Wall clock time and date at job start Tue Mar 31 2020 15:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 120.03850 * 2 1 4 4 Cl 1.73599 * 119.97897 * 359.97438 * 3 2 1 5 5 C 1.38383 * 120.04029 * 180.25778 * 3 2 1 6 6 C 1.38286 * 120.13153 * 359.44240 * 5 3 2 7 7 C 1.38092 * 120.08105 * 0.56129 * 6 5 3 8 8 C 1.38838 * 120.04209 * 179.97438 * 2 1 3 9 9 N 1.39885 * 120.06773 * 0.04156 * 8 2 1 10 10 C 1.34775 * 120.00020 * 224.37932 * 9 8 2 11 11 S 1.71195 * 119.99998 * 5.46791 * 10 9 8 12 12 N 1.34778 * 119.99818 * 185.47099 * 10 9 8 13 13 C 1.46495 * 119.99971 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47405 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99466 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99954 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99803 * 180.02562 * 16 14 13 18 18 H 1.08008 * 119.99623 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00202 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99634 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47444 * 60.00304 * 21 19 17 23 23 H 1.48500 * 109.47129 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46941 * 300.00277 * 21 19 17 25 25 H 1.08996 * 109.47171 * 90.00083 * 1 2 3 26 26 H 1.09005 * 109.46541 * 210.00057 * 1 2 3 27 27 H 1.08994 * 109.47077 * 329.99658 * 1 2 3 28 28 H 1.08003 * 119.93111 * 179.72681 * 5 3 2 29 29 H 1.07997 * 119.96262 * 180.27420 * 6 5 3 30 30 H 1.08011 * 120.02160 * 179.69810 * 7 6 5 31 31 H 0.97003 * 120.00068 * 44.37379 * 9 8 2 32 32 H 0.96999 * 120.00273 * 359.97438 * 12 10 9 33 33 H 1.09003 * 109.46942 * 299.99830 * 13 12 10 34 34 H 1.09004 * 109.47136 * 59.99465 * 13 12 10 35 35 H 0.96996 * 120.00203 * 0.02562 * 16 14 13 36 36 H 0.97000 * 120.00044 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 17 1.3315 2.7005 -0.0007 5 6 3.5829 1.1969 -0.0054 6 6 4.2772 0.0009 0.0009 7 6 3.5912 -1.1976 0.0008 8 6 2.2021 -1.2019 0.0005 9 7 1.5050 -2.4146 0.0002 10 6 1.8919 -3.4145 0.8169 11 16 3.1458 -3.1550 1.9532 12 7 1.2917 -4.6188 0.7389 13 6 1.7119 -5.7055 1.6269 14 6 0.8896 -6.9354 1.3397 15 8 0.0369 -6.9070 0.4776 16 7 1.1026 -8.0670 2.0401 17 6 0.3549 -9.1860 1.7784 18 1 -0.4044 -9.1607 1.0107 19 6 0.5747 -10.3529 2.5000 20 7 1.4990 -10.3837 3.4337 21 14 -0.4435 -11.8777 2.1430 22 1 -0.2432 -12.2870 0.7297 23 1 -0.0173 -12.9794 3.0429 24 1 -1.8798 -11.5788 2.3730 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 4.1217 2.1329 -0.0098 29 1 5.3571 0.0042 0.0011 30 1 4.1345 -2.1311 0.0007 31 1 0.7431 -2.5360 -0.5878 32 1 0.5810 -4.7657 0.0953 33 1 2.7661 -5.9253 1.4585 34 1 1.5647 -5.4045 2.6642 35 1 1.7848 -8.0898 2.7292 36 1 1.6522 -11.1981 3.9377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795162664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:17 Heat of formation + Delta-G solvation = 0.440449 kcal Electronic energy + Delta-G solvation = -21808.085205 eV Core-core repulsion = 18251.216506 eV Total energy + Delta-G solvation = -3556.868699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56884 -39.05499 -37.86656 -36.66501 -35.10839 -34.12001 -32.96257 -31.54105 -30.12612 -28.00166 -27.02715 -24.96899 -23.96276 -22.44890 -21.84138 -19.95690 -18.78404 -18.50971 -17.92164 -16.38537 -16.23511 -15.92156 -15.52703 -15.26154 -15.12282 -14.63061 -14.47624 -14.45566 -13.77352 -13.64847 -13.53860 -12.81403 -12.72927 -12.49372 -12.37465 -11.83039 -11.75811 -11.72531 -11.57513 -11.19252 -11.12025 -11.04395 -10.59239 -10.41720 -9.92748 -9.74622 -8.95243 -8.84853 -8.62740 -8.23965 -7.79159 -7.16817 -6.62771 -4.05875 0.71577 1.00014 1.47625 1.79752 1.96490 2.47202 3.04958 3.15317 3.18158 3.38760 3.43192 3.56742 4.00718 4.43433 4.60207 4.62257 4.77355 5.05204 5.06672 5.13091 5.25456 5.31580 5.36921 5.59262 5.72821 5.75373 5.80823 5.92360 5.96100 6.01969 6.21886 6.38270 6.50262 6.85575 7.20764 7.34736 7.78206 8.29172 8.91184 9.23665 9.70157 10.53268 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.002216 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.755859 B =12634.723290 C =13177.322245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C -0.034 4.034 4 Cl -0.070 7.070 5 C -0.104 4.104 6 C -0.106 4.106 7 C -0.061 4.061 8 C 0.151 3.849 9 N -0.639 5.639 10 C 0.557 3.443 11 S -0.628 6.628 12 N -0.644 5.644 13 C 0.112 3.888 14 C 0.420 3.580 15 O -0.604 6.604 16 N -0.538 5.538 17 C -0.310 4.310 18 H 0.106 0.894 19 C 0.029 3.971 20 N -0.888 5.888 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.411 0.589 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.398 0.602 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 20.930 -7.596 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.087 4.087 3 C -0.062 4.062 4 Cl -0.041 7.041 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.083 4.083 8 C 0.057 3.943 9 N -0.267 5.267 10 C 0.198 3.802 11 S -0.499 6.499 12 N -0.272 5.272 13 C -0.016 4.016 14 C 0.205 3.795 15 O -0.492 6.492 16 N -0.172 5.172 17 C -0.439 4.439 18 H 0.124 0.876 19 C -0.175 4.175 20 N -0.528 5.528 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.197 1.197 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.246 0.754 32 H 0.252 0.748 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.232 0.768 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.430 20.857 -7.138 22.178 hybrid contribution -1.468 -0.984 -0.686 1.895 sum 0.962 19.873 -7.824 21.379 Atomic orbital electron populations 1.20842 0.90195 1.03966 1.02844 1.19436 0.96568 0.90288 1.02396 1.20366 0.92164 0.86038 1.07624 1.98353 1.77044 1.31697 1.97028 1.21062 0.91699 0.99371 1.00229 1.20903 1.00344 0.90788 1.00545 1.21424 0.92301 1.00117 0.94453 1.16921 0.90990 0.82520 1.03869 1.42058 1.33149 1.11407 1.40064 1.22278 0.89561 0.81659 0.86738 1.93448 1.28657 1.89935 1.37903 1.44765 1.36502 1.08162 1.37731 1.21435 1.00484 0.84999 0.94653 1.19601 0.88103 0.84970 0.86827 1.90507 1.37923 1.84201 1.36531 1.41745 1.33631 1.09118 1.32701 1.19681 1.16645 0.87781 1.19781 0.87648 1.25363 0.97030 0.99631 0.95478 1.69601 1.31429 1.29861 1.21865 0.85848 0.79693 0.79808 0.78504 1.19686 1.20704 1.19692 0.90569 0.91334 0.90190 0.84898 0.84542 0.83540 0.75352 0.74825 0.87542 0.87615 0.76752 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.16 36.01 0.33 -0.68 16 2 C -0.08 -0.84 5.90 -104.39 -0.62 -1.46 16 3 C -0.03 -0.34 6.31 -39.52 -0.25 -0.59 16 4 Cl -0.07 -0.62 27.29 -51.86 -1.42 -2.04 16 5 C -0.10 -0.94 9.83 -39.51 -0.39 -1.32 16 6 C -0.11 -0.99 10.04 -39.62 -0.40 -1.39 16 7 C -0.06 -0.69 7.88 -39.38 -0.31 -1.00 16 8 C 0.15 1.68 5.81 -83.71 -0.49 1.19 16 9 N -0.64 -6.85 4.50 -11.41 -0.05 -6.90 16 10 C 0.56 7.70 7.74 -86.92 -0.67 7.03 16 11 S -0.63 -10.69 25.28 -107.50 -2.72 -13.41 16 12 N -0.64 -9.23 5.53 -63.21 -0.35 -9.58 16 13 C 0.11 1.85 5.61 -5.19 -0.03 1.82 16 14 C 0.42 8.93 7.85 -10.98 -0.09 8.84 16 15 O -0.60 -14.42 15.24 5.55 0.08 -14.33 16 16 N -0.54 -12.66 5.29 -10.96 -0.06 -12.72 16 17 C -0.31 -8.07 9.68 -14.93 -0.14 -8.21 16 18 H 0.11 2.86 7.16 -52.48 -0.38 2.48 16 19 C 0.03 0.73 5.50 -17.47 -0.10 0.64 16 20 N -0.89 -22.93 13.05 55.50 0.72 -22.21 16 21 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.58 7.34 -51.93 -0.38 0.20 16 27 H 0.08 0.66 6.90 -51.93 -0.36 0.30 16 28 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.15 1.84 6.53 -52.48 -0.34 1.49 16 31 H 0.41 3.28 8.34 -40.82 -0.34 2.94 16 32 H 0.41 5.65 7.46 -40.82 -0.30 5.34 16 33 H 0.11 1.72 7.99 -51.93 -0.41 1.30 16 34 H 0.11 1.73 7.99 -51.93 -0.42 1.32 16 35 H 0.40 9.03 7.90 -40.82 -0.32 8.71 16 36 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -30.33 338.54 -10.51 -40.84 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -3.66 Total: 15.55 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -3.15 Total: 4.87 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.27 Total: -51.41 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -2.72 Total: -13.41 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.33 -10.51 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.283 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds