Wall clock time and date at job start Tue Mar 31 2020 14:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86805 * 119.99883 * 2 1 4 4 H 1.48499 * 109.47018 * 239.71944 * 3 2 1 5 5 H 1.48503 * 109.47213 * 359.71976 * 3 2 1 6 6 H 1.48496 * 109.47084 * 119.71921 * 3 2 1 7 7 C 1.38752 * 119.99927 * 179.71856 * 2 1 3 8 8 H 1.08004 * 119.99596 * 180.28208 * 7 2 1 9 9 O 1.34915 * 119.99943 * 0.28113 * 7 2 1 10 10 C 1.34314 * 116.99618 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00333 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99568 * 180.02562 * 10 9 7 13 13 H 1.08994 * 110.85864 * 62.33371 * 12 10 9 14 14 C 1.54627 * 110.96838 * 298.54052 * 12 10 9 15 15 C 1.51288 * 104.19597 * 217.08668 * 14 12 10 16 16 O 1.21287 * 124.94105 * 196.21847 * 15 14 12 17 17 N 1.34421 * 110.11388 * 16.25248 * 15 14 12 18 18 C 1.39964 * 124.34832 * 180.43025 * 17 15 14 19 19 C 1.38893 * 120.04616 * 353.99722 * 18 17 15 20 20 C 1.38112 * 119.98990 * 179.77023 * 19 18 17 21 21 C 1.38350 * 120.08337 * 0.50794 * 20 19 18 22 22 Cl 1.73604 * 119.95797 * 179.76754 * 21 20 19 23 23 C 1.38588 * 120.09101 * 359.74750 * 21 20 19 24 24 F 1.35102 * 119.99716 * 180.02562 * 23 21 20 25 25 C 1.38340 * 120.00862 * 359.97438 * 23 21 20 26 26 C 1.46766 * 111.29999 * 0.40857 * 17 15 14 27 27 H 0.96998 * 120.00200 * 179.97438 * 1 2 3 28 28 H 1.09002 * 110.48877 * 335.76479 * 14 12 10 29 29 H 1.08994 * 110.48649 * 98.40880 * 14 12 10 30 30 H 1.07999 * 120.00404 * 0.02562 * 19 18 17 31 31 H 1.08001 * 119.96088 * 180.27241 * 20 19 18 32 32 H 1.07998 * 120.03849 * 179.97438 * 25 23 21 33 33 H 1.09005 * 110.24310 * 223.97947 * 26 17 15 34 34 H 1.08998 * 110.24534 * 101.98876 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1073 1.6935 -1.2091 5 1 1.2834 2.7465 -0.0068 6 1 3.0970 1.6994 1.2159 7 6 2.0082 -1.2016 0.0059 8 1 3.0882 -1.2015 0.0105 9 8 1.3336 -2.3700 0.0059 10 6 2.0651 -3.4964 0.0123 11 8 3.2755 -3.4330 0.0173 12 6 1.3809 -4.8392 0.0122 13 1 0.7879 -4.9725 -0.8925 14 6 0.5087 -5.0159 1.2767 15 6 0.6736 -6.4752 1.6402 16 8 -0.0505 -7.0892 2.3949 17 7 1.7399 -6.9920 1.0055 18 6 2.1598 -8.3222 1.1214 19 6 1.5378 -9.1712 2.0277 20 6 1.9499 -10.4848 2.1378 21 6 2.9888 -10.9538 1.3537 22 17 3.5081 -12.6040 1.4991 23 6 3.6153 -10.1081 0.4521 24 9 4.6293 -10.5682 -0.3131 25 6 3.2018 -8.7932 0.3346 26 6 2.4070 -5.9824 0.1750 27 1 -0.4850 -0.8400 -0.0004 28 1 0.8720 -4.3786 2.0829 29 1 -0.5349 -4.7938 1.0543 30 1 0.7294 -8.8054 2.6434 31 1 1.4630 -11.1458 2.8396 32 1 3.6900 -8.1337 -0.3676 33 1 2.6612 -6.4026 -0.7982 34 1 3.3040 -5.6160 0.6743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766979351.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:23 Heat of formation + Delta-G solvation = -150.391441 kcal Electronic energy + Delta-G solvation = -24461.888043 eV Core-core repulsion = 20299.972855 eV Total energy + Delta-G solvation = -4161.915188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.051 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.13762 -42.60070 -41.09973 -39.79477 -38.19929 -37.65847 -37.13881 -34.53649 -34.14255 -32.01245 -30.40543 -29.08556 -27.33387 -25.45237 -24.42630 -23.62902 -21.75280 -21.19923 -20.14751 -19.38696 -18.85215 -18.20728 -17.76281 -17.50208 -17.30527 -16.97815 -16.81474 -16.56518 -16.14615 -15.57498 -15.30032 -15.17139 -14.99949 -14.79267 -14.53889 -14.36370 -14.02807 -13.79810 -13.24878 -13.16352 -12.94194 -12.91217 -12.63565 -12.49639 -12.32516 -12.05494 -11.92521 -11.88633 -11.31182 -11.19006 -10.92423 -10.66260 -10.15691 -9.20933 -8.99985 -6.41327 -0.33087 -0.11888 0.90470 1.16449 1.26508 1.31782 1.52109 1.68925 1.81834 2.09915 2.30386 2.52176 2.88954 2.94100 2.99495 3.14333 3.48160 3.52196 3.77584 3.83301 3.86973 4.17012 4.25588 4.37795 4.41909 4.48281 4.65638 4.71575 4.72855 4.78896 4.92310 5.10977 5.32639 5.58625 5.64394 6.18278 6.36070 6.62949 6.87255 7.57040 8.46651 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002488 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.752843 B =11253.181958 C =11984.518048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.023 4.023 3 Si 1.139 2.861 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.490 4.490 8 H 0.075 0.925 9 O -0.252 6.252 10 C 0.414 3.586 11 O -0.568 6.568 12 C -0.073 4.073 13 H 0.152 0.848 14 C -0.135 4.135 15 C 0.530 3.470 16 O -0.523 6.523 17 N -0.554 5.554 18 C 0.195 3.805 19 C -0.162 4.162 20 C -0.042 4.042 21 C -0.107 4.107 22 Cl -0.049 7.049 23 C 0.132 3.868 24 F -0.128 7.128 25 C -0.181 4.181 26 C 0.114 3.886 27 H 0.270 0.730 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.126 0.874 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -19.875 1.327 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.223 4.223 3 Si 0.956 3.044 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 O -0.160 6.160 10 C 0.261 3.739 11 O -0.465 6.465 12 C -0.092 4.092 13 H 0.170 0.830 14 C -0.174 4.174 15 C 0.320 3.680 16 O -0.400 6.400 17 N -0.276 5.276 18 C 0.100 3.900 19 C -0.183 4.183 20 C -0.061 4.061 21 C -0.135 4.135 22 Cl -0.020 7.020 23 C 0.112 3.888 24 F -0.106 7.106 25 C -0.202 4.202 26 C -0.007 4.007 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.179 0.821 31 H 0.189 0.811 32 H 0.182 0.818 33 H 0.144 0.856 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.956 -18.650 1.709 18.960 hybrid contribution 0.558 -1.837 -0.194 1.930 sum 3.514 -20.487 1.515 20.841 Atomic orbital electron populations 1.70682 1.07372 1.30922 1.44309 1.28199 0.96822 1.04297 0.92989 0.82631 0.73891 0.69316 0.78582 1.18913 1.19184 1.19085 1.22231 0.93415 0.82413 1.58514 0.90743 1.83613 1.40890 1.14547 1.77000 1.23430 0.86327 0.87195 0.76948 1.90575 1.16725 1.88162 1.51039 1.21663 0.97298 0.87715 1.02571 0.82997 1.22315 1.04525 0.92630 0.97968 1.21078 0.78767 0.89600 0.78509 1.90616 1.47205 1.66232 1.35922 1.45880 1.28285 1.08243 1.45158 1.17647 0.94273 0.82829 0.95215 1.21690 1.03244 0.93218 1.00110 1.21049 0.93096 0.95043 0.96893 1.21053 1.01799 0.87765 1.02912 1.98382 1.90101 1.16248 1.97304 1.17071 0.87834 0.91882 0.92061 1.91547 1.56806 1.88935 1.73304 1.20758 1.00376 0.94829 1.04231 1.22268 0.95017 0.85696 0.97755 0.92067 0.87460 0.84552 0.82140 0.81131 0.81780 0.85559 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.03 13.69 21.62 0.30 -50.74 16 2 C -0.02 -1.24 5.49 84.87 0.47 -0.77 16 3 Si 1.14 46.08 29.92 68.60 2.05 48.14 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.49 -27.36 9.64 67.94 0.66 -26.71 16 8 H 0.07 4.27 6.86 -2.91 -0.02 4.25 16 9 O -0.25 -12.83 9.13 14.89 0.14 -12.70 16 10 C 0.41 17.27 7.13 71.24 0.51 17.78 16 11 O -0.57 -26.67 14.81 20.78 0.31 -26.36 16 12 C -0.07 -1.99 3.66 -10.48 -0.04 -2.02 16 13 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 14 C -0.13 -3.49 6.40 30.59 0.20 -3.29 16 15 C 0.53 13.81 7.92 87.90 0.70 14.50 16 16 O -0.52 -15.66 14.81 -3.05 -0.05 -15.71 16 17 N -0.55 -12.79 3.14 -627.67 -1.97 -14.76 16 18 C 0.20 4.27 6.60 38.14 0.25 4.52 16 19 C -0.16 -3.42 9.29 22.40 0.21 -3.21 16 20 C -0.04 -0.73 9.82 22.27 0.22 -0.51 16 21 C -0.11 -2.04 6.33 22.38 0.14 -1.89 16 22 Cl -0.05 -0.88 28.61 -2.72 -0.08 -0.96 16 23 C 0.13 2.69 7.27 22.38 0.16 2.85 16 24 F -0.13 -2.74 16.83 44.97 0.76 -1.99 16 25 C -0.18 -3.52 9.39 22.43 0.21 -3.31 16 26 C 0.11 2.59 5.82 86.83 0.51 3.10 16 27 H 0.27 15.47 7.97 -92.71 -0.74 14.73 16 28 H 0.11 3.09 7.89 -2.39 -0.02 3.07 16 29 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.16 3.78 5.25 -2.91 -0.02 3.77 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.16 2.66 6.74 -2.91 -0.02 2.64 16 33 H 0.13 2.14 7.23 -2.38 -0.02 2.12 16 34 H 0.09 2.43 7.06 -2.39 -0.02 2.41 16 Total: -1.00 -67.75 320.37 6.85 -60.90 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.21 Total: 13.15 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 4.18 Total: 1.03 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -1.67 Total: -65.49 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: 0.40 Total: -54.77 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.76 Total: -1.99 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.05 Total: 48.14 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -67.75 6.85 -60.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766979351.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.494 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds