Wall clock time and date at job start Tue Mar 31 2020 14:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86801 * 119.99659 * 2 1 4 4 H 1.48500 * 109.46907 * 270.00221 * 3 2 1 5 5 H 1.48502 * 109.46974 * 29.99831 * 3 2 1 6 6 H 1.48497 * 109.46819 * 149.99893 * 3 2 1 7 7 C 1.38749 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99401 * 179.97438 * 7 2 1 9 9 O 1.34919 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.34318 * 116.99598 * 180.02562 * 9 7 2 11 11 O 1.21211 * 120.00215 * 359.71707 * 10 9 7 12 12 C 1.50698 * 119.99794 * 179.97438 * 10 9 7 13 13 H 1.09004 * 110.85924 * 303.78757 * 12 10 9 14 14 C 1.54629 * 110.96988 * 67.61902 * 12 10 9 15 15 C 1.51282 * 104.19454 * 142.91539 * 14 12 10 16 16 O 1.21288 * 124.94235 * 163.71354 * 15 14 12 17 17 N 1.34411 * 110.11818 * 343.74827 * 15 14 12 18 18 C 1.39969 * 124.35341 * 179.57089 * 17 15 14 19 19 C 1.38887 * 120.04331 * 353.96357 * 18 17 15 20 20 C 1.38112 * 119.99107 * 179.74075 * 19 18 17 21 21 C 1.38357 * 120.07774 * 0.51033 * 20 19 18 22 22 Cl 1.73605 * 119.95182 * 179.74223 * 21 20 19 23 23 C 1.38576 * 120.09412 * 359.76357 * 21 20 19 24 24 F 1.35103 * 119.99481 * 180.02562 * 23 21 20 25 25 C 1.38337 * 120.01001 * 359.97438 * 23 21 20 26 26 C 1.46767 * 111.29928 * 359.59136 * 17 15 14 27 27 H 0.96996 * 120.00353 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.48913 * 261.59482 * 14 12 10 29 29 H 1.09000 * 110.48996 * 24.23958 * 14 12 10 30 30 H 1.08000 * 120.00584 * 359.97438 * 19 18 17 31 31 H 1.07997 * 119.96319 * 180.25177 * 20 19 18 32 32 H 1.08001 * 120.04190 * 179.97438 * 25 23 21 33 33 H 1.09000 * 110.24568 * 258.01388 * 26 17 15 34 34 H 1.08998 * 110.24289 * 136.01812 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2015 0.0001 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2757 -3.4330 -0.0027 12 6 1.3811 -4.8392 0.0023 13 1 0.6999 -4.9273 0.8486 14 6 0.6406 -5.0836 -1.3330 15 6 0.8376 -6.5593 -1.6017 16 8 0.1911 -7.2139 -2.3920 17 7 1.8330 -7.0397 -0.8368 18 6 2.2590 -8.3729 -0.8406 19 6 1.5638 -9.3230 -1.5775 20 6 1.9883 -10.6372 -1.5847 21 6 3.0995 -11.0111 -0.8501 22 17 3.6263 -12.6653 -0.8562 23 6 3.7924 -10.0670 -0.1091 24 9 4.8775 -10.4342 0.6071 25 6 3.3737 -8.7486 -0.1034 26 6 2.4154 -5.9866 0.0034 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4197 -4.8531 -1.2290 29 1 1.0850 -4.4880 -2.1304 30 1 0.6936 -9.0334 -2.1478 31 1 1.4498 -11.3748 -2.1612 32 1 3.9131 -8.0125 0.4742 33 1 3.3592 -5.6442 -0.4211 34 1 2.5689 -6.3551 1.0176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766979352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:26 Heat of formation + Delta-G solvation = -144.492449 kcal Electronic energy + Delta-G solvation = -24411.072264 eV Core-core repulsion = 20249.412876 eV Total energy + Delta-G solvation = -4161.659389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.051 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.11382 -42.53688 -40.96514 -39.75324 -38.10162 -37.60682 -36.98938 -34.46148 -34.13972 -31.97819 -30.36978 -29.02809 -27.70178 -25.46211 -24.38707 -23.56017 -21.51256 -21.10858 -19.88249 -19.34849 -18.83570 -18.15384 -17.73340 -17.41436 -17.26087 -16.91291 -16.57051 -16.24773 -16.19332 -15.96819 -15.25782 -15.06667 -14.80821 -14.62655 -14.42314 -14.31571 -13.98616 -13.77569 -13.56111 -13.17282 -12.96251 -12.84490 -12.66313 -12.51385 -12.34045 -12.14817 -12.03101 -11.94901 -11.25013 -11.12870 -10.88990 -10.68226 -10.12829 -9.17258 -8.52974 -6.31866 -0.29816 -0.08974 0.92904 1.20984 1.27877 1.34247 1.40845 1.54099 1.60686 2.07695 2.33364 2.53505 2.92463 2.97308 3.04027 3.23427 3.54851 3.57167 3.82355 3.89995 3.94082 4.20262 4.34094 4.44703 4.46680 4.61933 4.70835 4.78860 4.82174 4.83468 4.95446 5.14813 5.20591 5.62342 5.68957 5.83290 6.63568 6.68443 6.93220 7.73816 8.66700 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030118 B = 0.002478 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.467738 B =11296.023100 C =12063.296244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.000 4.000 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.085 0.915 9 O -0.233 6.233 10 C 0.410 3.590 11 O -0.572 6.572 12 C -0.074 4.074 13 H 0.149 0.851 14 C -0.133 4.133 15 C 0.530 3.470 16 O -0.524 6.524 17 N -0.554 5.554 18 C 0.196 3.804 19 C -0.161 4.161 20 C -0.042 4.042 21 C -0.107 4.107 22 Cl -0.050 7.050 23 C 0.132 3.868 24 F -0.128 7.128 25 C -0.181 4.181 26 C 0.113 3.887 27 H 0.278 0.722 28 H 0.135 0.865 29 H 0.108 0.892 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -19.022 -0.386 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.201 4.201 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.103 0.897 9 O -0.141 6.141 10 C 0.257 3.743 11 O -0.470 6.470 12 C -0.093 4.093 13 H 0.166 0.834 14 C -0.173 4.173 15 C 0.321 3.679 16 O -0.401 6.401 17 N -0.276 5.276 18 C 0.101 3.899 19 C -0.182 4.182 20 C -0.061 4.061 21 C -0.136 4.136 22 Cl -0.021 7.021 23 C 0.111 3.889 24 F -0.106 7.106 25 C -0.202 4.202 26 C -0.009 4.009 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.126 0.874 30 H 0.179 0.821 31 H 0.189 0.811 32 H 0.181 0.819 33 H 0.113 0.887 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.561 -19.317 -0.776 19.501 hybrid contribution 0.726 0.710 0.178 1.031 sum 3.287 -18.607 -0.598 18.904 Atomic orbital electron populations 1.70053 1.07496 1.29362 1.46591 1.26420 0.96782 1.02163 0.94783 0.84695 0.77823 0.75021 0.79365 1.18772 1.18809 1.18709 1.21390 0.92198 0.80928 1.54736 0.89711 1.83877 1.40056 1.13963 1.76177 1.23483 0.86322 0.87589 0.76916 1.90564 1.16702 1.88285 1.51442 1.21632 0.98119 0.87868 1.01707 0.83359 1.22296 1.05511 0.92055 0.97455 1.21097 0.78066 0.90166 0.78580 1.90611 1.49108 1.64507 1.35883 1.45896 1.34051 1.07207 1.40396 1.17650 0.93477 0.82714 0.96050 1.21684 1.02729 0.91809 1.01966 1.21049 0.93028 0.96171 0.95835 1.21046 1.00425 0.86753 1.05344 1.98381 1.90065 1.15891 1.97767 1.17070 0.85736 0.92123 0.93953 1.91544 1.51496 1.91987 1.75620 1.20754 0.98824 0.95330 1.05315 1.22298 0.96528 0.84477 0.97565 0.91233 0.84658 0.87368 0.82085 0.81128 0.81922 0.88712 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.80 13.67 21.62 0.30 -49.50 16 2 C 0.00 -0.02 5.49 84.87 0.47 0.44 16 3 Si 1.01 40.86 29.55 68.60 2.03 42.88 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.42 -23.17 9.64 67.94 0.66 -22.52 16 8 H 0.09 4.78 6.86 -2.91 -0.02 4.76 16 9 O -0.23 -12.13 9.75 14.82 0.14 -11.99 16 10 C 0.41 17.27 7.13 71.24 0.51 17.78 16 11 O -0.57 -26.75 14.74 20.77 0.31 -26.45 16 12 C -0.07 -2.07 3.66 -10.48 -0.04 -2.11 16 13 H 0.15 3.42 8.14 -2.38 -0.02 3.40 16 14 C -0.13 -3.56 6.41 30.59 0.20 -3.37 16 15 C 0.53 14.11 7.92 87.90 0.70 14.80 16 16 O -0.52 -15.93 14.82 -3.05 -0.05 -15.98 16 17 N -0.55 -13.06 3.14 -627.70 -1.97 -15.03 16 18 C 0.20 4.36 6.60 38.13 0.25 4.61 16 19 C -0.16 -3.43 9.28 22.40 0.21 -3.22 16 20 C -0.04 -0.73 9.82 22.27 0.22 -0.52 16 21 C -0.11 -2.07 6.33 22.38 0.14 -1.93 16 22 Cl -0.05 -0.90 28.61 -2.72 -0.08 -0.98 16 23 C 0.13 2.74 7.27 22.37 0.16 2.90 16 24 F -0.13 -2.81 16.83 44.97 0.76 -2.06 16 25 C -0.18 -3.62 9.38 22.43 0.21 -3.41 16 26 C 0.11 2.62 5.63 86.83 0.49 3.10 16 27 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.11 3.17 7.89 -2.39 -0.02 3.15 16 30 H 0.16 3.80 5.26 -2.91 -0.02 3.79 16 31 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.16 2.79 7.01 -2.91 -0.02 2.77 16 33 H 0.09 2.51 6.96 -2.39 -0.02 2.49 16 34 H 0.13 2.20 7.70 -2.39 -0.02 2.18 16 Total: -1.00 -66.47 321.31 6.78 -59.69 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.18 Total: 12.84 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.17 Total: 6.57 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -1.67 Total: -64.53 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: 0.41 Total: -54.41 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.76 Total: -2.06 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -66.47 6.78 -59.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766979352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.800 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds