Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48497 * 109.47194 * 239.99662 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47444 * 119.99566 * 3 2 1 7 7 C 1.38814 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00222 * 148.63320 * 7 2 1 9 9 N 1.36936 * 119.99950 * 328.63739 * 7 2 1 10 10 C 1.46497 * 120.00038 * 155.14857 * 9 7 2 11 11 C 1.52996 * 117.49976 * 3.15378 * 10 9 7 12 12 C 1.53005 * 117.49886 * 294.48952 * 10 9 7 13 13 S 1.65601 * 120.00074 * 335.14326 * 9 7 2 14 14 O 1.42102 * 106.40281 * 336.46691 * 13 9 7 15 15 O 1.42100 * 106.40773 * 203.54202 * 13 9 7 16 16 C 1.76207 * 107.21660 * 89.99978 * 13 9 7 17 17 C 1.32567 * 119.99838 * 115.27809 * 16 13 9 18 18 C 1.47809 * 120.00093 * 179.72815 * 17 16 13 19 19 C 1.39562 * 120.13204 * 179.97438 * 18 17 16 20 20 C 1.37968 * 119.87960 * 179.97438 * 19 18 17 21 21 C 1.38343 * 120.15443 * 0.02562 * 20 19 18 22 22 C 1.38437 * 120.27744 * 359.97438 * 21 20 19 23 23 Cl 1.73593 * 119.94696 * 180.02562 * 22 21 20 24 24 C 1.38120 * 120.11258 * 359.76836 * 22 21 20 25 25 H 0.96997 * 119.99688 * 356.66320 * 1 2 3 26 26 H 1.09002 * 115.54711 * 148.82543 * 10 9 7 27 27 H 1.08994 * 117.50031 * 0.02562 * 11 10 9 28 28 H 1.08996 * 117.49956 * 145.02287 * 11 10 9 29 29 H 1.08994 * 117.50047 * 214.98086 * 12 10 9 30 30 H 1.09000 * 117.49828 * 359.97438 * 12 10 9 31 31 H 1.07993 * 120.00006 * 295.00333 * 16 13 9 32 32 H 1.08004 * 119.99635 * 359.72432 * 17 16 13 33 33 H 1.07998 * 120.06350 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.91857 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.86256 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.07915 * 180.25643 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9719 -1.2707 -0.4862 9 7 1.4757 -2.3012 0.6182 10 6 1.8736 -3.6458 0.1941 11 6 2.9445 -3.7557 -0.8930 12 6 1.4855 -4.0845 -1.2193 13 16 0.3795 -2.1103 1.8447 14 8 0.6059 -0.8167 2.3876 15 8 0.4345 -3.2993 2.6209 16 6 -1.2220 -2.0685 1.1111 17 6 -2.0973 -3.0284 1.3753 18 6 -3.4428 -2.9902 0.7646 19 6 -4.3663 -3.9996 1.0405 20 6 -5.6209 -3.9585 0.4681 21 6 -5.9649 -2.9198 -0.3785 22 6 -5.0539 -1.9152 -0.6566 23 17 -5.4948 -0.6155 -1.7196 24 6 -3.7966 -1.9423 -0.0855 25 1 -0.4849 0.8386 0.0489 26 1 1.8699 -4.4055 0.9757 27 1 3.3533 -2.8276 -1.2924 28 1 3.6452 -4.5880 -0.8269 29 1 1.2270 -5.1329 -1.3678 30 1 0.9337 -3.3728 -1.8335 31 1 -1.4920 -1.2586 0.4497 32 1 -1.8272 -3.8383 2.0367 33 1 -4.0996 -4.8110 1.7015 34 1 -6.3362 -4.7391 0.6814 35 1 -6.9482 -2.8926 -0.8244 36 1 -3.0877 -1.1561 -0.2996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768828391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = -7.802753 kcal Electronic energy + Delta-G solvation = -23434.510171 eV Core-core repulsion = 19844.991268 eV Total energy + Delta-G solvation = -3589.518902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.37172 -38.83015 -38.01686 -37.54446 -36.50394 -35.37001 -34.99157 -32.36666 -31.81092 -30.61039 -26.83202 -24.90220 -23.57773 -23.14164 -22.33299 -21.31848 -20.76972 -18.88725 -18.41162 -17.71121 -17.58558 -16.80934 -16.48417 -16.20575 -15.95830 -15.62148 -15.36843 -14.88002 -14.66896 -14.64317 -14.11580 -13.65538 -13.38145 -13.15970 -12.89978 -12.85455 -12.83314 -12.69582 -12.54874 -12.50492 -12.31612 -12.27179 -12.03275 -11.93110 -11.76801 -11.49086 -11.36603 -11.04081 -10.64517 -9.88258 -9.57450 -9.45205 -8.35834 -5.82923 -0.47494 0.02146 0.17020 1.08185 1.11360 1.43153 1.53767 1.57835 2.32840 2.63889 2.73879 2.92444 3.07681 3.37005 3.65559 3.76533 4.00251 4.09400 4.12390 4.18137 4.26136 4.34166 4.36160 4.39779 4.65615 4.68004 4.86998 4.91682 5.09942 5.19031 5.21289 5.26839 5.39267 5.49187 5.59673 5.68229 5.75140 5.86608 6.43553 7.11871 7.46164 8.70848 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.004804 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.966119 B = 5826.719225 C = 6775.938101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.326 4.326 8 H 0.102 0.898 9 N -0.845 5.845 10 C 0.048 3.952 11 C -0.158 4.158 12 C -0.192 4.192 13 S 2.702 3.298 14 O -0.996 6.996 15 O -1.018 7.018 16 C -0.697 4.697 17 C -0.004 4.004 18 C -0.079 4.079 19 C -0.091 4.091 20 C -0.101 4.101 21 C -0.099 4.099 22 C -0.051 4.051 23 Cl -0.075 7.075 24 C -0.108 4.108 25 H 0.271 0.729 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.186 0.814 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 -9.870 -2.285 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.454 4.454 8 H 0.119 0.881 9 N -0.674 5.674 10 C -0.060 4.060 11 C -0.197 4.197 12 C -0.232 4.232 13 S 2.799 3.201 14 O -0.986 6.986 15 O -1.009 7.009 16 C -0.806 4.806 17 C -0.025 4.025 18 C -0.081 4.081 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.077 4.077 23 Cl -0.046 7.046 24 C -0.127 4.127 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.108 0.892 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.203 0.797 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.196 0.804 35 H 0.179 0.821 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.559 -9.511 -1.524 14.292 hybrid contribution -0.012 1.632 -0.793 1.814 sum -10.571 -7.880 -2.317 13.387 Atomic orbital electron populations 1.69789 1.06672 1.28977 1.49126 1.25709 0.95867 1.02363 0.96141 0.85353 0.78330 0.78551 0.78440 1.18503 1.21438 1.20988 1.19077 1.02398 0.86494 1.37479 0.88065 1.52634 1.55946 1.08477 1.50296 1.21820 1.06061 0.85813 0.92276 1.23155 0.91884 1.03455 1.01176 1.23301 0.98579 1.01841 0.99511 1.00831 0.74798 0.71394 0.73123 1.93406 1.85338 1.41769 1.78114 1.93395 1.88294 1.49888 1.69295 1.34729 1.21632 1.08576 1.15613 1.22206 0.91535 0.95504 0.93206 1.19240 0.94358 0.96117 0.98406 1.21845 0.92945 0.97356 0.98776 1.21525 0.96533 0.98410 0.95389 1.21550 0.99666 0.92396 0.98085 1.20989 0.95495 0.93153 0.98079 1.98362 1.92711 1.49115 1.64446 1.21406 0.95581 0.98992 0.96712 0.91930 0.85086 0.89188 0.85974 0.86511 0.90890 0.79692 0.83424 0.82021 0.80416 0.82092 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.94 8.48 21.65 0.18 -48.76 16 2 C 0.00 0.03 3.73 84.86 0.32 0.34 16 3 Si 0.97 44.94 29.65 68.60 2.03 46.97 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.33 -16.82 8.74 84.03 0.73 -16.09 16 8 H 0.10 4.97 6.18 -2.91 -0.02 4.96 16 9 N -0.84 -40.82 3.22 -322.95 -1.04 -41.86 16 10 C 0.05 1.90 6.31 44.99 0.28 2.19 16 11 C -0.16 -5.25 9.80 30.62 0.30 -4.95 16 12 C -0.19 -6.63 10.36 30.62 0.32 -6.31 16 13 S 2.70 133.59 5.14 -56.49 -0.29 133.30 16 14 O -1.00 -56.77 15.07 -128.00 -1.93 -58.70 16 15 O -1.02 -48.45 15.73 -128.00 -2.01 -50.47 16 16 C -0.70 -31.24 8.77 66.67 0.58 -30.65 16 17 C 0.00 -0.16 9.42 23.65 0.22 0.07 16 18 C -0.08 -2.49 5.87 -20.12 -0.12 -2.61 16 19 C -0.09 -2.00 9.79 22.53 0.22 -1.78 16 20 C -0.10 -1.71 10.03 22.23 0.22 -1.49 16 21 C -0.10 -1.98 9.82 22.34 0.22 -1.76 16 22 C -0.05 -1.40 6.31 22.29 0.14 -1.26 16 23 Cl -0.08 -2.04 28.95 -2.72 -0.08 -2.12 16 24 C -0.11 -3.65 9.18 22.55 0.21 -3.44 16 25 H 0.27 14.46 8.32 -92.71 -0.77 13.69 16 26 H 0.13 4.79 7.47 -2.39 -0.02 4.77 16 27 H 0.09 3.29 6.18 -2.39 -0.01 3.27 16 28 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.19 8.99 3.70 -2.91 -0.01 8.98 16 32 H 0.15 4.81 7.21 -2.91 -0.02 4.79 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.12 4.63 6.17 -2.91 -0.02 4.62 16 Total: -1.00 -66.49 329.52 1.64 -64.85 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 1.12 Total: 24.54 kcal Atomic # 6 Polarization: -71.40 SS G_CDS: 3.65 Total: -67.75 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -0.86 Total: -90.62 kcal Atomic # 8 Polarization: -105.23 SS G_CDS: -3.94 Total: -109.17 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 133.59 SS G_CDS: -0.29 Total: 133.30 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.12 kcal Total: -66.49 1.64 -64.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768828391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.042 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds