Wall clock time and date at job start Tue Mar 31 2020 14:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86805 * 119.99883 * 2 1 4 4 H 1.48499 * 109.47018 * 239.71944 * 3 2 1 5 5 H 1.48503 * 109.47213 * 359.71976 * 3 2 1 6 6 H 1.48496 * 109.47084 * 119.71921 * 3 2 1 7 7 C 1.38752 * 119.99927 * 179.71856 * 2 1 3 8 8 H 1.08004 * 119.99596 * 180.28208 * 7 2 1 9 9 O 1.34915 * 119.99943 * 0.28113 * 7 2 1 10 10 C 1.34314 * 116.99618 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00333 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99568 * 180.02562 * 10 9 7 13 13 H 1.08994 * 110.85864 * 62.33371 * 12 10 9 14 14 C 1.54627 * 110.96838 * 298.54052 * 12 10 9 15 15 C 1.51288 * 104.19597 * 217.08668 * 14 12 10 16 16 O 1.21287 * 124.94105 * 196.21847 * 15 14 12 17 17 N 1.34421 * 110.11388 * 16.25248 * 15 14 12 18 18 C 1.39964 * 124.34832 * 180.43025 * 17 15 14 19 19 C 1.38893 * 120.04616 * 353.99722 * 18 17 15 20 20 C 1.38112 * 119.98990 * 179.77023 * 19 18 17 21 21 C 1.38350 * 120.08337 * 0.50794 * 20 19 18 22 22 Cl 1.73604 * 119.95797 * 179.76754 * 21 20 19 23 23 C 1.38588 * 120.09101 * 359.74750 * 21 20 19 24 24 F 1.35102 * 119.99716 * 180.02562 * 23 21 20 25 25 C 1.38340 * 120.00862 * 359.97438 * 23 21 20 26 26 C 1.46766 * 111.29999 * 0.40857 * 17 15 14 27 27 H 0.96998 * 120.00200 * 179.97438 * 1 2 3 28 28 H 1.09002 * 110.48877 * 335.76479 * 14 12 10 29 29 H 1.08994 * 110.48649 * 98.40880 * 14 12 10 30 30 H 1.07999 * 120.00404 * 0.02562 * 19 18 17 31 31 H 1.08001 * 119.96088 * 180.27241 * 20 19 18 32 32 H 1.07998 * 120.03849 * 179.97438 * 25 23 21 33 33 H 1.09005 * 110.24310 * 223.97947 * 26 17 15 34 34 H 1.08998 * 110.24534 * 101.98876 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1073 1.6935 -1.2091 5 1 1.2834 2.7465 -0.0068 6 1 3.0970 1.6994 1.2159 7 6 2.0082 -1.2016 0.0059 8 1 3.0882 -1.2015 0.0105 9 8 1.3336 -2.3700 0.0059 10 6 2.0651 -3.4964 0.0123 11 8 3.2755 -3.4330 0.0173 12 6 1.3809 -4.8392 0.0122 13 1 0.7879 -4.9725 -0.8925 14 6 0.5087 -5.0159 1.2767 15 6 0.6736 -6.4752 1.6402 16 8 -0.0505 -7.0892 2.3949 17 7 1.7399 -6.9920 1.0055 18 6 2.1598 -8.3222 1.1214 19 6 1.5378 -9.1712 2.0277 20 6 1.9499 -10.4848 2.1378 21 6 2.9888 -10.9538 1.3537 22 17 3.5081 -12.6040 1.4991 23 6 3.6153 -10.1081 0.4521 24 9 4.6293 -10.5682 -0.3131 25 6 3.2018 -8.7932 0.3346 26 6 2.4070 -5.9824 0.1750 27 1 -0.4850 -0.8400 -0.0004 28 1 0.8720 -4.3786 2.0829 29 1 -0.5349 -4.7938 1.0543 30 1 0.7294 -8.8054 2.6434 31 1 1.4630 -11.1458 2.8396 32 1 3.6900 -8.1337 -0.3676 33 1 2.6612 -6.4026 -0.7982 34 1 3.3040 -5.6160 0.6743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766979351.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:24 Heat of formation + Delta-G solvation = -133.480917 kcal Electronic energy + Delta-G solvation = -24461.154748 eV Core-core repulsion = 20299.972855 eV Total energy + Delta-G solvation = -4161.181893 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.051 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.25748 -41.50495 -39.45437 -38.78368 -37.01179 -36.67971 -35.45762 -33.33390 -32.25588 -31.15784 -29.40942 -27.97669 -25.58691 -24.06965 -23.50224 -22.49988 -20.42460 -19.99693 -18.41009 -18.17505 -17.51735 -17.23263 -16.79557 -16.36822 -16.10000 -15.77201 -15.39729 -15.10986 -14.86647 -14.41688 -14.13379 -13.89462 -13.79109 -13.58030 -13.47515 -13.16992 -13.04555 -12.74749 -12.10152 -12.03695 -11.74808 -11.52372 -11.24010 -11.20454 -11.00295 -10.61166 -10.33325 -10.26623 -10.04245 -9.92844 -9.32001 -9.30370 -8.68868 -8.28324 -6.90337 -4.29210 0.55858 0.72082 1.73184 2.21393 2.33148 2.96314 3.17919 3.20735 3.32724 3.42546 3.57419 3.77768 4.01520 4.15348 4.27567 4.45141 4.61253 4.66486 4.73513 4.92979 5.03391 5.07235 5.24528 5.30751 5.43693 5.52144 5.65144 5.70511 5.79395 5.82168 5.99869 6.29643 6.50743 6.63722 7.43148 7.68905 8.21978 8.27807 8.85576 9.49861 10.53983 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002488 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.752843 B =11253.181958 C =11984.518048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.017 3.983 3 Si 1.098 2.902 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.465 4.465 8 H 0.090 0.910 9 O -0.226 6.226 10 C 0.405 3.595 11 O -0.545 6.545 12 C -0.083 4.083 13 H 0.121 0.879 14 C -0.139 4.139 15 C 0.526 3.474 16 O -0.504 6.504 17 N -0.559 5.559 18 C 0.211 3.789 19 C -0.159 4.159 20 C -0.051 4.051 21 C -0.106 4.106 22 Cl -0.056 7.056 23 C 0.141 3.859 24 F -0.124 7.124 25 C -0.187 4.187 26 C 0.108 3.892 27 H 0.282 0.718 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -18.700 1.634 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.921 3.079 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.540 4.540 8 H 0.108 0.892 9 O -0.133 6.133 10 C 0.250 3.750 11 O -0.442 6.442 12 C -0.102 4.102 13 H 0.139 0.861 14 C -0.178 4.178 15 C 0.316 3.684 16 O -0.379 6.379 17 N -0.282 5.282 18 C 0.115 3.885 19 C -0.179 4.179 20 C -0.070 4.070 21 C -0.134 4.134 22 Cl -0.027 7.027 23 C 0.121 3.879 24 F -0.102 7.102 25 C -0.209 4.209 26 C -0.014 4.014 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.188 0.812 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.114 0.886 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.490 -17.425 2.021 17.717 hybrid contribution 0.613 -1.970 -0.314 2.087 sum 3.102 -19.395 1.707 19.715 Atomic orbital electron populations 1.70571 1.06626 1.31652 1.41947 1.26654 0.96708 1.01222 0.94384 0.83083 0.74457 0.72948 0.77391 1.20599 1.19788 1.20599 1.22152 0.93868 0.80905 1.57116 0.89234 1.83571 1.40329 1.14044 1.75385 1.22175 0.86368 0.86109 0.80310 1.90590 1.15198 1.87495 1.50933 1.21597 0.96682 0.91296 1.00664 0.86136 1.22360 1.03918 0.92640 0.98928 1.21210 0.78618 0.89879 0.78666 1.90614 1.46336 1.65964 1.34997 1.45991 1.28770 1.07938 1.45463 1.17532 0.93449 0.83168 0.94313 1.21708 1.03376 0.92597 1.00213 1.20855 0.93662 0.95412 0.97073 1.20919 1.01878 0.87447 1.03182 1.98376 1.90165 1.16807 1.97357 1.16951 0.87671 0.91575 0.91752 1.91555 1.56602 1.88887 1.73149 1.20680 1.00967 0.94763 1.04473 1.22299 0.96431 0.86256 0.96398 0.90839 0.86213 0.85968 0.81220 0.83471 0.83146 0.88614 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.48 13.69 55.48 0.76 -23.72 16 2 C 0.02 0.44 5.49 -17.53 -0.10 0.35 16 3 Si 1.10 23.08 29.92 -169.99 -5.09 17.99 16 4 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.74 9.64 30.92 0.30 -12.44 16 8 H 0.09 2.51 6.86 -52.48 -0.36 2.15 16 9 O -0.23 -5.68 9.13 -20.70 -0.19 -5.86 16 10 C 0.40 8.49 7.13 36.01 0.26 8.74 16 11 O -0.54 -12.80 14.81 -19.05 -0.28 -13.08 16 12 C -0.08 -1.19 3.66 -90.14 -0.33 -1.52 16 13 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.14 -1.87 6.40 -26.74 -0.17 -2.04 16 15 C 0.53 7.19 7.92 -10.86 -0.09 7.10 16 16 O -0.50 -7.78 14.81 5.55 0.08 -7.70 16 17 N -0.56 -6.97 3.14 -112.26 -0.35 -7.32 16 18 C 0.21 2.50 6.60 -83.69 -0.55 1.95 16 19 C -0.16 -1.80 9.29 -39.39 -0.37 -2.17 16 20 C -0.05 -0.49 9.82 -39.59 -0.39 -0.88 16 21 C -0.11 -1.12 6.33 -39.41 -0.25 -1.37 16 22 Cl -0.06 -0.55 28.61 -51.86 -1.48 -2.04 16 23 C 0.14 1.58 7.27 -39.41 -0.29 1.29 16 24 F -0.12 -1.44 16.83 2.25 0.04 -1.40 16 25 C -0.19 -2.03 9.39 -39.33 -0.37 -2.40 16 26 C 0.11 1.34 5.82 -3.12 -0.02 1.32 16 27 H 0.28 7.86 7.97 -40.82 -0.33 7.53 16 28 H 0.12 1.73 7.89 -51.93 -0.41 1.32 16 29 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.17 2.10 5.25 -52.49 -0.28 1.82 16 31 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.15 1.42 6.74 -52.49 -0.35 1.07 16 33 H 0.10 0.97 7.23 -51.93 -0.38 0.59 16 34 H 0.11 1.47 7.06 -51.93 -0.37 1.10 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -31.07 320.37 -6.57 -37.64 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -2.53 Total: 2.72 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.36 Total: -2.07 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.41 Total: -31.04 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.39 Total: -26.65 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.09 Total: 17.99 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.07 -6.57 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766979351.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.836 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds