Wall clock time and date at job start Tue Mar 31 2020 14:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86801 * 119.99659 * 2 1 4 4 H 1.48500 * 109.46907 * 270.00221 * 3 2 1 5 5 H 1.48502 * 109.46974 * 29.99831 * 3 2 1 6 6 H 1.48497 * 109.46819 * 149.99893 * 3 2 1 7 7 C 1.38749 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99401 * 179.97438 * 7 2 1 9 9 O 1.34919 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.34318 * 116.99598 * 180.02562 * 9 7 2 11 11 O 1.21211 * 120.00215 * 359.71707 * 10 9 7 12 12 C 1.50698 * 119.99794 * 179.97438 * 10 9 7 13 13 H 1.09004 * 110.85924 * 303.78757 * 12 10 9 14 14 C 1.54629 * 110.96988 * 67.61902 * 12 10 9 15 15 C 1.51282 * 104.19454 * 142.91539 * 14 12 10 16 16 O 1.21288 * 124.94235 * 163.71354 * 15 14 12 17 17 N 1.34411 * 110.11818 * 343.74827 * 15 14 12 18 18 C 1.39969 * 124.35341 * 179.57089 * 17 15 14 19 19 C 1.38887 * 120.04331 * 353.96357 * 18 17 15 20 20 C 1.38112 * 119.99107 * 179.74075 * 19 18 17 21 21 C 1.38357 * 120.07774 * 0.51033 * 20 19 18 22 22 Cl 1.73605 * 119.95182 * 179.74223 * 21 20 19 23 23 C 1.38576 * 120.09412 * 359.76357 * 21 20 19 24 24 F 1.35103 * 119.99481 * 180.02562 * 23 21 20 25 25 C 1.38337 * 120.01001 * 359.97438 * 23 21 20 26 26 C 1.46767 * 111.29928 * 359.59136 * 17 15 14 27 27 H 0.96996 * 120.00353 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.48913 * 261.59482 * 14 12 10 29 29 H 1.09000 * 110.48996 * 24.23958 * 14 12 10 30 30 H 1.08000 * 120.00584 * 359.97438 * 19 18 17 31 31 H 1.07997 * 119.96319 * 180.25177 * 20 19 18 32 32 H 1.08001 * 120.04190 * 179.97438 * 25 23 21 33 33 H 1.09000 * 110.24568 * 258.01388 * 26 17 15 34 34 H 1.08998 * 110.24289 * 136.01812 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2015 0.0001 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2757 -3.4330 -0.0027 12 6 1.3811 -4.8392 0.0023 13 1 0.6999 -4.9273 0.8486 14 6 0.6406 -5.0836 -1.3330 15 6 0.8376 -6.5593 -1.6017 16 8 0.1911 -7.2139 -2.3920 17 7 1.8330 -7.0397 -0.8368 18 6 2.2590 -8.3729 -0.8406 19 6 1.5638 -9.3230 -1.5775 20 6 1.9883 -10.6372 -1.5847 21 6 3.0995 -11.0111 -0.8501 22 17 3.6263 -12.6653 -0.8562 23 6 3.7924 -10.0670 -0.1091 24 9 4.8775 -10.4342 0.6071 25 6 3.3737 -8.7486 -0.1034 26 6 2.4154 -5.9866 0.0034 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4197 -4.8531 -1.2290 29 1 1.0850 -4.4880 -2.1304 30 1 0.6936 -9.0334 -2.1478 31 1 1.4498 -11.3748 -2.1612 32 1 3.9131 -8.0125 0.4742 33 1 3.3592 -5.6442 -0.4211 34 1 2.5689 -6.3551 1.0176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766979352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:27 Heat of formation + Delta-G solvation = -128.049556 kcal Electronic energy + Delta-G solvation = -24410.359247 eV Core-core repulsion = 20249.412876 eV Total energy + Delta-G solvation = -4160.946371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.051 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.22042 -41.43533 -39.35268 -38.71507 -36.94901 -36.61359 -35.29364 -33.24787 -32.28184 -31.11220 -29.35998 -27.90379 -25.89895 -24.17339 -23.45278 -22.44462 -20.31361 -19.78201 -18.30624 -17.93698 -17.44771 -17.19625 -16.79729 -16.31323 -16.07607 -15.79546 -15.19769 -14.83885 -14.54642 -14.50815 -14.31156 -14.01793 -13.72196 -13.47990 -13.36167 -13.09104 -12.87701 -12.56217 -12.09027 -11.95612 -11.77262 -11.60193 -11.34933 -11.23446 -11.20526 -10.59457 -10.52516 -10.19957 -10.04695 -9.91986 -9.29173 -9.24924 -8.73366 -8.23381 -6.56990 -4.25659 0.60196 0.76123 1.76575 2.27755 2.39552 2.95256 3.10358 3.15833 3.21980 3.26224 3.63317 3.80558 4.03111 4.22412 4.31528 4.52098 4.67974 4.72292 4.78811 4.99319 5.06504 5.11651 5.31505 5.37872 5.51863 5.56543 5.70366 5.80358 5.83982 5.92205 6.05228 6.46217 6.56719 6.70151 7.23821 7.75401 7.76871 8.47633 8.91439 9.62110 10.60010 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030118 B = 0.002478 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.467738 B =11296.023100 C =12063.296244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.385 4.385 8 H 0.098 0.902 9 O -0.203 6.203 10 C 0.402 3.598 11 O -0.550 6.550 12 C -0.082 4.082 13 H 0.121 0.879 14 C -0.137 4.137 15 C 0.526 3.474 16 O -0.505 6.505 17 N -0.559 5.559 18 C 0.212 3.788 19 C -0.159 4.159 20 C -0.051 4.051 21 C -0.106 4.106 22 Cl -0.057 7.057 23 C 0.141 3.859 24 F -0.124 7.124 25 C -0.187 4.187 26 C 0.105 3.895 27 H 0.272 0.728 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.171 0.829 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -18.127 -0.692 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.160 4.160 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.461 4.461 8 H 0.116 0.884 9 O -0.109 6.109 10 C 0.248 3.752 11 O -0.448 6.448 12 C -0.102 4.102 13 H 0.139 0.861 14 C -0.177 4.177 15 C 0.316 3.684 16 O -0.381 6.381 17 N -0.281 5.281 18 C 0.116 3.884 19 C -0.179 4.179 20 C -0.070 4.070 21 C -0.135 4.135 22 Cl -0.028 7.028 23 C 0.120 3.880 24 F -0.102 7.102 25 C -0.209 4.209 26 C -0.016 4.016 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.188 0.812 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.125 0.875 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.237 -18.384 -1.088 18.551 hybrid contribution 0.756 0.633 0.287 1.027 sum 2.992 -17.750 -0.801 18.019 Atomic orbital electron populations 1.69978 1.06036 1.28049 1.45479 1.25365 0.95842 0.98975 0.95847 0.85658 0.79081 0.79543 0.78872 1.19760 1.20226 1.19005 1.21260 0.92461 0.79516 1.52874 0.88421 1.83853 1.39204 1.13236 1.74614 1.22333 0.86365 0.86589 0.79895 1.90584 1.15311 1.87654 1.51287 1.21581 0.97378 0.91187 1.00079 0.86130 1.22343 1.04972 0.91948 0.98439 1.21246 0.77928 0.90501 0.78679 1.90611 1.48199 1.64265 1.34984 1.46007 1.34505 1.06871 1.40753 1.17537 0.92723 0.83102 0.95046 1.21700 1.02933 0.91218 1.02060 1.20850 0.93475 0.96340 0.96373 1.20912 1.00445 0.86442 1.05688 1.98374 1.90122 1.16486 1.97819 1.16952 0.85613 0.91806 0.93604 1.91553 1.51261 1.91950 1.75462 1.20689 0.99292 0.95136 1.05738 1.22335 0.98054 0.85163 0.96050 0.91820 0.85836 0.86252 0.81236 0.83516 0.83114 0.87471 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.67 55.48 0.76 -22.80 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.47 9.64 30.92 0.30 -10.17 16 8 H 0.10 2.68 6.86 -52.49 -0.36 2.32 16 9 O -0.20 -5.17 9.75 -20.72 -0.20 -5.38 16 10 C 0.40 8.45 7.13 36.00 0.26 8.71 16 11 O -0.55 -12.77 14.74 -19.05 -0.28 -13.05 16 12 C -0.08 -1.21 3.66 -90.14 -0.33 -1.54 16 13 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.14 -1.88 6.41 -26.74 -0.17 -2.05 16 15 C 0.53 7.28 7.92 -10.86 -0.09 7.20 16 16 O -0.51 -7.89 14.82 5.55 0.08 -7.80 16 17 N -0.56 -7.05 3.14 -112.27 -0.35 -7.40 16 18 C 0.21 2.54 6.60 -83.69 -0.55 1.98 16 19 C -0.16 -1.81 9.28 -39.39 -0.37 -2.18 16 20 C -0.05 -0.50 9.82 -39.58 -0.39 -0.89 16 21 C -0.11 -1.13 6.33 -39.41 -0.25 -1.38 16 22 Cl -0.06 -0.57 28.61 -51.86 -1.48 -2.05 16 23 C 0.14 1.59 7.27 -39.42 -0.29 1.30 16 24 F -0.12 -1.46 16.83 2.25 0.04 -1.42 16 25 C -0.19 -2.05 9.38 -39.33 -0.37 -2.42 16 26 C 0.11 1.32 5.63 -3.12 -0.02 1.30 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.12 1.73 7.89 -51.93 -0.41 1.32 16 30 H 0.17 2.10 5.26 -52.49 -0.28 1.83 16 31 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.15 1.46 7.01 -52.49 -0.37 1.10 16 33 H 0.11 1.48 6.96 -51.93 -0.36 1.12 16 34 H 0.10 0.98 7.70 -51.93 -0.40 0.58 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -30.55 321.31 -6.56 -37.11 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -2.58 Total: 2.05 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.36 Total: 0.94 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 0.41 Total: -30.19 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.40 Total: -26.24 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.55 -6.56 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766979352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.941 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds