Wall clock time and date at job start Tue Mar 31 2020 14:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86807 * 119.99712 * 2 1 4 4 H 1.48495 * 109.47356 * 270.00020 * 3 2 1 5 5 H 1.48502 * 109.47058 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47059 * 149.99943 * 3 2 1 7 7 C 1.38786 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99465 * 359.97438 * 7 2 1 9 9 O 1.34851 * 120.00399 * 179.97438 * 7 2 1 10 10 C 1.34841 * 116.99893 * 179.97438 * 9 7 2 11 11 O 1.21612 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.46901 * 119.99648 * 179.97438 * 10 9 7 13 13 N 1.35929 * 126.63635 * 5.43106 * 12 10 9 14 14 C 1.29920 * 108.74463 * 180.29949 * 13 12 10 15 15 O 1.34057 * 109.81953 * 359.72797 * 14 13 12 16 16 C 1.34762 * 108.25355 * 359.97438 * 15 14 13 17 17 C 1.47534 * 126.77504 * 179.97438 * 16 15 14 18 18 C 1.39732 * 120.16310 * 231.26471 * 17 16 15 19 19 C 1.37896 * 119.84100 * 180.32046 * 18 17 16 20 20 C 1.38402 * 120.15948 * 359.69764 * 19 18 17 21 21 C 1.38363 * 120.31897 * 0.02562 * 20 19 18 22 22 C 1.50704 * 119.91876 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46964 * 270.01603 * 22 21 20 24 24 F 1.39899 * 109.47219 * 30.01668 * 22 21 20 25 25 F 1.39899 * 109.47002 * 150.01969 * 22 21 20 26 26 C 1.37939 * 120.16176 * 359.97438 * 21 20 19 27 27 H 0.96999 * 120.00484 * 0.02562 * 1 2 3 28 28 H 1.08004 * 125.08926 * 179.70041 * 14 13 12 29 29 H 1.08008 * 120.08060 * 0.02562 * 18 17 16 30 30 H 1.08004 * 119.92198 * 179.72009 * 19 18 17 31 31 H 1.07999 * 119.84167 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.08199 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0083 -1.2019 -0.0005 8 1 1.4683 -2.1372 -0.0005 9 8 3.3568 -1.2018 -0.0011 10 6 3.9690 -2.4033 -0.0010 11 8 3.3067 -3.4232 -0.0010 12 6 5.4360 -2.4800 -0.0021 13 7 6.3029 -1.4380 0.1000 14 6 7.5168 -1.8988 0.0550 15 8 7.4920 -3.2334 -0.0696 16 6 6.2046 -3.6303 -0.1041 17 6 5.7102 -5.0143 -0.2329 18 6 4.7607 -5.3329 -1.2073 19 6 4.2982 -6.6273 -1.3175 20 6 4.7770 -7.6112 -0.4700 21 6 5.7215 -7.3043 0.4934 22 6 6.2361 -8.3827 1.4119 23 9 5.4312 -8.4453 2.5544 24 9 6.2025 -9.6145 0.7496 25 9 7.5523 -8.0891 1.7842 26 6 6.1932 -6.0139 0.6153 27 1 -0.4851 0.8400 -0.0004 28 1 8.4118 -1.2968 0.1094 29 1 4.3863 -4.5661 -1.8694 30 1 3.5610 -6.8740 -2.0672 31 1 4.4115 -8.6234 -0.5611 32 1 6.9301 -5.7757 1.3680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752201885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:32 Heat of formation + Delta-G solvation = -192.026615 kcal Electronic energy + Delta-G solvation = -26910.616505 eV Core-core repulsion = 22195.099201 eV Total energy + Delta-G solvation = -4715.517305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22344 -48.72962 -48.68791 -44.45793 -41.09683 -40.39039 -37.52134 -36.03220 -34.55510 -34.04212 -32.89541 -30.44424 -28.09288 -27.15478 -25.56374 -24.61068 -23.23279 -22.83045 -21.64932 -20.22626 -19.78401 -19.54499 -19.42387 -19.19872 -17.99496 -17.76835 -17.44883 -16.87380 -16.59935 -16.38404 -16.15611 -15.76825 -15.56800 -15.43898 -15.24993 -15.13297 -14.96213 -14.83724 -14.68351 -14.47675 -14.17147 -13.99851 -13.79747 -13.43262 -12.79439 -12.64629 -12.46869 -12.40787 -12.34133 -11.95675 -11.86621 -11.50306 -10.88963 -10.77869 -10.32381 -9.69862 -8.61613 -6.44790 -0.69535 -0.13105 0.21093 0.94072 1.26193 1.32753 1.35423 1.53476 1.56667 2.00757 2.11322 2.26060 2.32338 2.61075 2.88862 2.92506 3.16876 3.32687 3.38032 3.66409 3.79866 3.90850 4.04608 4.14907 4.26921 4.43332 4.48582 4.66312 4.90766 5.06115 5.08787 5.20555 5.39467 5.52852 5.80744 6.26392 6.46099 6.73738 7.49341 8.49951 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.003484 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.867025 B = 8033.877224 C = 8915.027665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.404 4.404 8 H 0.071 0.929 9 O -0.239 6.239 10 C 0.483 3.517 11 O -0.540 6.540 12 C -0.039 4.039 13 N -0.495 5.495 14 C 0.215 3.785 15 O -0.179 6.179 16 C 0.076 3.924 17 C -0.044 4.044 18 C -0.032 4.032 19 C -0.116 4.116 20 C -0.044 4.044 21 C -0.198 4.198 22 C 0.520 3.480 23 F -0.181 7.181 24 F -0.171 7.171 25 F -0.177 7.177 26 C -0.042 4.042 27 H 0.292 0.708 28 H 0.320 0.680 29 H 0.120 0.880 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.584 -13.376 -1.311 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.176 4.176 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.088 0.912 9 O -0.147 6.147 10 C 0.331 3.669 11 O -0.436 6.436 12 C -0.157 4.157 13 N -0.223 5.223 14 C -0.013 4.013 15 O -0.066 6.066 16 C 0.020 3.980 17 C -0.045 4.045 18 C -0.050 4.050 19 C -0.134 4.134 20 C -0.062 4.062 21 C -0.199 4.199 22 C 0.466 3.534 23 F -0.162 7.162 24 F -0.152 7.152 25 F -0.158 7.158 26 C -0.060 4.060 27 H 0.102 0.898 28 H 0.335 0.665 29 H 0.138 0.862 30 H 0.186 0.814 31 H 0.187 0.813 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 18.051 -12.895 -1.215 22.217 hybrid contribution -0.130 0.056 0.230 0.270 sum 17.921 -12.839 -0.984 22.067 Atomic orbital electron populations 1.69662 1.07209 1.30406 1.46959 1.25422 0.95874 1.02300 0.94024 0.85207 0.78943 0.76536 0.79942 1.18347 1.18370 1.18386 1.20453 0.77132 0.96301 1.54120 0.91164 1.83652 1.22459 1.31555 1.77044 1.19536 0.86699 0.82283 0.78401 1.90711 1.66139 1.35878 1.50833 1.20730 0.91664 0.90010 1.13280 1.70779 1.01501 1.31666 1.18344 1.29489 0.98708 0.77440 0.95617 1.84521 1.25927 1.27263 1.68903 1.21457 0.80916 0.93726 1.01949 1.17404 1.00495 0.86627 0.99951 1.21477 0.91434 0.97622 0.94510 1.21354 1.00344 0.90945 1.00755 1.21449 0.92002 1.01726 0.91030 1.19875 1.04949 0.93513 1.01597 1.18036 0.75250 0.81154 0.79007 1.93238 1.73553 1.96549 1.52900 1.93197 1.96178 1.45420 1.80421 1.93191 1.37209 1.93218 1.92187 1.21018 0.97517 0.90451 0.97019 0.89786 0.66530 0.86170 0.81447 0.81298 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.12 13.96 21.63 0.30 -53.82 16 2 C 0.03 1.50 5.50 84.88 0.47 1.96 16 3 Si 0.97 45.23 28.62 68.60 1.96 47.19 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.40 -25.14 10.11 67.95 0.69 -24.45 16 8 H 0.07 4.82 7.09 -2.91 -0.02 4.80 16 9 O -0.24 -13.61 8.58 10.26 0.09 -13.52 16 10 C 0.48 24.57 7.83 70.09 0.55 25.11 16 11 O -0.54 -28.53 13.08 19.47 0.25 -28.27 16 12 C -0.04 -1.57 7.09 40.89 0.29 -1.28 16 13 N -0.50 -17.23 11.34 -303.79 -3.44 -20.68 16 14 C 0.21 4.54 13.15 130.53 1.72 6.26 16 15 O -0.18 -4.31 10.74 -4.68 -0.05 -4.36 16 16 C 0.08 2.43 6.85 24.84 0.17 2.60 16 17 C -0.04 -1.31 5.27 -20.11 -0.11 -1.42 16 18 C -0.03 -0.94 7.74 22.55 0.17 -0.77 16 19 C -0.12 -2.60 10.03 22.23 0.22 -2.38 16 20 C -0.04 -0.87 9.39 22.34 0.21 -0.66 16 21 C -0.20 -4.37 5.45 -19.90 -0.11 -4.48 16 22 C 0.52 10.62 3.36 71.24 0.24 10.86 16 23 F -0.18 -4.16 17.30 44.97 0.78 -3.38 16 24 F -0.17 -3.19 16.45 44.97 0.74 -2.45 16 25 F -0.18 -3.61 16.45 44.97 0.74 -2.87 16 26 C -0.04 -1.04 9.14 22.55 0.21 -0.83 16 27 H 0.29 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.32 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.12 3.91 7.60 -2.91 -0.02 3.88 16 30 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.17 2.26 7.59 -2.91 -0.02 2.24 16 32 H 0.15 3.24 7.60 -2.91 -0.02 3.21 16 Total: -1.00 -77.73 313.06 7.31 -70.42 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.22 Total: 1.20 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 4.72 Total: 10.53 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -3.14 Total: -74.50 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: 0.29 Total: -46.15 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 2.26 Total: -8.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.96 Total: 47.19 kcal Total: -77.73 7.31 -70.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752201885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.605 kcal (2) G-P(sol) polarization free energy of solvation -77.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds