Wall clock time and date at job start Tue Mar 31 2020 14:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28449 * 125.17720 * 2 1 4 4 C 1.30912 * 110.92144 * 180.02562 * 3 2 1 5 5 Br 1.89098 * 126.07883 * 179.97438 * 4 3 2 6 6 C 1.39752 * 107.83785 * 359.77499 * 4 3 2 7 7 C 1.36593 * 125.18192 * 180.02562 * 2 1 3 8 8 C 1.47163 * 126.87579 * 359.92830 * 7 2 1 9 9 O 1.21626 * 119.99949 * 173.83907 * 8 7 2 10 10 N 1.34773 * 120.00109 * 354.10925 * 8 7 2 11 11 C 1.46499 * 120.00286 * 184.53086 * 10 8 7 12 12 C 1.52994 * 109.47495 * 174.99721 * 11 10 8 13 13 C 1.50701 * 115.54811 * 304.06399 * 12 11 10 14 14 H 1.08004 * 119.99675 * 144.23700 * 13 12 11 15 15 C 1.37871 * 120.00289 * 324.23474 * 13 12 11 16 16 N 1.31518 * 119.99809 * 3.21059 * 15 13 12 17 17 Si 1.86801 * 120.00172 * 183.20717 * 15 13 12 18 18 H 1.48511 * 109.46877 * 90.00080 * 17 15 13 19 19 H 1.48499 * 109.47261 * 209.99798 * 17 15 13 20 20 H 1.48489 * 109.47267 * 330.00281 * 17 15 13 21 21 C 1.52998 * 117.50204 * 158.39323 * 12 11 10 22 22 C 1.52997 * 117.49749 * 89.73322 * 12 11 10 23 23 H 1.09005 * 109.46899 * 262.06440 * 1 2 3 24 24 H 1.08997 * 109.47506 * 22.06574 * 1 2 3 25 25 H 1.09000 * 109.47189 * 142.07193 * 1 2 3 26 26 H 1.08001 * 127.32521 * 180.23909 * 6 4 3 27 27 H 0.96997 * 119.99927 * 4.52999 * 10 8 7 28 28 H 1.09001 * 109.47143 * 295.00140 * 11 10 8 29 29 H 1.09005 * 109.47119 * 54.99386 * 11 10 8 30 30 H 0.97004 * 119.99552 * 185.00891 * 16 15 13 31 31 H 1.09003 * 117.49809 * 359.97438 * 21 12 11 32 32 H 1.09002 * 117.50073 * 145.02015 * 21 12 11 33 33 H 1.09007 * 117.49415 * 214.98146 * 22 12 11 34 34 H 1.08996 * 117.50400 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0499 0.0000 4 6 3.4738 0.7275 -0.0005 5 35 4.9294 1.9346 -0.0015 6 6 3.5611 -0.6672 0.0043 7 6 2.2520 -1.1164 -0.0005 8 6 1.7986 -2.5165 0.0003 9 8 2.6075 -3.4177 -0.1133 10 7 0.4866 -2.7999 0.1216 11 6 0.0444 -4.1929 0.2223 12 6 -1.4641 -4.2321 0.4748 13 6 -1.9412 -3.4662 1.6817 14 1 -2.8900 -2.9509 1.6539 15 6 -1.1666 -3.4232 2.8214 16 7 0.0166 -3.9972 2.8344 17 14 -1.7976 -2.5495 4.3472 18 1 -2.5487 -3.5114 5.1934 19 1 -0.6498 -2.0051 5.1162 20 1 -2.6959 -1.4377 3.9451 21 6 -2.2070 -5.5209 0.1169 22 6 -2.3841 -4.2698 -0.7471 23 1 -0.3633 -0.1419 1.0179 24 1 -0.3634 0.9523 -0.3860 25 1 -0.3633 -0.8106 -0.6317 26 1 4.4592 -1.2671 0.0088 27 1 -0.1648 -2.0816 0.1421 28 1 0.2708 -4.7142 -0.7078 29 1 0.5637 -4.6802 1.0475 30 1 0.5306 -4.0304 3.6564 31 1 -1.6212 -6.3407 -0.2988 32 1 -3.0411 -5.8145 0.7542 33 1 -3.3347 -3.7408 -0.6778 34 1 -1.9148 -4.2662 -1.7309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:23 Heat of formation + Delta-G solvation = 81.447071 kcal Electronic energy + Delta-G solvation = -20247.717283 eV Core-core repulsion = 17037.180738 eV Total energy + Delta-G solvation = -3210.536545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.52720 -38.76293 -36.79268 -34.28913 -32.86502 -32.32373 -31.00998 -30.70277 -26.86203 -26.30943 -25.55553 -22.43098 -21.39812 -21.29063 -19.87334 -19.28883 -17.59120 -16.49780 -16.32882 -15.48883 -15.06589 -14.96939 -14.36184 -14.08672 -13.79110 -13.58193 -13.13680 -13.02631 -12.83122 -12.12825 -11.90489 -11.59910 -11.23245 -11.22046 -11.05296 -10.84599 -10.64802 -10.39793 -10.28752 -9.92252 -9.46173 -9.11517 -9.05088 -8.99971 -8.85220 -8.45446 -8.10406 -6.15243 -4.35705 1.26532 1.46212 2.35216 2.63828 3.11179 3.20678 3.22430 3.63519 3.87176 4.16764 4.48467 4.76413 4.93355 5.13345 5.23577 5.32588 5.42106 5.56362 5.69633 5.87966 6.15862 6.27424 6.37787 6.47180 6.55478 6.60713 6.77052 6.93136 7.12457 7.32247 7.45024 7.82095 7.83585 8.13896 8.26338 8.66300 8.82128 9.29187 10.74737 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.003852 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.658856 B = 7267.729914 C = 7869.772826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.263 5.263 3 N -0.252 5.252 4 C 0.014 3.986 5 Br 0.024 6.976 6 C -0.139 4.139 7 C -0.010 4.010 8 C 0.580 3.420 9 O -0.536 6.536 10 N -0.682 5.682 11 C 0.158 3.842 12 C 0.033 3.967 13 C -0.500 4.500 14 H 0.062 0.938 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.195 4.195 22 C -0.214 4.214 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.171 0.829 27 H 0.394 0.606 28 H 0.025 0.975 29 H 0.124 0.876 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 10.334 -5.777 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.054 5.054 3 N -0.088 5.088 4 C -0.221 4.221 5 Br 0.105 6.895 6 C -0.169 4.169 7 C -0.138 4.138 8 C 0.362 3.638 9 O -0.413 6.413 10 N -0.333 5.333 11 C 0.036 3.964 12 C 0.032 3.968 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.503 5.503 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.233 4.233 22 C -0.251 4.251 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.122 0.878 26 H 0.188 0.812 27 H 0.233 0.767 28 H 0.043 0.957 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.476 10.996 -5.719 13.550 hybrid contribution -0.641 -0.208 0.974 1.184 sum 4.835 10.788 -4.745 12.739 Atomic orbital electron populations 1.22592 0.72346 1.05972 1.06070 1.45775 1.07743 1.02310 1.49551 1.73119 1.02354 1.14136 1.19194 1.23256 0.91675 0.93162 1.13973 1.96660 1.34955 1.59710 1.98150 1.21922 0.96753 0.92065 1.06205 1.22216 0.91225 0.89439 1.10947 1.16763 0.83556 0.84870 0.78566 1.90777 1.53755 1.45511 1.51284 1.46116 1.05553 1.11336 1.70301 1.21299 0.94836 0.80165 1.00128 1.19242 0.89005 0.95950 0.92602 1.20517 1.04684 1.32182 0.96355 0.91938 1.25003 0.94158 0.95088 0.98739 1.69801 1.10439 1.42917 1.27098 0.86631 0.78548 0.80015 0.83187 1.20289 1.21080 1.19723 1.22933 1.04443 0.91826 1.04125 1.22989 1.02659 1.04054 0.95426 0.87845 0.87461 0.87791 0.81161 0.76665 0.95732 0.85839 0.92420 0.91319 0.90066 0.90497 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 9.77 59.85 0.58 1.46 16 2 N -0.26 -4.19 3.75 -63.88 -0.24 -4.43 16 3 N -0.25 -4.09 11.90 31.88 0.38 -3.71 16 4 C 0.01 0.22 7.72 -17.38 -0.13 0.09 16 5 Br 0.02 0.30 34.11 -68.01 -2.32 -2.02 16 6 C -0.14 -2.34 10.84 -38.95 -0.42 -2.76 16 7 C -0.01 -0.19 6.96 -82.06 -0.57 -0.76 16 8 C 0.58 11.96 7.79 -12.64 -0.10 11.87 16 9 O -0.54 -12.61 16.93 5.25 0.09 -12.52 16 10 N -0.68 -13.68 5.11 -61.47 -0.31 -13.99 16 11 C 0.16 3.50 4.61 -4.05 -0.02 3.48 16 12 C 0.03 0.71 2.00 -155.67 -0.31 0.40 16 13 C -0.50 -11.71 8.51 -34.44 -0.29 -12.00 16 14 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 15 C 0.07 1.80 5.36 -17.82 -0.10 1.70 16 16 N -0.87 -21.99 10.23 55.43 0.57 -21.43 16 17 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.19 -3.95 9.96 -26.70 -0.27 -4.22 16 22 C -0.21 -4.05 9.93 -26.70 -0.27 -4.31 16 23 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 24 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.25 5.98 -51.93 -0.31 0.94 16 26 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 27 H 0.39 7.11 3.86 -40.82 -0.16 6.96 16 28 H 0.02 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.12 3.16 5.81 -51.93 -0.30 2.86 16 30 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -27.63 313.09 -7.73 -35.35 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.69 Total: 9.00 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.89 Total: -5.05 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.39 Total: -43.57 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -2.32 Total: -2.02 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.63 -7.73 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.802 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds