Wall clock time and date at job start Tue Mar 31 2020 14:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48497 * 109.47194 * 239.99662 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47444 * 119.99566 * 3 2 1 7 7 C 1.38814 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00222 * 148.63320 * 7 2 1 9 9 N 1.36936 * 119.99950 * 328.63739 * 7 2 1 10 10 C 1.46497 * 120.00038 * 155.14857 * 9 7 2 11 11 C 1.52996 * 117.49976 * 3.15378 * 10 9 7 12 12 C 1.53005 * 117.49886 * 294.48952 * 10 9 7 13 13 S 1.65601 * 120.00074 * 335.14326 * 9 7 2 14 14 O 1.42102 * 106.40281 * 336.46691 * 13 9 7 15 15 O 1.42100 * 106.40773 * 203.54202 * 13 9 7 16 16 C 1.76207 * 107.21660 * 89.99978 * 13 9 7 17 17 C 1.32567 * 119.99838 * 115.27809 * 16 13 9 18 18 C 1.47809 * 120.00093 * 179.72815 * 17 16 13 19 19 C 1.39562 * 120.13204 * 179.97438 * 18 17 16 20 20 C 1.37968 * 119.87960 * 179.97438 * 19 18 17 21 21 C 1.38343 * 120.15443 * 0.02562 * 20 19 18 22 22 C 1.38437 * 120.27744 * 359.97438 * 21 20 19 23 23 Cl 1.73593 * 119.94696 * 180.02562 * 22 21 20 24 24 C 1.38120 * 120.11258 * 359.76836 * 22 21 20 25 25 H 0.96997 * 119.99688 * 356.66320 * 1 2 3 26 26 H 1.09002 * 115.54711 * 148.82543 * 10 9 7 27 27 H 1.08994 * 117.50031 * 0.02562 * 11 10 9 28 28 H 1.08996 * 117.49956 * 145.02287 * 11 10 9 29 29 H 1.08994 * 117.50047 * 214.98086 * 12 10 9 30 30 H 1.09000 * 117.49828 * 359.97438 * 12 10 9 31 31 H 1.07993 * 120.00006 * 295.00333 * 16 13 9 32 32 H 1.08004 * 119.99635 * 359.72432 * 17 16 13 33 33 H 1.07998 * 120.06350 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.91857 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.86256 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.07915 * 180.25643 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9719 -1.2707 -0.4862 9 7 1.4757 -2.3012 0.6182 10 6 1.8736 -3.6458 0.1941 11 6 2.9445 -3.7557 -0.8930 12 6 1.4855 -4.0845 -1.2193 13 16 0.3795 -2.1103 1.8447 14 8 0.6059 -0.8167 2.3876 15 8 0.4345 -3.2993 2.6209 16 6 -1.2220 -2.0685 1.1111 17 6 -2.0973 -3.0284 1.3753 18 6 -3.4428 -2.9902 0.7646 19 6 -4.3663 -3.9996 1.0405 20 6 -5.6209 -3.9585 0.4681 21 6 -5.9649 -2.9198 -0.3785 22 6 -5.0539 -1.9152 -0.6566 23 17 -5.4948 -0.6155 -1.7196 24 6 -3.7966 -1.9423 -0.0855 25 1 -0.4849 0.8386 0.0489 26 1 1.8699 -4.4055 0.9757 27 1 3.3533 -2.8276 -1.2924 28 1 3.6452 -4.5880 -0.8269 29 1 1.2270 -5.1329 -1.3678 30 1 0.9337 -3.3728 -1.8335 31 1 -1.4920 -1.2586 0.4497 32 1 -1.8272 -3.8383 2.0367 33 1 -4.0996 -4.8110 1.7015 34 1 -6.3362 -4.7391 0.6814 35 1 -6.9482 -2.8926 -0.8244 36 1 -3.0877 -1.1561 -0.2996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768828391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:15 Heat of formation + Delta-G solvation = 8.432603 kcal Electronic energy + Delta-G solvation = -23433.806153 eV Core-core repulsion = 19844.991268 eV Total energy + Delta-G solvation = -3588.814885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.27514 -37.24646 -36.46558 -36.13674 -34.60660 -33.98291 -33.26510 -30.74942 -30.57407 -29.35429 -24.98480 -23.63583 -22.49115 -21.71592 -20.77550 -19.89886 -19.00348 -17.33820 -16.89791 -16.13078 -16.04013 -15.44397 -15.01057 -14.70165 -14.24547 -14.13650 -13.83290 -13.62592 -13.53836 -13.41076 -12.32739 -12.04387 -11.81362 -11.70594 -11.62758 -11.45271 -11.16476 -10.99501 -10.94350 -10.83011 -10.82415 -10.73680 -10.57167 -10.25764 -10.24636 -9.98618 -9.70889 -9.53914 -8.86204 -8.79306 -8.24927 -7.74749 -6.45837 -3.90662 0.77964 1.23659 1.76156 2.16108 2.45380 3.29606 3.39395 3.44848 3.80253 4.14132 4.48009 4.58624 4.70233 4.76990 4.89250 5.07923 5.17381 5.26217 5.37322 5.51821 5.64208 5.67105 5.78297 5.81802 5.90461 5.98784 6.19564 6.25873 6.27531 6.30716 6.38796 6.63546 6.75205 6.88505 6.92384 7.20033 7.33740 7.65336 8.36717 8.96511 9.37252 10.64399 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.004804 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.966119 B = 5826.719225 C = 6775.938101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.045 3.955 3 Si 0.932 3.068 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.321 4.321 8 H 0.097 0.903 9 N -0.830 5.830 10 C 0.081 3.919 11 C -0.174 4.174 12 C -0.205 4.205 13 S 2.703 3.297 14 O -0.950 6.950 15 O -1.012 7.012 16 C -0.661 4.661 17 C -0.040 4.040 18 C -0.045 4.045 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.036 4.036 23 Cl -0.073 7.073 24 C -0.089 4.089 25 H 0.277 0.723 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.201 0.799 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 -7.060 -1.750 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.158 4.158 3 Si 0.759 3.241 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.449 4.449 8 H 0.115 0.885 9 N -0.659 5.659 10 C -0.028 4.028 11 C -0.213 4.213 12 C -0.246 4.246 13 S 2.794 3.206 14 O -0.940 6.940 15 O -1.002 7.002 16 C -0.765 4.765 17 C -0.060 4.060 18 C -0.046 4.046 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.062 4.062 23 Cl -0.044 7.044 24 C -0.107 4.107 25 H 0.088 0.912 26 H 0.138 0.862 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.218 0.782 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.733 -6.689 -0.987 11.044 hybrid contribution -0.398 0.910 -0.959 1.381 sum -9.131 -5.778 -1.946 10.979 Atomic orbital electron populations 1.69644 1.06197 1.29262 1.48516 1.25042 0.95138 1.00247 0.95419 0.85914 0.79085 0.80786 0.78307 1.20671 1.21135 1.19754 1.18891 1.02118 0.85552 1.38342 0.88499 1.52831 1.54820 1.07352 1.50852 1.21538 1.03331 0.87163 0.90803 1.23061 0.91632 1.02861 1.03709 1.23323 0.98474 1.00676 1.02095 1.01184 0.73972 0.72337 0.73064 1.93480 1.84192 1.39611 1.76705 1.93432 1.87848 1.50297 1.68648 1.35406 1.22232 1.06399 1.12494 1.21859 0.91122 0.97283 0.95729 1.19253 0.94524 0.94213 0.96656 1.21457 0.93146 0.98228 0.99389 1.20995 0.96710 0.98163 0.97339 1.21078 0.99191 0.93747 0.99264 1.20849 0.95630 0.92119 0.97608 1.98367 1.92884 1.48747 1.64417 1.21533 0.94859 0.99070 0.95266 0.91223 0.86178 0.87673 0.89699 0.89918 0.88387 0.78222 0.85043 0.84991 0.85070 0.85191 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.97 8.48 55.49 0.47 -22.50 16 2 C 0.05 1.16 3.73 -17.43 -0.06 1.09 16 3 Si 0.93 21.40 29.65 -169.99 -5.04 16.35 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.32 -8.04 8.74 -15.06 -0.13 -8.17 16 8 H 0.10 2.33 6.18 -52.49 -0.32 2.00 16 9 N -0.83 -19.54 3.22 -53.43 -0.17 -19.71 16 10 C 0.08 1.61 6.31 -67.93 -0.43 1.18 16 11 C -0.17 -3.02 9.80 -26.69 -0.26 -3.29 16 12 C -0.21 -3.67 10.36 -26.69 -0.28 -3.94 16 13 S 2.70 64.33 5.14 -107.50 -0.55 63.78 16 14 O -0.95 -25.67 15.07 -57.17 -0.86 -26.53 16 15 O -1.01 -23.70 15.73 -57.17 -0.90 -24.60 16 16 C -0.66 -14.19 8.77 28.83 0.25 -13.93 16 17 C -0.04 -0.73 9.42 -37.58 -0.35 -1.08 16 18 C -0.04 -0.73 5.87 -105.02 -0.62 -1.34 16 19 C -0.10 -1.34 9.79 -39.19 -0.38 -1.73 16 20 C -0.11 -1.27 10.03 -39.64 -0.40 -1.66 16 21 C -0.11 -1.37 9.82 -39.47 -0.39 -1.76 16 22 C -0.04 -0.51 6.31 -39.55 -0.25 -0.76 16 23 Cl -0.07 -1.01 28.95 -51.86 -1.50 -2.51 16 24 C -0.09 -1.48 9.18 -39.16 -0.36 -1.84 16 25 H 0.28 6.95 8.32 -40.82 -0.34 6.61 16 26 H 0.12 2.25 7.47 -51.93 -0.39 1.86 16 27 H 0.11 1.95 6.18 -51.93 -0.32 1.63 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 31 H 0.20 4.52 3.70 -52.49 -0.19 4.33 16 32 H 0.13 2.22 7.21 -52.48 -0.38 1.84 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.15 2.71 6.17 -52.49 -0.32 2.39 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -28.83 329.52 -10.85 -39.68 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.60 Total: 8.30 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: -3.66 Total: -37.23 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.30 Total: -42.21 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.76 Total: -51.13 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.35 kcal Atomic # 16 Polarization: 64.33 SS G_CDS: -0.55 Total: 63.78 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.83 -10.85 -39.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768828391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.113 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds