Wall clock time and date at job start Tue Mar 31 2020 15:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47165 * 240.00336 * 3 2 1 5 5 H 1.48499 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46988 * 119.99952 * 3 2 1 7 7 C 1.37876 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00117 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46922 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00523 * 270.00196 * 10 9 7 12 12 O 1.21288 * 119.99722 * 4.65416 * 11 10 9 13 13 C 1.50703 * 120.00366 * 184.65654 * 11 10 9 14 14 S 1.82841 * 110.31227 * 302.68787 * 13 11 10 15 15 C 1.82918 * 99.53796 * 217.12128 * 14 13 11 16 16 C 1.54493 * 104.97422 * 44.28930 * 15 14 13 17 17 S 1.82115 * 106.98445 * 313.62395 * 16 15 14 18 18 C 1.40034 * 119.99705 * 90.00386 * 10 9 7 19 19 C 1.38855 * 120.04467 * 111.22655 * 18 10 9 20 20 C 1.38117 * 119.95574 * 179.97438 * 19 18 10 21 21 C 1.38470 * 120.04063 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.95443 * 179.97438 * 21 20 19 23 23 C 1.38477 * 120.09440 * 0.27329 * 21 20 19 24 24 C 1.38111 * 120.04362 * 359.44824 * 23 21 20 25 25 H 0.96995 * 120.00225 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46859 * 60.00431 * 9 7 2 27 27 H 1.08995 * 109.47414 * 300.00492 * 9 7 2 28 28 H 1.08999 * 110.27890 * 64.89412 * 13 11 10 29 29 H 1.09002 * 110.33903 * 285.41873 * 15 14 13 30 30 H 1.08997 * 110.43141 * 163.21125 * 15 14 13 31 31 H 1.09006 * 109.95490 * 194.24010 * 16 15 14 32 32 H 1.09005 * 109.98680 * 73.02458 * 16 15 14 33 33 H 1.08000 * 120.02233 * 0.02562 * 19 18 10 34 34 H 1.07997 * 119.97445 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.97614 * 179.69858 * 23 21 20 36 36 H 1.08003 * 120.02519 * 180.25416 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6410 -4.1248 -1.1676 12 8 2.3137 -3.6108 -2.2163 13 6 3.5374 -5.3363 -1.1697 14 16 5.0447 -5.0123 -0.1867 15 6 6.2693 -5.9132 -1.2038 16 6 5.9395 -5.5255 -2.6624 17 16 4.1354 -5.6785 -2.8586 18 6 2.6579 -4.1448 1.2122 19 6 2.2771 -5.4236 1.5967 20 6 2.7273 -5.9468 2.7930 21 6 3.5574 -5.1969 3.6090 22 9 3.9964 -5.7102 4.7790 23 6 3.9334 -3.9190 3.2303 24 6 3.4900 -3.3943 2.0322 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.0047 -6.2011 -0.7744 29 1 6.1603 -6.9887 -1.0638 30 1 7.2812 -5.5992 -0.9478 31 1 6.4473 -6.2010 -3.3508 32 1 6.2488 -4.4979 -2.8538 33 1 1.6300 -6.0089 0.9603 34 1 2.4310 -6.9412 3.0925 35 1 4.5770 -3.3339 3.8705 36 1 3.7868 -2.3992 1.7353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761154237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:00 Heat of formation + Delta-G solvation = -30.823682 kcal Electronic energy + Delta-G solvation = -23498.516545 eV Core-core repulsion = 19922.415876 eV Total energy + Delta-G solvation = -3576.100669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.73348 -40.00651 -38.09654 -34.87289 -33.33973 -32.78443 -31.07078 -30.02831 -29.00850 -26.80979 -23.92671 -22.97477 -22.86437 -22.51390 -19.51397 -17.90890 -17.38121 -16.96313 -16.78623 -16.37604 -16.03039 -15.55832 -15.38988 -15.03626 -14.60448 -14.33305 -14.27985 -13.88375 -13.65199 -13.33400 -13.11647 -12.74995 -12.56788 -12.33059 -12.25831 -12.13796 -12.00453 -11.34113 -11.02479 -10.95580 -10.82730 -10.68017 -10.24641 -9.83414 -9.77996 -9.50881 -8.89740 -8.55883 -8.47519 -7.92363 -7.83964 -7.72398 -6.11809 -4.16789 0.95737 1.23016 1.32821 1.48766 1.71013 2.55406 3.18968 3.28916 3.33706 3.36863 3.51452 3.77971 4.24662 4.38273 4.42159 4.55607 4.63418 4.85842 5.00723 5.00887 5.07246 5.20821 5.23795 5.43110 5.45160 5.58590 5.90495 6.08476 6.24364 6.43471 6.67055 6.81060 7.07454 7.19381 7.33513 7.83024 8.09628 8.12212 8.63633 8.86658 9.48114 10.96768 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.006296 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.346743 B = 4446.264458 C = 6287.115440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.250 3.750 10 N -0.550 5.550 11 C 0.535 3.465 12 O -0.484 6.484 13 C -0.057 4.057 14 S -0.186 6.186 15 C -0.105 4.105 16 C -0.097 4.097 17 S -0.190 6.190 18 C 0.142 3.858 19 C -0.103 4.103 20 C -0.142 4.142 21 C 0.090 3.910 22 F -0.146 7.146 23 C -0.142 4.142 24 C -0.062 4.062 25 H 0.265 0.735 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.069 -14.381 2.786 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.133 3.867 10 N -0.279 5.279 11 C 0.317 3.683 12 O -0.356 6.356 13 C -0.299 4.299 14 S 0.042 5.958 15 C -0.255 4.255 16 C -0.247 4.247 17 S 0.037 5.963 18 C 0.048 3.952 19 C -0.123 4.123 20 C -0.162 4.162 21 C 0.071 3.929 22 F -0.125 7.125 23 C -0.162 4.162 24 C -0.082 4.082 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.157 0.843 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.256 -13.617 2.238 17.194 hybrid contribution 0.994 0.442 0.339 1.139 sum 11.250 -13.175 2.577 17.515 Atomic orbital electron populations 1.69908 1.06014 1.27340 1.49839 1.24903 0.94860 0.99199 0.94815 0.86563 0.79574 0.82639 0.78745 1.20049 1.21127 1.20133 1.21313 0.93358 0.90240 1.51836 0.92127 1.19502 0.86686 0.81543 0.98968 1.45831 1.45001 1.35462 1.01615 1.19168 0.81010 0.83478 0.84693 1.90775 1.55951 1.58730 1.30183 1.26107 1.00783 1.05225 0.97785 1.88188 1.00328 1.70704 1.36593 1.24633 1.02462 1.03981 0.94392 1.24450 0.94907 1.06942 0.98436 1.87249 1.03940 1.91547 1.13605 1.17727 0.95879 0.92718 0.88831 1.21128 0.99388 0.95619 0.96193 1.20796 0.99809 1.00661 0.94884 1.17648 0.98883 0.93370 0.83036 1.91464 1.88164 1.87165 1.45670 1.21005 1.02841 0.94305 0.98002 1.21380 0.93547 1.00809 0.92473 0.92508 0.93233 0.94378 0.84274 0.88145 0.85834 0.86308 0.87896 0.85357 0.84889 0.84775 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.33 8.78 -34.44 -0.30 -14.64 16 8 H 0.06 1.64 7.27 -52.49 -0.38 1.25 16 9 C 0.25 6.30 5.06 -5.20 -0.03 6.27 16 10 N -0.55 -11.39 2.51 -114.72 -0.29 -11.68 16 11 C 0.54 10.98 7.12 -10.99 -0.08 10.90 16 12 O -0.48 -11.88 15.60 5.55 0.09 -11.80 16 13 C -0.06 -0.89 2.98 36.01 0.11 -0.78 16 14 S -0.19 -2.57 18.97 -104.24 -1.98 -4.55 16 15 C -0.10 -0.99 7.04 37.94 0.27 -0.73 16 16 C -0.10 -1.01 6.84 37.94 0.26 -0.75 16 17 S -0.19 -2.82 21.50 -104.24 -2.24 -5.06 16 18 C 0.14 2.45 2.99 -83.65 -0.25 2.20 16 19 C -0.10 -1.47 8.23 -39.40 -0.32 -1.79 16 20 C -0.14 -1.80 10.02 -39.54 -0.40 -2.20 16 21 C 0.09 1.23 7.30 -39.41 -0.29 0.94 16 22 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 23 C -0.14 -2.02 10.02 -39.54 -0.40 -2.41 16 24 C -0.06 -1.04 8.68 -39.40 -0.34 -1.38 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 27 H 0.04 0.99 8.05 -51.93 -0.42 0.57 16 28 H 0.14 1.91 7.03 -51.93 -0.37 1.55 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.13 1.63 7.70 -52.49 -0.40 1.23 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.15 2.69 7.08 -52.48 -0.37 2.32 16 LS Contribution 332.12 15.07 5.01 5.01 Total: -1.00 -31.26 332.12 -9.53 -40.78 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.00 Total: 0.61 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.87 Total: -2.66 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.45 Total: -36.75 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -4.22 Total: -9.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.26 -9.53 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761154237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.961 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds