Wall clock time and date at job start Tue Mar 31 2020 15:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47165 * 240.00336 * 3 2 1 5 5 H 1.48499 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46988 * 119.99952 * 3 2 1 7 7 C 1.37876 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00117 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46922 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00523 * 270.00196 * 10 9 7 12 12 O 1.21288 * 119.99722 * 4.65416 * 11 10 9 13 13 C 1.50703 * 120.00366 * 184.65654 * 11 10 9 14 14 S 1.82841 * 110.31227 * 302.68787 * 13 11 10 15 15 C 1.82918 * 99.53796 * 217.12128 * 14 13 11 16 16 C 1.54493 * 104.97422 * 44.28930 * 15 14 13 17 17 S 1.82115 * 106.98445 * 313.62395 * 16 15 14 18 18 C 1.40034 * 119.99705 * 90.00386 * 10 9 7 19 19 C 1.38855 * 120.04467 * 111.22655 * 18 10 9 20 20 C 1.38117 * 119.95574 * 179.97438 * 19 18 10 21 21 C 1.38470 * 120.04063 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.95443 * 179.97438 * 21 20 19 23 23 C 1.38477 * 120.09440 * 0.27329 * 21 20 19 24 24 C 1.38111 * 120.04362 * 359.44824 * 23 21 20 25 25 H 0.96995 * 120.00225 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46859 * 60.00431 * 9 7 2 27 27 H 1.08995 * 109.47414 * 300.00492 * 9 7 2 28 28 H 1.08999 * 110.27890 * 64.89412 * 13 11 10 29 29 H 1.09002 * 110.33903 * 285.41873 * 15 14 13 30 30 H 1.08997 * 110.43141 * 163.21125 * 15 14 13 31 31 H 1.09006 * 109.95490 * 194.24010 * 16 15 14 32 32 H 1.09005 * 109.98680 * 73.02458 * 16 15 14 33 33 H 1.08000 * 120.02233 * 0.02562 * 19 18 10 34 34 H 1.07997 * 119.97445 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.97614 * 179.69858 * 23 21 20 36 36 H 1.08003 * 120.02519 * 180.25416 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6410 -4.1248 -1.1676 12 8 2.3137 -3.6108 -2.2163 13 6 3.5374 -5.3363 -1.1697 14 16 5.0447 -5.0123 -0.1867 15 6 6.2693 -5.9132 -1.2038 16 6 5.9395 -5.5255 -2.6624 17 16 4.1354 -5.6785 -2.8586 18 6 2.6579 -4.1448 1.2122 19 6 2.2771 -5.4236 1.5967 20 6 2.7273 -5.9468 2.7930 21 6 3.5574 -5.1969 3.6090 22 9 3.9964 -5.7102 4.7790 23 6 3.9334 -3.9190 3.2303 24 6 3.4900 -3.3943 2.0322 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.0047 -6.2011 -0.7744 29 1 6.1603 -6.9887 -1.0638 30 1 7.2812 -5.5992 -0.9478 31 1 6.4473 -6.2010 -3.3508 32 1 6.2488 -4.4979 -2.8538 33 1 1.6300 -6.0089 0.9603 34 1 2.4310 -6.9412 3.0925 35 1 4.5770 -3.3339 3.8705 36 1 3.7868 -2.3992 1.7353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761154237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:59 Heat of formation + Delta-G solvation = -48.078661 kcal Electronic energy + Delta-G solvation = -23499.264777 eV Core-core repulsion = 19922.415876 eV Total energy + Delta-G solvation = -3576.848901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.82195 -41.48716 -39.49390 -36.51961 -34.81252 -34.16468 -32.29295 -31.48029 -30.35417 -28.63056 -25.01685 -24.65909 -24.04884 -23.80128 -20.96944 -19.20247 -18.83210 -18.49450 -18.18414 -17.71596 -17.30175 -16.97387 -16.49444 -16.24414 -16.08339 -15.93631 -15.52930 -15.05437 -14.84639 -14.49261 -14.39441 -14.16836 -13.89083 -13.75158 -13.43282 -13.42925 -13.37282 -13.02333 -12.87441 -12.60299 -12.28269 -12.12497 -11.77758 -11.71329 -11.20860 -10.79244 -10.65837 -10.08439 -10.02548 -9.25117 -8.99846 -8.89588 -8.25178 -6.38181 -0.12413 0.05184 0.16835 0.33812 0.78619 1.36017 1.39810 1.46688 1.57985 1.67156 1.97996 2.37659 2.58511 3.05203 3.18772 3.30705 3.44158 3.71115 3.87611 3.93679 3.95607 4.27782 4.38687 4.43653 4.51491 4.62319 4.67712 4.95725 4.97043 5.08241 5.12542 5.20870 5.38765 5.52167 5.71540 5.87979 5.99234 6.50542 6.67508 7.07113 7.32104 8.82972 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.006296 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.346743 B = 4446.264458 C = 6287.115440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.268 3.732 10 N -0.551 5.551 11 C 0.528 3.472 12 O -0.541 6.541 13 C -0.041 4.041 14 S -0.216 6.216 15 C -0.086 4.086 16 C -0.081 4.081 17 S -0.244 6.244 18 C 0.116 3.884 19 C -0.098 4.098 20 C -0.125 4.125 21 C 0.096 3.904 22 F -0.140 7.140 23 C -0.137 4.137 24 C -0.075 4.075 25 H 0.268 0.732 26 H 0.008 0.992 27 H 0.025 0.975 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.748 -16.226 4.195 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.148 3.852 10 N -0.278 5.278 11 C 0.311 3.689 12 O -0.418 6.418 13 C -0.282 4.282 14 S 0.011 5.989 15 C -0.235 4.235 16 C -0.231 4.231 17 S -0.017 6.017 18 C 0.024 3.976 19 C -0.118 4.118 20 C -0.144 4.144 21 C 0.076 3.924 22 F -0.119 7.119 23 C -0.156 4.156 24 C -0.095 4.095 25 H 0.077 0.923 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.175 0.825 29 H 0.143 0.857 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.170 0.830 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.962 -15.497 3.693 20.538 hybrid contribution 0.249 0.937 -0.069 0.972 sum 13.211 -14.559 3.624 19.991 Atomic orbital electron populations 1.70025 1.07480 1.28281 1.50771 1.25767 0.95710 1.02761 0.94375 0.85556 0.78438 0.78389 0.79039 1.20323 1.20364 1.18422 1.21533 0.93182 0.91344 1.51435 0.92637 1.18905 0.87087 0.82994 0.96172 1.45606 1.44250 1.34462 1.03531 1.20001 0.80778 0.84441 0.83637 1.90731 1.58013 1.61056 1.31952 1.25805 1.01143 1.02587 0.98703 1.88270 1.00900 1.72272 1.37420 1.24796 1.01823 1.04762 0.92120 1.24563 0.90770 1.07665 1.00112 1.87404 1.08771 1.91090 1.14479 1.17910 0.97527 0.94271 0.87850 1.21220 0.99259 0.94310 0.96996 1.21088 0.98132 1.01747 0.93390 1.17685 0.98518 0.93046 0.83103 1.91487 1.88063 1.86982 1.45372 1.21090 1.02573 0.94878 0.97060 1.21147 0.94726 0.99938 0.93725 0.92334 0.97345 0.95726 0.82484 0.85662 0.82791 0.82525 0.88613 0.83961 0.81369 0.82971 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -30.48 8.78 25.60 0.22 -30.25 16 8 H 0.06 3.14 7.27 -2.91 -0.02 3.11 16 9 C 0.27 14.40 5.06 85.63 0.43 14.84 16 10 N -0.55 -23.92 2.51 -635.26 -1.59 -25.51 16 11 C 0.53 22.64 7.12 87.66 0.62 23.26 16 12 O -0.54 -28.34 15.60 -3.06 -0.05 -28.39 16 13 C -0.04 -1.27 2.98 71.24 0.21 -1.06 16 14 S -0.22 -5.60 18.97 -49.82 -0.95 -6.55 16 15 C -0.09 -1.28 7.04 72.49 0.51 -0.77 16 16 C -0.08 -1.45 6.84 72.49 0.50 -0.95 16 17 S -0.24 -7.10 21.50 -49.82 -1.07 -8.17 16 18 C 0.12 4.04 2.99 38.13 0.11 4.16 16 19 C -0.10 -2.65 8.23 22.39 0.18 -2.46 16 20 C -0.12 -2.75 10.02 22.30 0.22 -2.53 16 21 C 0.10 2.33 7.30 22.38 0.16 2.49 16 22 F -0.14 -3.30 17.27 44.97 0.78 -2.53 16 23 C -0.14 -3.67 10.02 22.30 0.22 -3.45 16 24 C -0.08 -2.53 8.68 22.39 0.19 -2.34 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.01 0.52 7.49 -2.39 -0.02 0.50 16 27 H 0.02 1.37 8.05 -2.39 -0.02 1.35 16 28 H 0.16 4.18 7.03 -2.39 -0.02 4.16 16 29 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.16 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.14 3.40 7.70 -2.91 -0.02 3.37 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 36 H 0.12 4.62 7.08 -2.91 -0.02 4.60 16 Total: -1.00 -72.97 332.12 4.60 -68.36 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.11 Total: 9.15 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 4.07 Total: 2.17 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.31 Total: -80.76 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.05 Total: -28.39 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -12.70 SS G_CDS: -2.02 Total: -14.72 kcal Total: -72.97 4.60 -68.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761154237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.285 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds