Wall clock time and date at job start Tue Mar 31 2020 15:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48504 * 109.47259 * 269.99585 * 3 2 1 5 5 H 1.48503 * 109.47023 * 29.99824 * 3 2 1 6 6 H 1.48501 * 109.47330 * 149.99347 * 3 2 1 7 7 C 1.37874 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99836 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00165 * 179.73258 * 7 2 1 10 10 N 1.46504 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99886 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00294 * 354.98657 * 11 10 9 13 13 C 1.50700 * 119.99873 * 174.98490 * 11 10 9 14 14 C 1.50710 * 112.84749 * 303.82690 * 13 11 10 15 15 C 1.38272 * 119.97455 * 113.56721 * 14 13 11 16 16 C 1.38207 * 120.03115 * 179.72859 * 15 14 13 17 17 C 1.38346 * 120.00147 * 0.54227 * 16 15 14 18 18 Cl 1.73601 * 120.01838 * 179.75330 * 17 16 15 19 19 C 1.38445 * 119.96293 * 359.72561 * 17 16 15 20 20 Cl 1.73595 * 120.02112 * 180.02562 * 19 17 16 21 21 C 1.38200 * 119.98406 * 293.83397 * 14 13 11 22 22 C 1.53776 * 113.61666 * 172.63671 * 13 11 10 23 23 C 1.54056 * 86.98464 * 270.83443 * 22 13 11 24 24 C 1.53781 * 87.07596 * 334.56685 * 23 22 13 25 25 H 0.97004 * 120.00007 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46518 * 299.99330 * 9 7 2 27 27 H 1.08994 * 109.47700 * 59.99941 * 9 7 2 28 28 H 0.97000 * 119.99865 * 359.97438 * 10 9 7 29 29 H 1.07988 * 119.98367 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.99842 * 180.29980 * 16 15 14 31 31 H 1.08003 * 119.99719 * 0.03174 * 21 14 13 32 32 H 1.08998 * 113.61551 * 25.42368 * 22 13 11 33 33 H 1.08999 * 113.61979 * 156.33644 * 22 13 11 34 34 H 1.08996 * 113.62208 * 220.01935 * 23 22 13 35 35 H 1.08999 * 113.68679 * 89.12077 * 23 22 13 36 36 H 1.08999 * 113.61641 * 270.87663 * 24 23 22 37 37 H 1.09001 * 113.69206 * 139.98550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 -0.0056 10 7 3.9999 -2.5753 -0.0031 11 6 5.3249 -2.8215 -0.0082 12 8 6.1118 -1.9040 -0.1065 13 6 5.8287 -4.2370 0.1085 14 6 5.3193 -4.9398 1.3406 15 6 4.4559 -6.0127 1.2167 16 6 3.9925 -6.6615 2.3456 17 6 4.3836 -6.2306 3.6007 18 17 3.7968 -7.0413 5.0192 19 6 5.2438 -5.1529 3.7248 20 17 5.7360 -4.6113 5.2990 21 6 5.7111 -4.5081 2.5936 22 6 7.3476 -4.3689 -0.0922 23 6 7.0521 -4.5414 -1.5943 24 6 5.6637 -5.0580 -1.1814 25 1 -0.4850 0.8401 -0.0004 26 1 3.8711 -0.6828 -0.8985 27 1 3.8785 -0.6778 0.8814 28 1 3.3695 -3.3125 0.0022 29 1 4.1467 -6.3463 0.2373 30 1 3.3220 -7.5025 2.2481 31 1 6.3817 -3.6669 2.6897 32 1 7.8998 -3.4593 0.1439 33 1 7.7741 -5.2572 0.3736 34 1 7.6727 -5.2958 -2.0776 35 1 7.0221 -3.6015 -2.1454 36 1 5.6307 -6.1343 -1.0128 37 1 4.8565 -4.7051 -1.8232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787619694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:20 Heat of formation + Delta-G solvation = -29.804089 kcal Electronic energy + Delta-G solvation = -23058.229106 eV Core-core repulsion = 19465.712447 eV Total energy + Delta-G solvation = -3592.516658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10750 -40.10207 -38.47802 -37.57732 -37.36154 -36.17168 -34.43395 -32.32953 -31.90049 -30.16531 -27.18186 -26.74604 -24.46995 -23.76084 -23.02252 -22.20358 -20.46954 -18.99153 -18.53584 -17.73144 -17.15860 -16.98716 -16.57749 -16.28954 -16.16742 -15.56413 -15.33502 -15.10918 -14.89214 -14.65823 -14.28219 -14.02841 -13.58616 -13.44951 -13.06945 -12.99215 -12.93892 -12.76417 -12.72389 -12.41685 -12.17647 -11.96919 -11.94297 -11.85751 -11.67399 -11.42722 -11.29182 -10.93023 -10.85751 -10.00648 -9.96741 -9.64338 -8.41028 -6.47686 -0.16450 0.03318 0.77691 1.15045 1.30302 1.33100 1.44624 1.59713 2.23541 2.26662 2.46224 2.94407 3.36350 3.50232 3.60149 3.62297 3.81698 3.89131 4.07028 4.15860 4.32606 4.45554 4.66989 4.75916 4.78898 4.80667 4.87149 4.99097 4.99776 5.05643 5.11033 5.13930 5.23921 5.31659 5.46820 5.48413 5.54131 6.06518 6.52591 6.78558 7.13675 7.33334 8.73620 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.004355 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.906766 B = 6427.501612 C = 7728.815482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.030 3.970 3 Si 0.933 3.067 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.698 5.698 11 C 0.527 3.473 12 O -0.586 6.586 13 C -0.072 4.072 14 C -0.051 4.051 15 C -0.086 4.086 16 C -0.088 4.088 17 C -0.042 4.042 18 Cl -0.052 7.052 19 C -0.039 4.039 20 Cl -0.058 7.058 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.113 4.113 25 H 0.272 0.728 26 H 0.013 0.987 27 H 0.009 0.991 28 H 0.407 0.593 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.133 0.867 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.364 -18.621 3.123 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.109 3.891 10 N -0.346 5.346 11 C 0.314 3.686 12 O -0.467 6.467 13 C -0.075 4.075 14 C -0.052 4.052 15 C -0.104 4.104 16 C -0.107 4.107 17 C -0.069 4.069 18 Cl -0.023 7.023 19 C -0.067 4.067 20 Cl -0.029 7.029 21 C -0.119 4.119 22 C -0.146 4.146 23 C -0.174 4.174 24 C -0.150 4.150 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.242 0.758 29 H 0.193 0.807 30 H 0.190 0.810 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.716 -17.853 3.350 22.173 hybrid contribution -0.348 1.168 0.657 1.385 sum 12.368 -16.685 4.007 21.152 Atomic orbital electron populations 1.69974 1.07601 1.28551 1.50648 1.25539 0.95481 1.02443 0.93622 0.85931 0.79232 0.79667 0.79519 1.18795 1.19874 1.18734 1.21240 0.89780 0.94556 1.52585 0.92184 1.19101 0.93538 0.80910 0.95534 1.45944 1.06611 1.09611 1.72454 1.20429 0.82058 0.90758 0.75377 1.90627 1.56431 1.47539 1.52136 1.20957 1.00032 0.90933 0.95579 1.19473 0.97351 0.96206 0.92126 1.21498 0.94562 0.93745 1.00567 1.21386 0.99591 1.01022 0.88673 1.20992 0.99735 0.95855 0.90348 1.98385 1.87073 1.77895 1.38900 1.20796 1.00824 0.97469 0.87602 1.98380 1.90321 1.89404 1.24805 1.20881 1.00640 0.99681 0.90709 1.22959 0.91113 1.03105 0.97462 1.22819 0.97312 1.01566 0.95692 1.23147 0.98531 1.01225 0.92092 0.91861 0.96914 0.97327 0.75814 0.80712 0.80965 0.85450 0.92047 0.86741 0.87968 0.92177 0.84865 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 2 C 0.03 1.67 5.47 84.65 0.46 2.14 16 3 Si 0.93 44.06 27.47 68.60 1.88 45.95 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 7 C -0.54 -29.78 9.83 25.60 0.25 -29.53 16 8 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.37 4.50 85.63 0.39 11.76 16 10 N -0.70 -27.49 5.46 -466.80 -2.55 -30.04 16 11 C 0.53 19.01 6.40 87.66 0.56 19.57 16 12 O -0.59 -25.75 15.89 -3.01 -0.05 -25.79 16 13 C -0.07 -1.73 0.93 -53.15 -0.05 -1.78 16 14 C -0.05 -1.13 4.74 -19.86 -0.09 -1.22 16 15 C -0.09 -1.43 9.05 22.27 0.20 -1.23 16 16 C -0.09 -1.50 9.83 22.29 0.22 -1.28 16 17 C -0.04 -0.91 6.32 22.35 0.14 -0.77 16 18 Cl -0.05 -1.08 27.96 -2.72 -0.08 -1.15 16 19 C -0.04 -0.98 6.32 22.34 0.14 -0.84 16 20 Cl -0.06 -1.46 27.96 -2.72 -0.08 -1.54 16 21 C -0.10 -2.56 9.24 22.29 0.21 -2.36 16 22 C -0.11 -2.31 6.94 31.21 0.22 -2.10 16 23 C -0.14 -2.57 7.81 31.21 0.24 -2.33 16 24 C -0.11 -1.92 6.30 31.12 0.20 -1.73 16 25 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.01 0.65 7.58 -2.39 -0.02 0.64 16 27 H 0.01 0.46 7.19 -2.39 -0.02 0.44 16 28 H 0.41 14.24 8.28 -92.71 -0.77 13.47 16 29 H 0.18 1.78 6.44 -2.92 -0.02 1.76 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.06 1.63 7.36 -2.39 -0.02 1.62 16 33 H 0.11 1.82 8.09 -2.39 -0.02 1.80 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.13 1.29 6.83 -2.39 -0.02 1.27 16 37 H 0.07 1.39 8.09 -2.39 -0.02 1.38 16 Total: -1.00 -68.45 341.55 2.81 -65.64 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.29 Total: 13.53 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.08 Total: -11.70 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.25 Total: -84.94 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.15 Total: -2.69 kcal Total: -68.45 2.81 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.837 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds