Wall clock time and date at job start Tue Mar 31 2020 15:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48504 * 109.47259 * 269.99585 * 3 2 1 5 5 H 1.48503 * 109.47023 * 29.99824 * 3 2 1 6 6 H 1.48501 * 109.47330 * 149.99347 * 3 2 1 7 7 C 1.37874 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99836 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00165 * 179.73258 * 7 2 1 10 10 N 1.46504 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99886 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00294 * 354.98657 * 11 10 9 13 13 C 1.50700 * 119.99873 * 174.98490 * 11 10 9 14 14 C 1.50710 * 112.84749 * 303.82690 * 13 11 10 15 15 C 1.38272 * 119.97455 * 113.56721 * 14 13 11 16 16 C 1.38207 * 120.03115 * 179.72859 * 15 14 13 17 17 C 1.38346 * 120.00147 * 0.54227 * 16 15 14 18 18 Cl 1.73601 * 120.01838 * 179.75330 * 17 16 15 19 19 C 1.38445 * 119.96293 * 359.72561 * 17 16 15 20 20 Cl 1.73595 * 120.02112 * 180.02562 * 19 17 16 21 21 C 1.38200 * 119.98406 * 293.83397 * 14 13 11 22 22 C 1.53776 * 113.61666 * 172.63671 * 13 11 10 23 23 C 1.54056 * 86.98464 * 270.83443 * 22 13 11 24 24 C 1.53781 * 87.07596 * 334.56685 * 23 22 13 25 25 H 0.97004 * 120.00007 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46518 * 299.99330 * 9 7 2 27 27 H 1.08994 * 109.47700 * 59.99941 * 9 7 2 28 28 H 0.97000 * 119.99865 * 359.97438 * 10 9 7 29 29 H 1.07988 * 119.98367 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.99842 * 180.29980 * 16 15 14 31 31 H 1.08003 * 119.99719 * 0.03174 * 21 14 13 32 32 H 1.08998 * 113.61551 * 25.42368 * 22 13 11 33 33 H 1.08999 * 113.61979 * 156.33644 * 22 13 11 34 34 H 1.08996 * 113.62208 * 220.01935 * 23 22 13 35 35 H 1.08999 * 113.68679 * 89.12077 * 23 22 13 36 36 H 1.08999 * 113.61641 * 270.87663 * 24 23 22 37 37 H 1.09001 * 113.69206 * 139.98550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 -0.0056 10 7 3.9999 -2.5753 -0.0031 11 6 5.3249 -2.8215 -0.0082 12 8 6.1118 -1.9040 -0.1065 13 6 5.8287 -4.2370 0.1085 14 6 5.3193 -4.9398 1.3406 15 6 4.4559 -6.0127 1.2167 16 6 3.9925 -6.6615 2.3456 17 6 4.3836 -6.2306 3.6007 18 17 3.7968 -7.0413 5.0192 19 6 5.2438 -5.1529 3.7248 20 17 5.7360 -4.6113 5.2990 21 6 5.7111 -4.5081 2.5936 22 6 7.3476 -4.3689 -0.0922 23 6 7.0521 -4.5414 -1.5943 24 6 5.6637 -5.0580 -1.1814 25 1 -0.4850 0.8401 -0.0004 26 1 3.8711 -0.6828 -0.8985 27 1 3.8785 -0.6778 0.8814 28 1 3.3695 -3.3125 0.0022 29 1 4.1467 -6.3463 0.2373 30 1 3.3220 -7.5025 2.2481 31 1 6.3817 -3.6669 2.6897 32 1 7.8998 -3.4593 0.1439 33 1 7.7741 -5.2572 0.3736 34 1 7.6727 -5.2958 -2.0776 35 1 7.0221 -3.6015 -2.1454 36 1 5.6307 -6.1343 -1.0128 37 1 4.8565 -4.7051 -1.8232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787619694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:20 Heat of formation + Delta-G solvation = -11.825429 kcal Electronic energy + Delta-G solvation = -23057.449492 eV Core-core repulsion = 19465.712447 eV Total energy + Delta-G solvation = -3591.737045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01342 -39.00945 -37.26940 -36.65196 -36.42788 -34.37894 -32.41718 -31.41092 -30.98336 -28.31191 -26.09721 -25.78755 -23.10114 -22.56473 -21.96234 -20.79628 -19.04338 -17.90080 -17.02439 -16.36155 -16.04986 -15.75316 -15.23917 -15.15285 -14.66183 -14.25849 -14.14874 -13.95543 -13.83943 -13.03266 -12.69590 -12.62375 -12.35626 -12.19261 -12.14013 -12.01168 -11.84635 -11.49353 -11.23839 -11.07119 -11.03301 -10.95631 -10.79582 -10.52576 -10.37642 -10.00405 -9.54643 -9.45382 -9.08546 -8.80943 -8.67545 -8.22354 -6.23815 -4.26352 0.74752 0.92196 1.69671 2.05970 2.99896 3.22298 3.24613 3.31359 3.38970 3.78900 4.30510 4.31479 4.44470 4.52007 4.52777 4.74509 4.86444 5.01754 5.05151 5.11488 5.23058 5.44566 5.53937 5.55173 5.64869 5.75522 5.82530 5.84749 6.02225 6.02987 6.19881 6.32529 6.38545 6.74948 7.01439 7.13983 7.34054 8.07579 8.45026 8.70114 8.82866 9.35808 10.88105 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.004355 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.906766 B = 6427.501612 C = 7728.815482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.696 5.696 11 C 0.528 3.472 12 O -0.548 6.548 13 C -0.072 4.072 14 C -0.044 4.044 15 C -0.097 4.097 16 C -0.095 4.095 17 C -0.033 4.033 18 Cl -0.054 7.054 19 C -0.025 4.025 20 Cl -0.051 7.051 21 C -0.085 4.085 22 C -0.112 4.112 23 C -0.138 4.138 24 C -0.126 4.126 25 H 0.268 0.732 26 H 0.022 0.978 27 H 0.025 0.975 28 H 0.397 0.603 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 -16.543 3.858 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.344 5.344 11 C 0.312 3.688 12 O -0.427 6.427 13 C -0.076 4.076 14 C -0.044 4.044 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.061 4.061 18 Cl -0.025 7.025 19 C -0.053 4.053 20 Cl -0.022 7.022 21 C -0.104 4.104 22 C -0.149 4.149 23 C -0.175 4.175 24 C -0.163 4.163 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.230 0.770 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.210 -15.745 4.086 20.339 hybrid contribution -0.186 0.581 0.400 0.730 sum 12.024 -15.164 4.486 19.865 Atomic orbital electron populations 1.69877 1.06196 1.27435 1.49298 1.24776 0.94771 0.99101 0.93836 0.86841 0.80586 0.83352 0.79057 1.19810 1.20850 1.18558 1.21055 0.88395 0.95228 1.53441 0.90258 1.19528 0.95405 0.78386 0.96813 1.46112 1.05436 1.11139 1.71667 1.19552 0.83301 0.88619 0.77349 1.90651 1.55721 1.45448 1.50857 1.21067 0.98984 0.94089 0.93448 1.19494 0.96436 0.95320 0.93187 1.21166 0.96234 0.95048 0.99078 1.21012 1.00036 1.00697 0.89610 1.20772 0.99852 0.96030 0.89425 1.98384 1.87198 1.78110 1.38819 1.20701 0.99943 0.96695 0.87931 1.98389 1.90167 1.89225 1.24386 1.20900 1.00079 0.99590 0.89846 1.22895 0.92488 1.03085 0.96472 1.22846 0.96326 1.01851 0.96485 1.23043 0.99097 0.99595 0.94582 0.92235 0.95991 0.95725 0.76980 0.83887 0.83834 0.84002 0.89487 0.89496 0.90984 0.89509 0.88784 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.95 16 7 C -0.54 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 10 N -0.70 -13.73 5.46 -61.47 -0.34 -14.07 16 11 C 0.53 9.54 6.40 -10.99 -0.07 9.47 16 12 O -0.55 -11.77 15.89 5.56 0.09 -11.68 16 13 C -0.07 -0.94 0.93 -156.00 -0.14 -1.08 16 14 C -0.04 -0.53 4.74 -104.62 -0.50 -1.03 16 15 C -0.10 -0.99 9.05 -39.58 -0.36 -1.35 16 16 C -0.09 -0.96 9.83 -39.55 -0.39 -1.35 16 17 C -0.03 -0.39 6.32 -39.47 -0.25 -0.64 16 18 Cl -0.05 -0.61 27.96 -51.86 -1.45 -2.06 16 19 C -0.03 -0.32 6.32 -39.47 -0.25 -0.57 16 20 Cl -0.05 -0.64 27.96 -51.86 -1.45 -2.09 16 21 C -0.09 -1.12 9.24 -39.56 -0.37 -1.48 16 22 C -0.11 -1.28 6.94 -25.78 -0.18 -1.46 16 23 C -0.14 -1.47 7.81 -25.77 -0.20 -1.67 16 24 C -0.13 -1.29 6.30 -25.92 -0.16 -1.45 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.55 7.58 -51.93 -0.39 0.16 16 27 H 0.02 0.63 7.19 -51.93 -0.37 0.26 16 28 H 0.40 7.08 8.28 -40.82 -0.34 6.74 16 29 H 0.14 1.12 6.44 -52.49 -0.34 0.78 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.09 1.15 7.36 -51.93 -0.38 0.77 16 33 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.73 6.83 -51.93 -0.35 0.37 16 37 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -30.92 341.55 -9.51 -40.43 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.29 Total: 3.42 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.33 Total: -10.24 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.44 Total: -39.56 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -2.90 Total: -4.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.92 -9.51 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.606 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds