Wall clock time and date at job start Tue Mar 31 2020 16:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34904 * 119.99452 * 2 1 4 4 C 1.47076 * 119.99698 * 187.68512 * 3 2 1 5 5 C 1.39992 * 120.19289 * 242.18279 * 4 3 2 6 6 Cl 1.73595 * 120.09711 * 0.02562 * 5 4 3 7 7 C 1.38031 * 119.80085 * 179.76773 * 5 4 3 8 8 C 1.38374 * 120.19297 * 0.49377 * 7 5 4 9 9 C 1.38367 * 120.39105 * 359.78091 * 8 7 5 10 10 C 1.38025 * 120.19318 * 359.95947 * 9 8 7 11 11 Cl 1.73595 * 120.10332 * 179.97438 * 10 9 8 12 12 C 1.46331 * 120.00448 * 179.97438 * 2 1 3 13 13 O 1.21705 * 120.00500 * 186.26971 * 12 2 1 14 14 N 1.34774 * 119.99755 * 6.26783 * 12 2 1 15 15 C 1.46501 * 120.00012 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47383 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47490 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00048 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00640 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00619 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99529 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47036 * 90.00078 * 21 19 17 23 23 H 1.48497 * 109.47143 * 209.99943 * 21 19 17 24 24 H 1.48495 * 109.47210 * 329.99860 * 21 19 17 25 25 H 1.08997 * 109.47255 * 90.00261 * 1 2 3 26 26 H 1.09007 * 109.46650 * 210.00032 * 1 2 3 27 27 H 1.09004 * 109.47507 * 329.99811 * 1 2 3 28 28 H 1.07995 * 120.00256 * 7.41154 * 3 2 1 29 29 H 1.08002 * 119.90198 * 180.25551 * 7 5 4 30 30 H 1.08001 * 119.80202 * 179.76114 * 8 7 5 31 31 H 1.08004 * 119.91043 * 179.97438 * 9 8 7 32 32 H 0.97000 * 120.00524 * 0.02562 * 14 12 2 33 33 H 1.08996 * 109.47156 * 300.00417 * 15 14 12 34 34 H 1.09003 * 109.47222 * 60.00065 * 15 14 12 35 35 H 1.08996 * 109.47266 * 300.00290 * 16 15 14 36 36 H 1.09007 * 109.47056 * 60.00570 * 16 15 14 37 37 H 0.96993 * 119.99914 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1814 1.1684 0.0000 4 6 3.6423 1.1742 -0.1703 5 6 4.4677 1.6688 0.8464 6 17 3.7703 2.2776 2.3149 7 6 5.8379 1.6659 0.6800 8 6 6.3956 1.1855 -0.4918 9 6 5.5870 0.7001 -1.5042 10 6 4.2151 0.6905 -1.3526 11 17 3.2028 0.0815 -2.6247 12 6 2.2388 -1.2672 0.0006 13 8 3.4503 -1.2703 0.1157 14 7 1.5710 -2.4310 -0.1263 15 6 2.3036 -3.6996 -0.1263 16 6 1.3170 -4.8584 -0.2838 17 6 2.0706 -6.1633 -0.2845 18 1 3.1458 -6.1661 -0.1823 19 6 1.3876 -7.3539 -0.4155 20 7 2.0453 -8.4928 -0.4155 21 14 -0.4720 -7.3492 -0.5929 22 1 -0.8317 -7.2711 -2.0316 23 1 -1.0279 -8.5970 -0.0107 24 1 -1.0345 -6.1757 0.1224 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6482 2.0997 0.1206 29 1 6.4764 2.0433 1.4650 30 1 7.4683 1.1898 -0.6169 31 1 6.0305 0.3274 -2.4157 32 1 0.6053 -2.4286 -0.2184 33 1 3.0114 -3.7104 -0.9551 34 1 2.8438 -3.8073 0.8142 35 1 0.6088 -4.8477 0.5447 36 1 0.7771 -4.7506 -1.2247 37 1 1.5647 -9.3303 -0.5073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766618596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:15 Heat of formation + Delta-G solvation = -33.742834 kcal Electronic energy + Delta-G solvation = -22751.183369 eV Core-core repulsion = 19158.495914 eV Total energy + Delta-G solvation = -3592.687455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18487 -39.93952 -37.70805 -37.19629 -36.72002 -35.75928 -34.81690 -32.62128 -31.59705 -31.43605 -27.68327 -27.10307 -24.39493 -23.64358 -23.01213 -22.37420 -20.24477 -18.97928 -18.60554 -17.43299 -17.04529 -16.81156 -16.38694 -16.26282 -16.02511 -15.31563 -15.27044 -14.96756 -14.88816 -14.57136 -14.18574 -13.82297 -13.67325 -13.41729 -13.25800 -13.22102 -13.00276 -12.77200 -12.73367 -12.18750 -12.16270 -12.04833 -11.93782 -11.84522 -11.77164 -11.52454 -10.95631 -10.79521 -10.36645 -9.97216 -9.65496 -9.31039 -8.30794 -6.37984 -0.23503 0.08316 0.52152 0.88063 1.32682 1.37988 1.40573 1.51822 2.29498 2.34988 2.36006 2.51903 3.04274 3.50625 3.78890 3.89014 4.02804 4.17801 4.24928 4.34753 4.42489 4.48081 4.54163 4.68376 4.73991 4.82371 4.92894 5.03640 5.13614 5.15154 5.25660 5.26832 5.39397 5.41561 5.46132 5.64487 5.66084 6.21536 6.63976 6.71632 7.26419 7.32098 8.86085 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003316 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.256769 B = 8442.867609 C = 8682.281029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.147 4.147 3 C -0.058 4.058 4 C -0.035 4.035 5 C -0.030 4.030 6 Cl -0.057 7.057 7 C -0.113 4.113 8 C -0.095 4.095 9 C -0.119 4.119 10 C -0.006 4.006 11 Cl -0.068 7.068 12 C 0.535 3.465 13 O -0.564 6.564 14 N -0.714 5.714 15 C 0.151 3.849 16 C -0.012 4.012 17 C -0.538 4.538 18 H 0.028 0.972 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.957 3.043 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.237 1.237 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.410 0.590 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 27.774 -0.063 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C -0.077 4.077 4 C -0.036 4.036 5 C -0.057 4.057 6 Cl -0.028 7.028 7 C -0.132 4.132 8 C -0.113 4.113 9 C -0.137 4.137 10 C -0.033 4.033 11 Cl -0.039 7.039 12 C 0.324 3.676 13 O -0.444 6.444 14 N -0.365 5.365 15 C 0.027 3.973 16 C -0.050 4.050 17 C -0.577 4.577 18 H 0.046 0.954 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.779 3.221 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.160 1.160 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.188 0.812 29 H 0.176 0.824 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.247 0.753 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.146 27.553 0.029 27.553 hybrid contribution -0.736 -0.985 -0.124 1.236 sum -0.882 26.568 -0.095 26.583 Atomic orbital electron populations 1.20934 0.87481 1.04776 1.04143 1.22081 0.98305 0.91121 1.03516 1.22263 0.90993 0.98580 0.95861 1.18632 0.94352 0.98394 0.92261 1.20970 0.93566 1.02720 0.88394 1.98356 1.84826 1.85794 1.33800 1.21331 0.92437 1.00053 0.99329 1.21414 1.01533 0.96740 0.91589 1.21293 0.91013 0.99966 1.01463 1.20957 0.92092 0.99873 0.90421 1.98360 1.69227 1.86431 1.49903 1.18756 0.87382 0.85058 0.76383 1.90827 1.15045 1.87758 1.50804 1.46032 1.11544 1.05616 1.73347 1.20933 0.94716 0.82032 0.99590 1.19639 0.95528 0.92007 0.97795 1.21234 0.94186 0.91374 1.50862 0.95408 1.26061 1.04732 0.94598 0.93766 1.70072 1.38642 0.98624 1.51695 0.85567 0.78317 0.78733 0.79461 1.18990 1.21151 1.15986 0.89069 0.90942 0.88355 0.81215 0.82387 0.81353 0.83625 0.75332 0.94084 0.94066 0.94605 0.94854 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.48 71.24 0.68 -1.07 16 2 C -0.15 -3.43 5.23 -18.52 -0.10 -3.53 16 3 C -0.06 -1.25 7.83 23.82 0.19 -1.07 16 4 C -0.03 -0.89 3.79 -20.11 -0.08 -0.96 16 5 C -0.03 -0.69 6.36 22.65 0.14 -0.55 16 6 Cl -0.06 -1.19 28.05 -2.72 -0.08 -1.26 16 7 C -0.11 -2.27 9.81 22.25 0.22 -2.05 16 8 C -0.09 -1.81 10.04 22.33 0.22 -1.58 16 9 C -0.12 -2.76 9.81 22.25 0.22 -2.54 16 10 C -0.01 -0.17 4.54 22.65 0.10 -0.07 16 11 Cl -0.07 -1.84 26.03 -2.72 -0.07 -1.91 16 12 C 0.54 17.25 6.39 86.35 0.55 17.81 16 13 O -0.56 -21.93 12.79 -4.36 -0.06 -21.98 16 14 N -0.71 -23.28 5.48 -467.44 -2.56 -25.84 16 15 C 0.15 6.33 5.61 86.38 0.48 6.81 16 16 C -0.01 -0.54 4.15 29.85 0.12 -0.42 16 17 C -0.54 -31.07 9.66 25.60 0.25 -30.82 16 18 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 19 C 0.01 0.32 5.47 84.65 0.46 0.78 16 20 N -0.95 -59.58 13.96 21.45 0.30 -59.29 16 21 Si 0.96 42.54 27.47 68.60 1.88 44.42 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.24 -9.36 6.54 99.48 0.65 -8.70 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.07 6.95 -2.38 -0.02 1.05 16 27 H 0.10 1.01 8.07 -2.38 -0.02 0.99 16 28 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.41 10.76 6.71 -92.71 -0.62 10.14 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 36 H 0.03 1.41 7.57 -2.38 -0.02 1.39 16 37 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -73.34 342.19 3.31 -70.02 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.43 Total: 15.10 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 3.47 Total: -19.25 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.26 Total: -85.13 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.98 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.42 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.15 Total: -3.17 kcal Total: -73.34 3.31 -70.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766618596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.280 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds