Wall clock time and date at job start Tue Mar 31 2020 15:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 120.03850 * 2 1 4 4 Cl 1.73599 * 119.97897 * 359.97438 * 3 2 1 5 5 C 1.38383 * 120.04029 * 180.25778 * 3 2 1 6 6 C 1.38286 * 120.13153 * 359.44240 * 5 3 2 7 7 C 1.38092 * 120.08105 * 0.56129 * 6 5 3 8 8 C 1.38838 * 120.04209 * 179.97438 * 2 1 3 9 9 N 1.39885 * 120.06773 * 0.04156 * 8 2 1 10 10 C 1.34775 * 120.00020 * 224.37932 * 9 8 2 11 11 S 1.71195 * 119.99998 * 5.46791 * 10 9 8 12 12 N 1.34778 * 119.99818 * 185.47099 * 10 9 8 13 13 C 1.46495 * 119.99971 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47405 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99466 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99954 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99803 * 180.02562 * 16 14 13 18 18 H 1.08008 * 119.99623 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00202 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99634 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47444 * 60.00304 * 21 19 17 23 23 H 1.48500 * 109.47129 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46941 * 300.00277 * 21 19 17 25 25 H 1.08996 * 109.47171 * 90.00083 * 1 2 3 26 26 H 1.09005 * 109.46541 * 210.00057 * 1 2 3 27 27 H 1.08994 * 109.47077 * 329.99658 * 1 2 3 28 28 H 1.08003 * 119.93111 * 179.72681 * 5 3 2 29 29 H 1.07997 * 119.96262 * 180.27420 * 6 5 3 30 30 H 1.08011 * 120.02160 * 179.69810 * 7 6 5 31 31 H 0.97003 * 120.00068 * 44.37379 * 9 8 2 32 32 H 0.96999 * 120.00273 * 359.97438 * 12 10 9 33 33 H 1.09003 * 109.46942 * 299.99830 * 13 12 10 34 34 H 1.09004 * 109.47136 * 59.99465 * 13 12 10 35 35 H 0.96996 * 120.00203 * 0.02562 * 16 14 13 36 36 H 0.97000 * 120.00044 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 17 1.3315 2.7005 -0.0007 5 6 3.5829 1.1969 -0.0054 6 6 4.2772 0.0009 0.0009 7 6 3.5912 -1.1976 0.0008 8 6 2.2021 -1.2019 0.0005 9 7 1.5050 -2.4146 0.0002 10 6 1.8919 -3.4145 0.8169 11 16 3.1458 -3.1550 1.9532 12 7 1.2917 -4.6188 0.7389 13 6 1.7119 -5.7055 1.6269 14 6 0.8896 -6.9354 1.3397 15 8 0.0369 -6.9070 0.4776 16 7 1.1026 -8.0670 2.0401 17 6 0.3549 -9.1860 1.7784 18 1 -0.4044 -9.1607 1.0107 19 6 0.5747 -10.3529 2.5000 20 7 1.4990 -10.3837 3.4337 21 14 -0.4435 -11.8777 2.1430 22 1 -0.2432 -12.2870 0.7297 23 1 -0.0173 -12.9794 3.0429 24 1 -1.8798 -11.5788 2.3730 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 4.1217 2.1329 -0.0098 29 1 5.3571 0.0042 0.0011 30 1 4.1345 -2.1311 0.0007 31 1 0.7431 -2.5360 -0.5878 32 1 0.5810 -4.7657 0.0953 33 1 2.7661 -5.9253 1.4585 34 1 1.5647 -5.4045 2.6642 35 1 1.7848 -8.0898 2.7292 36 1 1.6522 -11.1981 3.9377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795162664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:16 Heat of formation + Delta-G solvation = -17.719380 kcal Electronic energy + Delta-G solvation = -21808.872675 eV Core-core repulsion = 18251.216506 eV Total energy + Delta-G solvation = -3557.656169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.49569 -40.55606 -39.08225 -37.48159 -36.36356 -35.79433 -33.73786 -33.41949 -31.08095 -29.30385 -27.83970 -26.61868 -25.20707 -23.37612 -22.64710 -21.55316 -20.22925 -19.84348 -19.19929 -17.67631 -17.20408 -17.10545 -16.84581 -16.54656 -16.46107 -16.13651 -15.58449 -15.41776 -15.22872 -14.88719 -14.33665 -14.19877 -13.60893 -13.55881 -13.49998 -13.39290 -12.93968 -12.58229 -12.56731 -12.49531 -12.46852 -12.30563 -12.14939 -11.75745 -11.59402 -10.93535 -10.68591 -10.14063 -9.73292 -9.54005 -9.05164 -8.53648 -8.42184 -6.04273 -0.22973 0.22509 0.45418 0.74546 1.05881 1.35144 1.35926 1.43760 1.53840 1.84815 2.23261 2.37834 2.62540 2.99685 3.13757 3.71442 3.87928 4.01281 4.07608 4.19811 4.32472 4.37593 4.38750 4.60015 4.63803 4.65106 4.81355 5.10526 5.12957 5.21905 5.35186 5.36474 5.43117 5.63955 5.86156 5.93121 6.16693 6.42217 6.99584 7.38495 7.87591 8.62667 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.002216 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.755859 B =12634.723290 C =13177.322245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C -0.045 4.045 4 Cl -0.061 7.061 5 C -0.099 4.099 6 C -0.107 4.107 7 C -0.074 4.074 8 C 0.129 3.871 9 N -0.616 5.616 10 C 0.578 3.422 11 S -0.687 6.687 12 N -0.643 5.643 13 C 0.131 3.869 14 C 0.429 3.571 15 O -0.627 6.627 16 N -0.552 5.552 17 C -0.339 4.339 18 H 0.088 0.912 19 C -0.008 4.008 20 N -0.912 5.912 21 Si 0.996 3.004 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.270 1.270 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.131 0.869 31 H 0.424 0.576 32 H 0.417 0.583 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.401 0.599 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 22.121 -8.308 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.087 4.087 3 C -0.072 4.072 4 Cl -0.032 7.032 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.096 4.096 8 C 0.036 3.964 9 N -0.243 5.243 10 C 0.216 3.784 11 S -0.560 6.560 12 N -0.271 5.271 13 C 0.004 3.996 14 C 0.216 3.784 15 O -0.516 6.516 16 N -0.187 5.187 17 C -0.468 4.468 18 H 0.106 0.894 19 C -0.210 4.210 20 N -0.551 5.551 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.195 1.195 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.149 0.851 31 H 0.265 0.735 32 H 0.258 0.742 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.235 0.765 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.058 22.106 -7.882 23.559 hybrid contribution -1.361 -1.151 -0.560 1.868 sum 0.697 20.955 -8.442 22.603 Atomic orbital electron populations 1.20895 0.88991 1.03919 1.04019 1.19604 0.97505 0.89972 1.01606 1.20548 0.92700 0.86349 1.07631 1.98357 1.76909 1.31002 1.96981 1.21358 0.91593 1.00135 0.98681 1.21152 1.01451 0.90257 0.99748 1.21425 0.92546 1.00307 0.95316 1.17057 0.91134 0.82664 1.05556 1.41947 1.32943 1.10624 1.38822 1.21832 0.88478 0.81833 0.86299 1.93580 1.31341 1.90634 1.40437 1.44524 1.36894 1.07889 1.37769 1.21146 0.99760 0.83411 0.95328 1.20281 0.87348 0.85543 0.85266 1.90488 1.38967 1.84902 1.37279 1.41792 1.33971 1.09415 1.33476 1.19687 1.17416 0.89337 1.20353 0.89421 1.26129 0.97893 1.01888 0.95055 1.69668 1.32344 1.30693 1.22407 0.84942 0.78182 0.76549 0.78431 1.19439 1.19706 1.19479 0.88734 0.91528 0.90069 0.82641 0.82548 0.85108 0.73509 0.74163 0.86695 0.86964 0.76489 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.16 71.24 0.65 -1.12 16 2 C -0.08 -1.54 5.90 -19.72 -0.12 -1.66 16 3 C -0.04 -0.79 6.31 22.31 0.14 -0.65 16 4 Cl -0.06 -0.97 27.29 -2.72 -0.07 -1.04 16 5 C -0.10 -1.56 9.83 22.32 0.22 -1.34 16 6 C -0.11 -1.84 10.04 22.25 0.22 -1.62 16 7 C -0.07 -1.62 7.88 22.40 0.18 -1.45 16 8 C 0.13 2.72 5.81 38.16 0.22 2.94 16 9 N -0.62 -12.40 4.50 -190.00 -0.86 -13.26 16 10 C 0.58 15.44 7.74 179.05 1.39 16.83 16 11 S -0.69 -23.28 25.28 -56.49 -1.43 -24.71 16 12 N -0.64 -17.78 5.53 -353.90 -1.96 -19.74 16 13 C 0.13 4.28 5.61 85.64 0.48 4.76 16 14 C 0.43 18.24 7.85 87.66 0.69 18.93 16 15 O -0.63 -29.94 15.24 -3.07 -0.05 -29.98 16 16 N -0.55 -26.27 5.29 -306.97 -1.62 -27.89 16 17 C -0.34 -17.89 9.68 84.04 0.81 -17.08 16 18 H 0.09 4.86 7.16 -2.91 -0.02 4.84 16 19 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 20 N -0.91 -47.12 13.05 21.66 0.28 -46.84 16 21 Si 1.00 40.45 29.55 68.60 2.03 42.47 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.99 7.34 -2.38 -0.02 0.98 16 27 H 0.08 1.18 6.90 -2.39 -0.02 1.16 16 28 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.13 3.29 6.53 -2.91 -0.02 3.27 16 31 H 0.42 6.02 8.34 -92.71 -0.77 5.25 16 32 H 0.42 10.94 7.46 -92.71 -0.69 10.25 16 33 H 0.12 3.64 7.99 -2.39 -0.02 3.62 16 34 H 0.11 3.61 7.99 -2.38 -0.02 3.59 16 35 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 36 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -64.83 338.54 0.65 -64.17 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -1.02 Total: 38.20 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.35 Total: 18.61 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.15 Total: -107.72 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: -23.28 SS G_CDS: -1.43 Total: -24.71 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -64.83 0.65 -64.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.453 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds