Wall clock time and date at job start Tue Mar 31 2020 15:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39968 * 120.47414 * 30.40127 * 3 2 1 5 5 C 1.38340 * 118.37080 * 179.70811 * 4 3 2 6 6 C 1.39390 * 119.23965 * 0.51123 * 5 4 3 7 7 C 1.48144 * 119.55457 * 179.75088 * 6 5 4 8 8 O 1.21518 * 119.99958 * 359.72786 * 7 6 5 9 9 N 1.34775 * 119.99815 * 180.02562 * 7 6 5 10 10 C 1.39081 * 119.99939 * 176.41336 * 9 7 6 11 11 C 1.39531 * 119.83524 * 217.58891 * 10 9 7 12 12 C 1.36348 * 120.16513 * 179.75545 * 11 10 9 13 13 C 1.40894 * 119.83005 * 0.53588 * 12 11 10 14 14 C 1.41120 * 120.16132 * 179.69268 * 13 12 11 15 15 H 1.07996 * 120.00007 * 157.91573 * 14 13 12 16 16 C 1.39929 * 119.99763 * 337.92269 * 14 13 12 17 17 N 1.30857 * 119.99969 * 327.58578 * 16 14 13 18 18 Si 1.86798 * 119.99757 * 147.59507 * 16 14 13 19 19 H 1.48502 * 109.47189 * 94.98377 * 18 16 14 20 20 H 1.48501 * 109.47279 * 214.98108 * 18 16 14 21 21 H 1.48496 * 109.47397 * 334.98545 * 18 16 14 22 22 C 1.40892 * 119.67940 * 359.72050 * 13 12 11 23 23 C 1.36356 * 119.82984 * 359.97438 * 22 13 12 24 24 N 1.32791 * 120.88852 * 359.47980 * 6 5 4 25 25 C 1.31479 * 121.78011 * 0.26861 * 24 6 5 26 26 Cl 1.73604 * 119.66876 * 180.02562 * 25 24 6 27 27 H 1.07996 * 120.81050 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.37902 * 180.28441 * 5 4 3 29 29 H 0.96997 * 120.00581 * 356.40571 * 9 7 6 30 30 H 1.08004 * 119.91637 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.08685 * 180.23223 * 12 11 10 32 32 H 0.96998 * 119.99693 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.08421 * 179.97438 * 22 13 12 34 34 H 1.07993 * 119.91399 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2783 -1.0395 -0.6105 5 6 4.6607 -0.9920 -0.5901 6 6 5.2961 0.0758 0.0418 7 6 6.7762 0.1308 0.0726 8 8 7.4280 -0.7537 -0.4466 9 7 7.3997 1.1588 0.6816 10 6 8.7873 1.1730 0.7758 11 6 9.3996 1.6615 1.9305 12 6 10.7593 1.6739 2.0320 13 6 11.5463 1.2023 0.9628 14 6 12.9542 1.2180 1.0579 15 1 13.5447 0.5596 0.4381 16 6 13.5851 2.0865 1.9555 17 7 13.0514 3.2507 2.2242 18 14 15.1894 1.5841 2.7699 19 1 16.3312 2.1276 1.9914 20 1 15.2323 2.1228 4.1531 21 1 15.2801 0.1025 2.8127 22 6 10.9209 0.7155 -0.2020 23 6 9.5600 0.7034 -0.2868 24 7 4.5925 1.0470 0.6119 25 6 3.2777 1.0421 0.6104 26 17 2.4127 2.3406 1.3718 27 1 2.7598 -1.8569 -1.0894 28 1 5.2411 -1.7751 -1.0553 29 1 6.8809 1.8888 1.0540 30 1 8.7951 2.0267 2.7475 31 1 11.2318 2.0489 2.9278 32 1 13.4886 3.8525 2.8467 33 1 11.5178 0.3528 -1.0257 34 1 9.0792 0.3302 -1.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753003645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:42 Heat of formation + Delta-G solvation = 35.171099 kcal Electronic energy + Delta-G solvation = -22733.271518 eV Core-core repulsion = 19042.464901 eV Total energy + Delta-G solvation = -3690.806617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.09612 -40.75188 -39.02234 -37.95596 -37.84391 -36.27745 -34.94935 -34.07415 -32.77596 -31.46255 -30.86994 -27.68917 -26.13177 -24.99027 -23.57823 -22.73050 -21.65302 -20.56212 -19.50389 -19.18162 -18.61400 -17.72591 -17.01465 -16.69073 -16.65756 -15.89500 -15.79860 -15.69962 -15.10017 -14.94195 -14.73195 -14.43732 -14.38066 -14.23730 -13.95760 -13.81378 -13.54563 -13.36065 -12.93616 -12.82791 -12.69000 -12.59156 -12.33149 -11.96700 -11.58518 -11.51342 -11.27885 -11.12187 -10.82728 -10.50247 -10.34749 -9.46840 -9.01922 -8.72826 -6.22426 -1.17667 -0.24118 0.37667 0.78340 1.16289 1.23588 1.35446 1.40477 1.49372 1.59031 1.97136 2.05613 2.20723 2.38631 2.52110 2.67684 2.92672 3.38500 3.62062 3.72457 3.80127 3.94965 4.40089 4.48814 4.56096 4.66115 4.92448 5.03727 5.10908 5.15154 5.27311 5.42792 5.65348 5.83271 5.96298 6.06553 6.09869 6.20028 6.35293 6.60544 6.66591 6.89911 6.97254 7.23847 8.20363 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.002324 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.835911 B =12046.024095 C =12792.779062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.273 3.727 3 C -0.040 4.040 4 C 0.014 3.986 5 C -0.097 4.097 6 C 0.124 3.876 7 C 0.550 3.450 8 O -0.547 6.547 9 N -0.619 5.619 10 C -0.017 4.017 11 C -0.096 4.096 12 C -0.191 4.191 13 C 0.085 3.915 14 C -0.500 4.500 15 H 0.078 0.922 16 C 0.051 3.949 17 N -0.796 5.796 18 Si 0.971 3.029 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.260 1.260 22 C -0.243 4.243 23 C -0.070 4.070 24 N -0.466 5.466 25 C 0.210 3.790 26 Cl -0.009 7.009 27 H 0.211 0.789 28 H 0.184 0.816 29 H 0.418 0.582 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.295 0.705 33 H 0.097 0.903 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -4.834 -2.035 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.043 4.043 3 C -0.047 4.047 4 C -0.014 4.014 5 C -0.118 4.118 6 C -0.014 4.014 7 C 0.336 3.664 8 O -0.424 6.424 9 N -0.262 5.262 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.211 4.211 13 C 0.083 3.917 14 C -0.527 4.527 15 H 0.096 0.904 16 C -0.169 4.169 17 N -0.419 5.419 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.187 1.187 21 H -0.184 1.184 22 C -0.263 4.263 23 C -0.089 4.089 24 N -0.179 5.179 25 C 0.039 3.961 26 Cl 0.020 6.980 27 H 0.227 0.773 28 H 0.202 0.798 29 H 0.255 0.745 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.716 -4.402 -1.808 19.312 hybrid contribution 0.638 0.203 0.335 0.748 sum -18.078 -4.200 -1.474 18.618 Atomic orbital electron populations 1.81317 1.12271 1.07361 1.07927 1.24950 0.91730 0.93826 0.93805 1.16726 0.85561 0.97686 1.04750 1.22172 0.92359 0.95707 0.91115 1.22409 0.95067 0.98044 0.96301 1.21111 0.92678 0.91886 0.95745 1.18181 0.86382 0.81868 0.79946 1.90798 1.65995 1.39117 1.46522 1.42707 1.05177 1.22734 1.55607 1.17082 0.81697 1.15435 0.96777 1.20427 0.94664 1.00920 0.95607 1.20638 0.92768 1.08552 0.99120 1.17934 0.93983 0.89125 0.90699 1.19741 0.92253 1.19739 1.20985 0.90385 1.26747 1.02923 0.92578 0.94636 1.69936 1.40550 1.05577 1.25862 0.85375 0.77057 0.80124 0.78336 1.18447 1.18673 1.18387 1.20740 0.94129 1.13010 0.98410 1.20426 0.93299 0.98439 0.96766 1.66865 1.06770 1.26726 1.17549 1.21703 0.88930 0.90347 0.95079 1.98468 1.72573 1.47616 1.79387 0.77261 0.79838 0.74459 0.86332 0.88432 0.89453 0.88503 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.01 18.54 19.00 0.35 -7.66 16 2 C 0.27 4.11 14.41 88.33 1.27 5.38 16 3 C -0.04 -0.52 5.75 -21.18 -0.12 -0.64 16 4 C 0.01 0.11 9.89 22.71 0.22 0.33 16 5 C -0.10 -1.32 9.61 22.57 0.22 -1.11 16 6 C 0.12 2.69 6.75 41.91 0.28 2.97 16 7 C 0.55 17.14 7.62 86.88 0.66 17.81 16 8 O -0.55 -20.20 13.92 -3.77 -0.05 -20.25 16 9 N -0.62 -20.97 5.28 -305.46 -1.61 -22.59 16 10 C -0.02 -0.72 6.25 38.61 0.24 -0.48 16 11 C -0.10 -4.28 9.90 22.14 0.22 -4.06 16 12 C -0.19 -9.71 8.74 22.48 0.20 -9.52 16 13 C 0.09 4.58 5.57 -21.27 -0.12 4.46 16 14 C -0.50 -26.53 8.94 23.39 0.21 -26.32 16 15 H 0.08 4.04 8.02 -2.91 -0.02 4.02 16 16 C 0.05 2.49 4.77 85.25 0.41 2.90 16 17 N -0.80 -39.82 11.78 21.83 0.26 -39.57 16 18 Si 0.97 36.56 29.66 68.60 2.03 38.59 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 22 C -0.24 -12.29 9.74 22.48 0.22 -12.07 16 23 C -0.07 -3.23 8.59 22.14 0.19 -3.04 16 24 N -0.47 -9.89 9.50 -174.84 -1.66 -11.55 16 25 C 0.21 3.71 7.31 85.18 0.62 4.33 16 26 Cl -0.01 -0.16 28.18 -2.72 -0.08 -0.24 16 27 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 16 28 H 0.18 2.10 7.63 -2.91 -0.02 2.08 16 29 H 0.42 12.19 8.14 -92.71 -0.76 11.43 16 30 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.10 5.07 6.53 -2.91 -0.02 5.05 16 32 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 33 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.11 4.88 6.45 -2.91 -0.02 4.86 16 Total: -1.00 -64.39 331.24 4.41 -59.98 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.44 Total: 22.34 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.72 Total: -19.06 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.66 Total: -81.36 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -64.39 4.41 -59.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753003645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.149 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds