Wall clock time and date at job start Tue Mar 31 2020 15:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47106 * 299.99866 * 3 2 1 6 6 H 1.48507 * 109.47133 * 59.99793 * 3 2 1 7 7 C 1.38988 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.37315 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.36500 * 126.06664 * 180.32521 * 9 7 2 11 11 C 1.35691 * 107.50702 * 180.11699 * 10 9 7 12 12 N 1.40537 * 126.08862 * 179.83673 * 11 10 9 13 13 C 1.34777 * 120.00378 * 179.71703 * 12 11 10 14 14 O 1.21612 * 119.99642 * 0.02562 * 13 12 11 15 15 C 1.47568 * 119.99848 * 180.02562 * 13 12 11 16 16 C 1.39780 * 120.11454 * 359.97438 * 15 13 12 17 17 C 1.37964 * 119.96415 * 180.02562 * 16 15 13 18 18 F 1.35106 * 119.90033 * 180.02562 * 17 16 15 19 19 C 1.38833 * 120.20028 * 0.02562 * 17 16 15 20 20 F 1.35100 * 119.89130 * 180.02562 * 19 17 16 21 21 C 1.38836 * 120.22605 * 359.97438 * 19 17 16 22 22 O 1.36020 * 119.98953 * 180.27200 * 21 19 17 23 23 C 1.38655 * 120.03033 * 0.02562 * 21 19 17 24 24 F 1.35099 * 120.09643 * 179.97438 * 23 21 19 25 25 C 1.40669 * 107.83160 * 359.58365 * 11 10 9 26 26 N 1.30906 * 108.38391 * 0.25596 * 25 11 10 27 27 H 0.97005 * 119.99762 * 0.02562 * 1 2 3 28 28 H 1.07996 * 126.24759 * 359.97438 * 10 9 7 29 29 H 0.97005 * 119.99773 * 359.72571 * 12 11 10 30 30 H 1.08000 * 120.01670 * 359.97438 * 16 15 13 31 31 H 0.96697 * 114.00534 * 269.73690 * 22 21 19 32 32 H 1.07996 * 125.80970 * 180.26637 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8883 2.3964 -1.2125 6 1 1.8882 2.3965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3213 -2.3928 0.0005 10 6 1.8750 -3.6404 0.0073 11 6 0.8578 -4.5385 0.0020 12 7 0.9888 -5.9377 0.0028 13 6 -0.1104 -6.7176 0.0029 14 8 -1.2157 -6.2104 0.0017 15 6 0.0273 -8.1868 0.0043 16 6 1.2966 -8.7722 0.0051 17 6 1.4218 -10.1462 0.0059 18 9 2.6493 -10.7106 0.0072 19 6 0.2902 -10.9505 0.0054 20 9 0.4200 -12.2953 0.0067 21 6 -0.9745 -10.3777 0.0046 22 8 -2.0799 -11.1703 0.0097 23 6 -1.1113 -8.9979 0.0038 24 9 -2.3412 -8.4391 0.0025 25 6 -0.3514 -3.8197 0.0015 26 7 -0.0715 -2.5409 0.0007 27 1 -0.4850 0.8401 -0.0004 28 1 2.9301 -3.8708 0.0132 29 1 1.8705 -6.3423 0.0035 30 1 2.1789 -8.1493 0.0042 31 1 -2.4032 -11.4002 -0.8721 32 1 -1.3421 -4.2497 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755201079.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:31 Heat of formation + Delta-G solvation = -86.105031 kcal Electronic energy + Delta-G solvation = -26387.739043 eV Core-core repulsion = 21709.107594 eV Total energy + Delta-G solvation = -4678.631449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.98071 -49.16424 -49.04601 -40.38515 -39.60955 -38.64532 -36.95823 -34.45244 -33.30361 -31.10650 -30.25547 -30.17427 -27.83881 -25.30241 -24.36076 -23.51679 -21.46833 -20.82317 -19.67015 -19.25082 -18.59030 -18.49544 -17.59587 -17.43234 -16.87693 -16.83125 -15.90607 -15.81730 -15.52879 -15.48497 -15.20920 -14.99036 -14.86969 -14.60352 -14.47187 -13.99151 -13.58668 -13.26759 -13.18721 -13.01891 -12.47626 -11.91995 -11.75625 -11.54707 -11.47409 -11.32729 -11.01929 -10.55238 -10.33899 -9.52508 -9.47840 -9.26715 -9.09733 -8.90333 -8.15080 -6.82142 -6.62991 -4.30384 -0.09871 0.20986 2.16527 2.75789 2.88847 3.01004 3.07587 3.17618 3.21090 3.45226 3.54940 3.64978 3.77900 3.86409 4.04337 4.26634 4.33671 4.72254 4.80717 4.95400 4.99153 5.08352 5.22757 5.42234 5.93981 6.15050 6.33351 6.74726 6.85859 6.89454 6.95407 7.13740 7.77163 7.96657 8.15718 8.46094 8.66647 9.28425 9.57379 10.32729 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.002602 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.850562 B =10757.292232 C =11702.762139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.081 4.081 11 C -0.066 4.066 12 N -0.607 5.607 13 C 0.537 3.463 14 O -0.511 6.511 15 C -0.121 4.121 16 C -0.078 4.078 17 C 0.070 3.930 18 F -0.117 7.117 19 C 0.087 3.913 20 F -0.110 7.110 21 C 0.059 3.941 22 O -0.467 6.467 23 C 0.156 3.844 24 F -0.090 7.090 25 C -0.027 4.027 26 N -0.260 5.260 27 H 0.276 0.724 28 H 0.147 0.853 29 H 0.397 0.603 30 H 0.164 0.836 31 H 0.400 0.600 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -18.783 -1.690 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.094 4.906 10 C -0.233 4.233 11 C -0.171 4.171 12 N -0.249 5.249 13 C 0.322 3.678 14 O -0.388 6.388 15 C -0.126 4.126 16 C -0.098 4.098 17 C 0.049 3.951 18 F -0.095 7.095 19 C 0.066 3.934 20 F -0.088 7.088 21 C 0.012 3.988 22 O -0.277 6.277 23 C 0.134 3.866 24 F -0.067 7.067 25 C -0.202 4.202 26 N -0.091 5.091 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.231 0.769 30 H 0.182 0.818 31 H 0.258 0.742 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.114 -17.061 -1.090 17.226 hybrid contribution 1.282 -0.841 -0.491 1.610 sum 3.396 -17.901 -1.581 18.289 Atomic orbital electron populations 1.70222 1.06166 1.28067 1.34806 1.25669 0.95733 1.00376 0.95410 0.85744 0.79626 0.80124 0.78546 1.18641 1.19856 1.19854 1.19960 0.91749 0.80471 1.53200 0.86418 1.44601 1.04111 1.03367 1.38538 1.21245 0.96835 0.85294 1.19887 1.17204 0.94541 0.80570 1.24815 1.42312 1.07722 1.04879 1.69985 1.17390 0.85237 0.84424 0.80738 1.90786 1.25098 1.73564 1.49362 1.20025 0.91579 0.95337 1.05628 1.21156 0.98166 0.92334 0.98128 1.17183 0.79555 0.90807 1.07515 1.91592 1.38901 1.85062 1.93981 1.17807 0.92158 0.78144 1.05302 1.91573 1.96391 1.27435 1.93433 1.17820 0.86105 0.87890 1.07022 1.84963 1.40849 1.67638 1.34283 1.17669 0.81168 0.88861 0.98918 1.91674 1.38041 1.84822 1.92191 1.24160 0.98046 0.90734 1.07301 1.78294 0.90053 1.14996 1.25734 0.91374 0.83509 0.76901 0.81841 0.74244 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.93 11.81 55.49 0.66 -20.27 16 2 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 3 Si 0.94 18.39 29.55 -169.99 -5.02 13.37 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.32 -8.23 10.25 -14.82 -0.15 -8.38 16 8 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.70 3.74 -11.41 -0.04 -3.74 16 10 C -0.08 -1.81 11.49 -16.39 -0.19 -2.00 16 11 C -0.07 -1.44 6.90 -83.86 -0.58 -2.02 16 12 N -0.61 -9.92 5.41 -10.93 -0.06 -9.98 16 13 C 0.54 8.94 7.73 -12.45 -0.10 8.84 16 14 O -0.51 -10.63 12.48 5.27 0.07 -10.57 16 15 C -0.12 -1.48 5.88 -104.93 -0.62 -2.09 16 16 C -0.08 -0.70 9.51 -39.11 -0.37 -1.08 16 17 C 0.07 0.64 7.29 -39.46 -0.29 0.36 16 18 F -0.12 -1.12 17.17 2.25 0.04 -1.08 16 19 C 0.09 0.85 7.32 -39.14 -0.29 0.56 16 20 F -0.11 -1.12 17.01 2.25 0.04 -1.08 16 21 C 0.06 0.60 6.71 -39.21 -0.26 0.34 16 22 O -0.47 -4.19 13.22 -19.80 -0.26 -4.46 16 23 C 0.16 1.91 7.29 -38.85 -0.28 1.63 16 24 F -0.09 -1.34 15.38 2.25 0.03 -1.30 16 25 C -0.03 -0.68 10.85 -17.03 -0.18 -0.87 16 26 N -0.26 -7.37 10.39 30.80 0.32 -7.05 16 27 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.15 2.67 8.06 -52.49 -0.42 2.24 16 29 H 0.40 4.66 6.85 -40.82 -0.28 4.38 16 30 H 0.16 1.04 6.40 -52.49 -0.34 0.71 16 31 H 0.40 1.56 9.06 45.56 0.41 1.97 16 32 H 0.18 4.47 5.91 -52.49 -0.31 4.16 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -33.82 306.61 -3.50 -37.32 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -0.48 Total: 7.88 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.40 Total: -3.66 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.87 Total: -41.04 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.20 Total: -15.02 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.11 Total: -3.46 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.82 -3.50 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755201079.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.785 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds