Wall clock time and date at job start Tue Mar 31 2020 15:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47106 * 299.99866 * 3 2 1 6 6 H 1.48507 * 109.47133 * 59.99793 * 3 2 1 7 7 C 1.38988 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.37315 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.36500 * 126.06664 * 180.32521 * 9 7 2 11 11 C 1.35691 * 107.50702 * 180.11699 * 10 9 7 12 12 N 1.40537 * 126.08862 * 179.83673 * 11 10 9 13 13 C 1.34777 * 120.00378 * 179.71703 * 12 11 10 14 14 O 1.21612 * 119.99642 * 0.02562 * 13 12 11 15 15 C 1.47568 * 119.99848 * 180.02562 * 13 12 11 16 16 C 1.39780 * 120.11454 * 359.97438 * 15 13 12 17 17 C 1.37964 * 119.96415 * 180.02562 * 16 15 13 18 18 F 1.35106 * 119.90033 * 180.02562 * 17 16 15 19 19 C 1.38833 * 120.20028 * 0.02562 * 17 16 15 20 20 F 1.35100 * 119.89130 * 180.02562 * 19 17 16 21 21 C 1.38836 * 120.22605 * 359.97438 * 19 17 16 22 22 O 1.36020 * 119.98953 * 180.27200 * 21 19 17 23 23 C 1.38655 * 120.03033 * 0.02562 * 21 19 17 24 24 F 1.35099 * 120.09643 * 179.97438 * 23 21 19 25 25 C 1.40669 * 107.83160 * 359.58365 * 11 10 9 26 26 N 1.30906 * 108.38391 * 0.25596 * 25 11 10 27 27 H 0.97005 * 119.99762 * 0.02562 * 1 2 3 28 28 H 1.07996 * 126.24759 * 359.97438 * 10 9 7 29 29 H 0.97005 * 119.99773 * 359.72571 * 12 11 10 30 30 H 1.08000 * 120.01670 * 359.97438 * 16 15 13 31 31 H 0.96697 * 114.00534 * 269.73690 * 22 21 19 32 32 H 1.07996 * 125.80970 * 180.26637 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8883 2.3964 -1.2125 6 1 1.8882 2.3965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3213 -2.3928 0.0005 10 6 1.8750 -3.6404 0.0073 11 6 0.8578 -4.5385 0.0020 12 7 0.9888 -5.9377 0.0028 13 6 -0.1104 -6.7176 0.0029 14 8 -1.2157 -6.2104 0.0017 15 6 0.0273 -8.1868 0.0043 16 6 1.2966 -8.7722 0.0051 17 6 1.4218 -10.1462 0.0059 18 9 2.6493 -10.7106 0.0072 19 6 0.2902 -10.9505 0.0054 20 9 0.4200 -12.2953 0.0067 21 6 -0.9745 -10.3777 0.0046 22 8 -2.0799 -11.1703 0.0097 23 6 -1.1113 -8.9979 0.0038 24 9 -2.3412 -8.4391 0.0025 25 6 -0.3514 -3.8197 0.0015 26 7 -0.0715 -2.5409 0.0007 27 1 -0.4850 0.8401 -0.0004 28 1 2.9301 -3.8708 0.0132 29 1 1.8705 -6.3423 0.0035 30 1 2.1789 -8.1493 0.0042 31 1 -2.4032 -11.4002 -0.8721 32 1 -1.3421 -4.2497 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755201079.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:30 Heat of formation + Delta-G solvation = -111.428290 kcal Electronic energy + Delta-G solvation = -26388.837142 eV Core-core repulsion = 21709.107594 eV Total energy + Delta-G solvation = -4679.729548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.77243 -50.19860 -49.83058 -41.85714 -40.90025 -39.89188 -37.85146 -36.04752 -35.04111 -32.41401 -31.85575 -31.03089 -29.52611 -26.97019 -25.53005 -24.41048 -22.99841 -22.33245 -21.31922 -20.28677 -19.57457 -19.43435 -18.98261 -18.55156 -17.90065 -17.70764 -17.38894 -16.93041 -16.85675 -16.60106 -16.30471 -16.04095 -15.89068 -15.77994 -15.66141 -15.24393 -15.07269 -14.85018 -14.72104 -14.11941 -13.49477 -13.32465 -13.30523 -12.96093 -12.83889 -12.78589 -12.26754 -12.01406 -11.93122 -11.05243 -11.00401 -10.79734 -10.31038 -10.10278 -9.96900 -8.55812 -8.46140 -6.23618 -0.99175 -0.58956 1.11118 1.36263 1.41884 1.60667 1.76406 1.77680 2.06001 2.06435 2.21188 2.56948 2.59622 2.78898 2.84879 3.02688 3.10753 3.24896 3.37866 4.01011 4.06024 4.22382 4.38135 4.46083 4.56431 4.60338 5.01047 5.05575 5.16749 5.28611 5.37029 5.96445 6.29011 6.37482 6.58277 6.73537 7.21230 7.46707 7.67696 8.53200 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.002602 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.850562 B =10757.292232 C =11702.762139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.239 1.239 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.351 4.351 8 H 0.144 0.856 9 N -0.168 5.168 10 C -0.072 4.072 11 C -0.049 4.049 12 N -0.597 5.597 13 C 0.541 3.459 14 O -0.557 6.557 15 C -0.129 4.129 16 C -0.053 4.053 17 C 0.082 3.918 18 F -0.113 7.113 19 C 0.097 3.903 20 F -0.110 7.110 21 C 0.074 3.926 22 O -0.477 6.477 23 C 0.139 3.861 24 F -0.112 7.112 25 C -0.056 4.056 26 N -0.311 5.311 27 H 0.276 0.724 28 H 0.194 0.806 29 H 0.422 0.578 30 H 0.196 0.804 31 H 0.422 0.578 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 -20.627 -1.782 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.161 1.161 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.482 4.482 8 H 0.161 0.839 9 N 0.064 4.936 10 C -0.222 4.222 11 C -0.155 4.155 12 N -0.242 5.242 13 C 0.328 3.672 14 O -0.436 6.436 15 C -0.133 4.133 16 C -0.072 4.072 17 C 0.061 3.939 18 F -0.091 7.091 19 C 0.075 3.925 20 F -0.088 7.088 21 C 0.026 3.974 22 O -0.290 6.290 23 C 0.117 3.883 24 F -0.090 7.090 25 C -0.231 4.231 26 N -0.143 5.143 27 H 0.086 0.914 28 H 0.211 0.789 29 H 0.261 0.739 30 H 0.213 0.787 31 H 0.284 0.716 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.281 -18.982 -1.198 19.739 hybrid contribution 0.282 -0.616 -0.472 0.825 sum 5.563 -19.598 -1.670 20.440 Atomic orbital electron populations 1.70405 1.08449 1.29019 1.37352 1.26877 0.96446 1.04380 0.94181 0.84541 0.79165 0.74473 0.78065 1.16144 1.19942 1.19985 1.20680 0.93029 0.80769 1.53747 0.83860 1.44879 1.03614 1.04949 1.40180 1.22038 0.98939 0.83930 1.17338 1.17230 0.92928 0.83077 1.22250 1.42144 1.09284 1.02610 1.70205 1.18001 0.84365 0.86172 0.78639 1.90776 1.27030 1.74959 1.50882 1.19536 0.93042 0.92334 1.08420 1.21287 0.97623 0.92536 0.95758 1.17061 0.79413 0.90624 1.06773 1.91617 1.38654 1.84982 1.93860 1.17828 0.92092 0.78127 1.04417 1.91585 1.96360 1.27521 1.93314 1.17608 0.86671 0.87004 1.06131 1.84913 1.40580 1.67132 1.36423 1.17926 0.80402 0.89813 1.00137 1.91617 1.39476 1.85317 1.92622 1.24199 0.99119 0.90977 1.08840 1.78185 0.92135 1.16550 1.27441 0.91448 0.78867 0.73855 0.78679 0.71621 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.99 11.81 21.66 0.26 -46.74 16 2 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 3 Si 1.02 37.69 29.55 68.60 2.03 39.72 16 4 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.35 -17.97 10.25 84.01 0.86 -17.11 16 8 H 0.14 6.27 7.83 -2.91 -0.02 6.25 16 9 N -0.17 -8.99 3.74 -190.01 -0.71 -9.70 16 10 C -0.07 -3.10 11.49 83.38 0.96 -2.14 16 11 C -0.05 -2.10 6.90 37.75 0.26 -1.84 16 12 N -0.60 -18.37 5.41 -306.73 -1.66 -20.03 16 13 C 0.54 17.60 7.73 86.70 0.67 18.27 16 14 O -0.56 -23.88 12.48 -4.07 -0.05 -23.93 16 15 C -0.13 -2.90 5.88 -20.07 -0.12 -3.02 16 16 C -0.05 -0.75 9.51 22.58 0.21 -0.54 16 17 C 0.08 1.20 7.29 22.35 0.16 1.36 16 18 F -0.11 -1.68 17.17 44.97 0.77 -0.91 16 19 C 0.10 1.58 7.32 22.56 0.17 1.75 16 20 F -0.11 -1.89 17.01 44.97 0.76 -1.13 16 21 C 0.07 1.34 6.71 22.51 0.15 1.49 16 22 O -0.48 -7.67 13.22 -93.77 -1.24 -8.91 16 23 C 0.14 3.27 7.29 22.75 0.17 3.44 16 24 F -0.11 -3.42 15.38 44.97 0.69 -2.72 16 25 C -0.06 -2.97 10.85 85.42 0.93 -2.04 16 26 N -0.31 -18.42 10.39 -56.46 -0.59 -19.00 16 27 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 28 H 0.19 6.25 8.06 -2.91 -0.02 6.22 16 29 H 0.42 8.30 6.85 -92.70 -0.63 7.66 16 30 H 0.20 1.47 6.40 -2.91 -0.02 1.45 16 31 H 0.42 2.44 9.06 -74.06 -0.67 1.77 16 32 H 0.17 8.98 5.91 -2.91 -0.02 8.96 16 Total: -1.00 -78.55 306.61 5.11 -73.44 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.04 Total: 20.19 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 4.89 Total: -0.28 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -2.70 Total: -95.46 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.29 Total: -32.84 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 2.23 Total: -4.77 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -78.55 5.11 -73.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755201079.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.988 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds