15 15 O 1.34057 * 109.81953 * 359.72797 * 14 13 12 16 16 C 1.34762 * 108.25355 * 359.97438 * 15 14 13 17 17 C 1.47534 * 126.77504 * 179.97438 * 16 15 14 18 18 C 1.39732 * 120.16310 * 231.26471 * 17 16 15 19 19 C 1.37896 * 119.84100 * 180.32046 * 18 17 16 20 20 C 1.38402 * 120.15948 * 359.69764 * 19 18 17 21 21 C 1.38363 * 120.31897 * 0.02562 * 20 19 18 22 22 C 1.50704 * 119.91876 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46964 * 270.01603 * 22 21 20 24 24 F 1.39899 * 109.47219 * 30.01668 * 22 21 20 25 25 F 1.39899 * 109.47002 * 150.01969 * 22 21 20 26 26 C 1.37939 * 120.16176 * 359.97438 * 21 20 19 27 27 H 0.96999 * 120.00484 * 0.02562 * 1 2 3 28 28 H 1.08004 * 125.08926 * 179.70041 * 14 13 12 29 29 H 1.08008 * 120.08060 * 0.02562 * 18 17 16 30 30 H 1.08004 * 119.92198 * 179.72009 * 19 18 17 31 31 H 1.07999 * 119.84167 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.08199 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0083 -1.2019 -0.0005 8 1 1.4683 -2.1372 -0.0005 9 8 3.3568 -1.2018 -0.0011 10 6 3.9690 -2.4033 -0.0010 11 8 3.3067 -3.4232 -0.0010 12 6 5.4360 -2.4800 -0.0021 13 7 6.3029 -1.4380 0.1000 14 6 7.5168 -1.8988 0.0550 15 8 7.4920 -3.2334 -0.0696 16 6 6.2046 -3.6303 -0.1041 17 6 5.7102 -5.0143 -0.2329 18 6 4.7607 -5.3329 -1.2073 19 6 4.2982 -6.6273 -1.3175 20 6 4.7770 -7.6112 -0.4700 21 6 5.7215 -7.3043 0.4934 22 6 6.2361 -8.3827 1.4119 23 9 5.4312 -8.4453 2.5544 24 9 6.2025 -9.6145 0.7496 25 9 7.5523 -8.0891 1.7842 26 6 6.1932 -6.0139 0.6153 27 1 -0.4851 0.8400 -0.0004 28 1 8.4118 -1.2968 0.1094 29 1 4.3863 -4.5661 -1.8694 30 1 3.5610 -6.8740 -2.0672 31 1 4.4115 -8.6234 -0.5611 32 1 6.9301 -5.7757 1.3680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752201885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:33 Heat of formation + Delta-G solvation = -169.322964 kcal Electronic energy + Delta-G solvation = -26909.632001 eV Core-core repulsion = 22195.099201 eV Total energy + Delta-G solvation = -4714.532801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.30621 -47.83593 -47.74892 -43.21245 -39.44229 -39.04254 -35.55647 -34.71083 -32.90538 -32.43189 -31.87222 -29.16149 -26.19688 -26.16343 -24.02344 -23.43741 -22.19343 -21.53200 -20.19086 -18.67649 -18.60214 -18.50579 -18.06357 -17.67996 -16.74110 -16.42094 -16.24261 -15.45130 -15.20302 -14.84387 -14.67687 -14.62357 -14.49363 -14.26805 -14.14930 -13.96864 -13.92428 -13.84907 -13.60959 -12.94864 -12.77158 -12.51710 -12.18290 -11.81779 -11.60230 -11.45109 -11.12009 -10.66644 -10.55737 -10.41582 -9.82439 -9.79406 -9.43958 -9.22698 -8.77679 -8.47407 -6.50609 -4.20927 0.49499 0.90688 1.40394 2.23918 2.44825 2.54965 3.18886 3.22367 3.33184 3.41623 3.55162 3.74519 3.78905 3.86236 4.20013 4.26644 4.27948 4.56457 4.63584 4.83298 4.98980 5.03699 5.17233 5.29995 5.45651 5.61777 5.66348 5.81135 5.93017 6.14752 6.23483 6.42152 6.53389 7.56364 7.56695 7.90785 8.46190 8.86579 9.55883 10.55868 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.003484 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.867025 B = 8033.877224 C = 8915.027665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.374 4.374 8 H 0.114 0.886 9 O -0.220 6.220 10 C 0.474 3.526 11 O -0.527 6.527 12 C 0.011 3.989 13 N -0.447 5.447 14 C 0.173 3.827 15 O -0.193 6.193 16 C 0.042 3.958 17 C -0.014 4.014 18 C -0.012 4.012 19 C -0.118 4.118 20 C -0.056 4.056 21 C -0.194 4.194 22 C 0.512 3.488 23 F -0.175 7.175 24 F -0.178 7.178 25 F -0.178 7.178 26 C -0.044 4.044 27 H 0.283 0.717 28 H 0.256 0.744 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.594 -12.806 -1.327 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.449 4.449 8 H 0.132 0.868 9 O -0.127 6.127 10 C 0.321 3.679 11 O -0.423 6.423 12 C -0.109 4.109 13 N -0.176 5.176 14 C -0.055 4.055 15 O -0.080 6.080 16 C -0.013 4.013 17 C -0.014 4.014 18 C -0.030 4.030 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.196 4.196 22 C 0.458 3.542 23 F -0.156 7.156 24 F -0.159 7.159 25 F -0.160 7.160 26 C -0.062 4.062 27 H 0.093 0.907 28 H 0.272 0.728 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.083 -12.306 -1.228 19.505 hybrid contribution 0.569 0.191 0.253 0.652 sum 15.652 -12.114 -0.975 19.817 Atomic orbital electron populations 1.69593 1.05812 1.28903 1.45552 1.24580 0.95017 0.98998 0.95068 0.86221 0.80750 0.80988 0.79314 1.19645 1.20609 1.17610 1.20784 0.75991 0.97225 1.50881 0.86827 1.83637 1.23820 1.30284 1.74922 1.18654 0.84607 0.83197 0.81421 1.90745 1.64777 1.35544 1.51222 1.21239 0.93696 0.87686 1.08296 1.70876 0.99810 1.31315 1.15553 1.28119 0.98633 0.78044 1.00697 1.84437 1.27776 1.26445 1.69362 1.21323 0.80422 0.94036 1.05547 1.17247 0.99111 0.86688 0.98395 1.21443 0.90796 0.96640 0.94151 1.21054 1.00362 0.91987 1.00196 1.21066 0.93355 1.00540 0.92473 1.19706 1.04866 0.93661 1.01322 1.18227 0.75360 0.81203 0.79408 1.93243 1.73317 1.96520 1.52547 1.93180 1.96214 1.45918 1.80609 1.93186 1.37352 1.93206 1.92219 1.20910 0.97472 0.90465 0.97331 0.90681 0.72825 0.84235 0.83926 0.84413 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.82 13.96 55.49 0.77 -24.05 16 2 C 0.07 1.95 5.50 -17.52 -0.10 1.86 16 3 Si 0.90 21.52 28.62 -169.99 -4.86 16.65 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.25 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.37 -10.93 10.11 30.94 0.31 -10.62 16 8 H 0.11 3.58 7.09 -52.48 -0.37 3.21 16 9 O -0.22 -5.98 8.58 -21.93 -0.19 -6.17 16 10 C 0.47 11.51 7.83 34.24 0.27 11.78 16 11 O -0.53 -13.16 13.08 -19.35 -0.25 -13.41 16 12 C 0.01 0.22 7.09 -82.37 -0.58 -0.37 16 13 N -0.45 -8.07 11.34 -11.05 -0.13 -8.20 16 14 C 0.17 2.14 13.15 51.95 0.68 2.83 16 15 O -0.19 -2.62 10.74 5.10 0.05 -2.56 16 16 C 0.04 0.68 6.85 -35.62 -0.24 0.44 16 17 C -0.01 -0.21 5.27 -105.00 -0.55 -0.76 16 18 C -0.01 -0.18 7.74 -39.15 -0.30 -0.48 16 19 C -0.12 -1.40 10.03 -39.65 -0.40 -1.79 16 20 C -0.06 -0.62 9.39 -39.48 -0.37 -0.99 16 21 C -0.19 -2.36 5.45 -104.68 -0.57 -2.93 16 22 C 0.51 5.87 3.36 36.01 0.12 5.99 16 23 F -0.17 -2.19 17.30 2.25 0.04 -2.15 16 24 F -0.18 -1.92 16.45 2.25 0.04 -1.88 16 25 F -0.18 -2.04 16.45 2.25 0.04 -2.00 16 26 C -0.04 -0.58 9.14 -39.14 -0.36 -0.93 16 27 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.26 1.56 8.06 -52.48 -0.42 1.13 16 29 H 0.14 2.14 7.60 -52.48 -0.40 1.74 16 30 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.14 1.18 7.59 -52.49 -0.40 0.78 16 32 H 0.14 1.63 7.60 -52.49 -0.40 1.23 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -33.13 313.06 -3.41 -36.54 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -1.55 Total: -1.49 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.09 Total: 4.01 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.65 Total: -32.25 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.39 Total: -22.14 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.11 Total: -6.03 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.13 -3.41 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752201885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.783 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds