Wall clock time and date at job start Tue Mar 31 2020 16:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34904 * 119.99452 * 2 1 4 4 C 1.47076 * 119.99698 * 187.68512 * 3 2 1 5 5 C 1.39992 * 120.19289 * 242.18279 * 4 3 2 6 6 Cl 1.73595 * 120.09711 * 0.02562 * 5 4 3 7 7 C 1.38031 * 119.80085 * 179.76773 * 5 4 3 8 8 C 1.38374 * 120.19297 * 0.49377 * 7 5 4 9 9 C 1.38367 * 120.39105 * 359.78091 * 8 7 5 10 10 C 1.38025 * 120.19318 * 359.95947 * 9 8 7 11 11 Cl 1.73595 * 120.10332 * 179.97438 * 10 9 8 12 12 C 1.46331 * 120.00448 * 179.97438 * 2 1 3 13 13 O 1.21705 * 120.00500 * 186.26971 * 12 2 1 14 14 N 1.34774 * 119.99755 * 6.26783 * 12 2 1 15 15 C 1.46501 * 120.00012 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47383 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47490 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00048 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00640 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00619 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99529 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47036 * 90.00078 * 21 19 17 23 23 H 1.48497 * 109.47143 * 209.99943 * 21 19 17 24 24 H 1.48495 * 109.47210 * 329.99860 * 21 19 17 25 25 H 1.08997 * 109.47255 * 90.00261 * 1 2 3 26 26 H 1.09007 * 109.46650 * 210.00032 * 1 2 3 27 27 H 1.09004 * 109.47507 * 329.99811 * 1 2 3 28 28 H 1.07995 * 120.00256 * 7.41154 * 3 2 1 29 29 H 1.08002 * 119.90198 * 180.25551 * 7 5 4 30 30 H 1.08001 * 119.80202 * 179.76114 * 8 7 5 31 31 H 1.08004 * 119.91043 * 179.97438 * 9 8 7 32 32 H 0.97000 * 120.00524 * 0.02562 * 14 12 2 33 33 H 1.08996 * 109.47156 * 300.00417 * 15 14 12 34 34 H 1.09003 * 109.47222 * 60.00065 * 15 14 12 35 35 H 1.08996 * 109.47266 * 300.00290 * 16 15 14 36 36 H 1.09007 * 109.47056 * 60.00570 * 16 15 14 37 37 H 0.96993 * 119.99914 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1814 1.1684 0.0000 4 6 3.6423 1.1742 -0.1703 5 6 4.4677 1.6688 0.8464 6 17 3.7703 2.2776 2.3149 7 6 5.8379 1.6659 0.6800 8 6 6.3956 1.1855 -0.4918 9 6 5.5870 0.7001 -1.5042 10 6 4.2151 0.6905 -1.3526 11 17 3.2028 0.0815 -2.6247 12 6 2.2388 -1.2672 0.0006 13 8 3.4503 -1.2703 0.1157 14 7 1.5710 -2.4310 -0.1263 15 6 2.3036 -3.6996 -0.1263 16 6 1.3170 -4.8584 -0.2838 17 6 2.0706 -6.1633 -0.2845 18 1 3.1458 -6.1661 -0.1823 19 6 1.3876 -7.3539 -0.4155 20 7 2.0453 -8.4928 -0.4155 21 14 -0.4720 -7.3492 -0.5929 22 1 -0.8317 -7.2711 -2.0316 23 1 -1.0279 -8.5970 -0.0107 24 1 -1.0345 -6.1757 0.1224 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6482 2.0997 0.1206 29 1 6.4764 2.0433 1.4650 30 1 7.4683 1.1898 -0.6169 31 1 6.0305 0.3274 -2.4157 32 1 0.6053 -2.4286 -0.2184 33 1 3.0114 -3.7104 -0.9551 34 1 2.8438 -3.8073 0.8142 35 1 0.6088 -4.8477 0.5447 36 1 0.7771 -4.7506 -1.2247 37 1 1.5647 -9.3303 -0.5073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766618596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:16 Heat of formation + Delta-G solvation = -14.187705 kcal Electronic energy + Delta-G solvation = -22750.335395 eV Core-core repulsion = 19158.495914 eV Total energy + Delta-G solvation = -3591.839481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08131 -38.87240 -36.78002 -36.26343 -35.22762 -34.66666 -32.85917 -31.42224 -30.70221 -29.88232 -26.87630 -25.34324 -23.22664 -22.71742 -21.77001 -20.73862 -18.98725 -17.65969 -16.90007 -16.47090 -16.04608 -15.52090 -15.00822 -14.96968 -14.41900 -14.38221 -14.11106 -13.71930 -13.57654 -13.22512 -12.89703 -12.77278 -12.57360 -12.52946 -12.23829 -11.92992 -11.89529 -11.46966 -11.21412 -11.13223 -11.01684 -10.92850 -10.38499 -10.28191 -9.97032 -9.74189 -9.39586 -9.29158 -8.79986 -8.62894 -8.45449 -8.35757 -6.10971 -4.10913 0.68866 0.98445 1.46331 1.80010 2.26552 3.24924 3.32584 3.33769 3.38735 3.51475 3.65880 4.34733 4.37664 4.68329 4.81288 4.90246 5.00189 5.05403 5.22021 5.27445 5.34169 5.43471 5.50909 5.66312 5.86888 5.92444 6.07457 6.11847 6.15637 6.22496 6.30471 6.47503 6.57276 6.77720 7.15130 7.23950 7.67034 7.93549 8.43930 8.59423 8.93499 9.49278 11.02145 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003316 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.256769 B = 8442.867609 C = 8682.281029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.136 4.136 3 C -0.068 4.068 4 C -0.013 4.013 5 C -0.015 4.015 6 Cl -0.063 7.063 7 C -0.109 4.109 8 C -0.098 4.098 9 C -0.104 4.104 10 C 0.014 3.986 11 Cl -0.057 7.057 12 C 0.539 3.461 13 O -0.531 6.531 14 N -0.719 5.719 15 C 0.132 3.868 16 C -0.022 4.022 17 C -0.522 4.522 18 H 0.075 0.925 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.395 0.605 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.017 0.983 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 25.602 -0.295 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.139 4.139 3 C -0.087 4.087 4 C -0.015 4.015 5 C -0.042 4.042 6 Cl -0.034 7.034 7 C -0.128 4.128 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.013 4.013 11 Cl -0.028 7.028 12 C 0.326 3.674 13 O -0.410 6.410 14 N -0.369 5.369 15 C 0.010 3.990 16 C -0.060 4.060 17 C -0.560 4.560 18 H 0.093 0.907 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.229 0.771 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.974 25.339 -0.205 25.416 hybrid contribution -1.603 -0.347 -0.078 1.642 sum 0.370 24.991 -0.283 24.996 Atomic orbital electron populations 1.20858 0.90309 1.03497 1.03004 1.22095 0.96595 0.93236 1.02001 1.21891 0.91406 0.97649 0.97760 1.18373 0.93307 0.97820 0.92015 1.20750 0.92857 1.02423 0.88200 1.98360 1.84829 1.85913 1.34318 1.20953 0.92568 1.00662 0.98585 1.21017 1.00055 0.98157 0.92424 1.20981 0.91161 0.99736 1.00408 1.20731 0.91481 0.98911 0.90162 1.98378 1.68846 1.86155 1.49447 1.18106 0.87539 0.84127 0.77666 1.90844 1.13351 1.87173 1.49589 1.46272 1.10932 1.06845 1.72842 1.21479 0.95402 0.80559 1.01538 1.19791 0.95520 0.94006 0.96650 1.20913 0.95724 0.88468 1.50896 0.90655 1.24994 0.98386 0.95413 0.94444 1.69902 1.35973 0.97624 1.50200 0.86765 0.86065 0.77684 0.78647 1.20225 1.21259 1.19085 0.90238 0.91048 0.90780 0.84165 0.84660 0.84481 0.84602 0.77115 0.91961 0.91978 0.96068 0.96506 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.48 36.01 0.34 -0.75 16 2 C -0.14 -1.72 5.23 -102.55 -0.54 -2.25 16 3 C -0.07 -0.80 7.83 -37.18 -0.29 -1.09 16 4 C -0.01 -0.18 3.79 -105.00 -0.40 -0.58 16 5 C -0.02 -0.19 6.36 -39.00 -0.25 -0.44 16 6 Cl -0.06 -0.71 28.05 -51.86 -1.45 -2.16 16 7 C -0.11 -1.18 9.81 -39.61 -0.39 -1.57 16 8 C -0.10 -1.01 10.04 -39.48 -0.40 -1.41 16 9 C -0.10 -1.24 9.81 -39.61 -0.39 -1.63 16 10 C 0.01 0.19 4.54 -39.00 -0.18 0.02 16 11 Cl -0.06 -0.78 26.03 -51.86 -1.35 -2.13 16 12 C 0.54 8.88 6.39 -13.01 -0.08 8.80 16 13 O -0.53 -10.25 12.79 5.18 0.07 -10.18 16 14 N -0.72 -12.08 5.48 -61.73 -0.34 -12.41 16 15 C 0.13 2.73 5.61 -4.04 -0.02 2.71 16 16 C -0.02 -0.50 4.15 -27.89 -0.12 -0.62 16 17 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 18 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 21 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.64 6.95 -51.92 -0.36 0.28 16 27 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.39 5.63 6.71 -40.82 -0.27 5.36 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 36 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -32.64 342.19 -9.32 -41.96 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.37 Total: 1.92 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.14 Total: -11.92 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.44 Total: -39.07 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -2.80 Total: -4.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.64 -9.32 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766618596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.769 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds