Wall clock time and date at job start Tue Mar 31 2020 14:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28449 * 125.17720 * 2 1 4 4 C 1.30912 * 110.92144 * 180.02562 * 3 2 1 5 5 Br 1.89098 * 126.07883 * 179.97438 * 4 3 2 6 6 C 1.39752 * 107.83785 * 359.77499 * 4 3 2 7 7 C 1.36593 * 125.18192 * 180.02562 * 2 1 3 8 8 C 1.47163 * 126.87579 * 359.92830 * 7 2 1 9 9 O 1.21626 * 119.99949 * 173.83907 * 8 7 2 10 10 N 1.34773 * 120.00109 * 354.10925 * 8 7 2 11 11 C 1.46499 * 120.00286 * 184.53086 * 10 8 7 12 12 C 1.52994 * 109.47495 * 174.99721 * 11 10 8 13 13 C 1.50701 * 115.54811 * 304.06399 * 12 11 10 14 14 H 1.08004 * 119.99675 * 144.23700 * 13 12 11 15 15 C 1.37871 * 120.00289 * 324.23474 * 13 12 11 16 16 N 1.31518 * 119.99809 * 3.21059 * 15 13 12 17 17 Si 1.86801 * 120.00172 * 183.20717 * 15 13 12 18 18 H 1.48511 * 109.46877 * 90.00080 * 17 15 13 19 19 H 1.48499 * 109.47261 * 209.99798 * 17 15 13 20 20 H 1.48489 * 109.47267 * 330.00281 * 17 15 13 21 21 C 1.52998 * 117.50204 * 158.39323 * 12 11 10 22 22 C 1.52997 * 117.49749 * 89.73322 * 12 11 10 23 23 H 1.09005 * 109.46899 * 262.06440 * 1 2 3 24 24 H 1.08997 * 109.47506 * 22.06574 * 1 2 3 25 25 H 1.09000 * 109.47189 * 142.07193 * 1 2 3 26 26 H 1.08001 * 127.32521 * 180.23909 * 6 4 3 27 27 H 0.96997 * 119.99927 * 4.52999 * 10 8 7 28 28 H 1.09001 * 109.47143 * 295.00140 * 11 10 8 29 29 H 1.09005 * 109.47119 * 54.99386 * 11 10 8 30 30 H 0.97004 * 119.99552 * 185.00891 * 16 15 13 31 31 H 1.09003 * 117.49809 * 359.97438 * 21 12 11 32 32 H 1.09002 * 117.50073 * 145.02015 * 21 12 11 33 33 H 1.09007 * 117.49415 * 214.98146 * 22 12 11 34 34 H 1.08996 * 117.50400 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0499 0.0000 4 6 3.4738 0.7275 -0.0005 5 35 4.9294 1.9346 -0.0015 6 6 3.5611 -0.6672 0.0043 7 6 2.2520 -1.1164 -0.0005 8 6 1.7986 -2.5165 0.0003 9 8 2.6075 -3.4177 -0.1133 10 7 0.4866 -2.7999 0.1216 11 6 0.0444 -4.1929 0.2223 12 6 -1.4641 -4.2321 0.4748 13 6 -1.9412 -3.4662 1.6817 14 1 -2.8900 -2.9509 1.6539 15 6 -1.1666 -3.4232 2.8214 16 7 0.0166 -3.9972 2.8344 17 14 -1.7976 -2.5495 4.3472 18 1 -2.5487 -3.5114 5.1934 19 1 -0.6498 -2.0051 5.1162 20 1 -2.6959 -1.4377 3.9451 21 6 -2.2070 -5.5209 0.1169 22 6 -2.3841 -4.2698 -0.7471 23 1 -0.3633 -0.1419 1.0179 24 1 -0.3634 0.9523 -0.3860 25 1 -0.3633 -0.8106 -0.6317 26 1 4.4592 -1.2671 0.0088 27 1 -0.1648 -2.0816 0.1421 28 1 0.2708 -4.7142 -0.7078 29 1 0.5637 -4.6802 1.0475 30 1 0.5306 -4.0304 3.6564 31 1 -1.6212 -6.3407 -0.2988 32 1 -3.0411 -5.8145 0.7542 33 1 -3.3347 -3.7408 -0.6778 34 1 -1.9148 -4.2662 -1.7309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:23 Heat of formation + Delta-G solvation = 65.242647 kcal Electronic energy + Delta-G solvation = -20248.419960 eV Core-core repulsion = 17037.180738 eV Total energy + Delta-G solvation = -3211.239222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.80185 -40.40515 -38.46228 -35.66819 -34.35770 -34.09797 -32.27119 -31.92892 -28.18466 -27.80512 -27.34015 -23.89544 -22.94491 -22.60485 -21.40891 -20.92275 -19.04614 -18.11740 -17.60020 -16.90882 -16.77069 -16.70652 -15.87037 -15.62571 -15.24254 -14.89370 -14.67422 -14.26668 -14.14875 -13.61637 -13.45355 -13.24624 -12.97131 -12.58267 -12.48435 -12.32419 -12.15280 -12.02519 -11.61530 -11.38599 -11.15632 -10.86929 -10.68120 -10.44140 -10.18099 -10.03486 -9.78322 -7.97591 -6.22150 0.06710 0.11698 1.08155 1.39684 1.43147 1.46215 1.51622 2.07601 2.32819 2.40345 3.04133 3.31959 3.53704 3.66550 4.04128 4.19434 4.22097 4.27310 4.36258 4.49425 4.54433 4.74510 4.79180 4.98788 5.00830 5.12353 5.28955 5.37018 5.52903 5.60364 5.69079 5.98900 6.35043 6.52061 6.68054 6.85382 7.23186 7.44093 8.89301 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.003852 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.658856 B = 7267.729914 C = 7869.772826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.257 5.257 3 N -0.249 5.249 4 C 0.005 3.995 5 Br 0.055 6.945 6 C -0.140 4.140 7 C -0.035 4.035 8 C 0.579 3.421 9 O -0.574 6.574 10 N -0.675 5.675 11 C 0.167 3.833 12 C 0.005 3.995 13 C -0.498 4.498 14 H 0.065 0.935 15 C 0.038 3.962 16 N -0.892 5.892 17 Si 0.938 3.062 18 H -0.283 1.283 19 H -0.297 1.297 20 H -0.257 1.257 21 C -0.199 4.199 22 C -0.184 4.184 23 H 0.101 0.899 24 H 0.141 0.859 25 H 0.108 0.892 26 H 0.178 0.822 27 H 0.404 0.596 28 H 0.025 0.975 29 H 0.088 0.912 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 11.967 -6.474 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.048 5.048 3 N -0.086 5.086 4 C -0.229 4.229 5 Br 0.136 6.864 6 C -0.171 4.171 7 C -0.163 4.163 8 C 0.364 3.636 9 O -0.454 6.454 10 N -0.327 5.327 11 C 0.044 3.956 12 C 0.004 3.996 13 C -0.536 4.536 14 H 0.083 0.917 15 C -0.164 4.164 16 N -0.529 5.529 17 Si 0.765 3.235 18 H -0.209 1.209 19 H -0.224 1.224 20 H -0.181 1.181 21 C -0.237 4.237 22 C -0.222 4.222 23 H 0.119 0.881 24 H 0.159 0.841 25 H 0.126 0.874 26 H 0.195 0.805 27 H 0.245 0.755 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.475 12.658 -6.426 14.884 hybrid contribution -0.335 -0.688 1.160 1.389 sum 4.140 11.970 -5.266 13.717 Atomic orbital electron populations 1.22879 0.70597 1.08067 1.06259 1.46042 1.08713 1.01482 1.48586 1.73131 1.02654 1.13973 1.18878 1.23584 0.92393 0.93441 1.13460 1.96685 1.33285 1.58395 1.98055 1.22143 0.96695 0.92868 1.05348 1.21889 0.92233 0.88793 1.13341 1.17048 0.83276 0.85686 0.77608 1.90742 1.54607 1.46989 1.53037 1.46040 1.05775 1.10955 1.69886 1.20995 0.94998 0.81000 0.98630 1.19262 0.89013 0.97387 0.93926 1.20734 1.04407 1.31645 0.96806 0.91668 1.25532 0.94273 0.95785 1.00785 1.69995 1.11443 1.44633 1.26873 0.85858 0.77686 0.79416 0.80584 1.20870 1.22369 1.18121 1.22961 1.04070 0.92128 1.04576 1.22995 1.02080 1.02120 0.94958 0.88083 0.84081 0.87425 0.80483 0.75500 0.95683 0.89413 0.93381 0.90640 0.90357 0.89286 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.40 9.77 127.77 1.25 2.65 16 2 N -0.26 -7.84 3.75 -356.03 -1.33 -9.17 16 3 N -0.25 -7.66 11.90 -53.06 -0.63 -8.29 16 4 C 0.01 0.16 7.72 85.20 0.66 0.81 16 5 Br 0.05 1.27 34.11 -20.37 -0.69 0.58 16 6 C -0.14 -4.63 10.84 22.68 0.25 -4.38 16 7 C -0.03 -1.24 6.96 40.79 0.28 -0.95 16 8 C 0.58 24.19 7.79 86.59 0.67 24.87 16 9 O -0.57 -27.74 16.93 -4.11 -0.07 -27.81 16 10 N -0.67 -27.05 5.11 -466.64 -2.39 -29.44 16 11 C 0.17 7.45 4.61 86.38 0.40 7.84 16 12 C 0.00 0.20 2.00 -52.93 -0.11 0.10 16 13 C -0.50 -22.81 8.51 25.60 0.22 -22.60 16 14 H 0.07 2.90 7.82 -2.91 -0.02 2.88 16 15 C 0.04 1.81 5.36 84.65 0.45 2.26 16 16 N -0.89 -46.12 10.23 21.45 0.22 -45.90 16 17 Si 0.94 38.88 29.54 68.60 2.03 40.91 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.30 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 C -0.20 -7.79 9.96 30.62 0.30 -7.48 16 22 C -0.18 -6.50 9.93 30.62 0.30 -6.20 16 23 H 0.10 2.41 8.11 -2.38 -0.02 2.39 16 24 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.11 2.39 5.98 -2.39 -0.01 2.38 16 26 H 0.18 5.43 8.06 -2.91 -0.02 5.41 16 27 H 0.40 14.26 3.86 -92.71 -0.36 13.90 16 28 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.09 4.63 5.81 -2.38 -0.01 4.62 16 30 H 0.26 13.26 8.32 -92.71 -0.77 12.49 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -58.41 313.09 2.59 -55.82 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.78 Total: 26.37 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.68 Total: -3.08 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -4.13 Total: -92.79 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 35 Polarization: 1.27 SS G_CDS: -0.69 Total: 0.58 kcal Total: -58.41 2.59 -55.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.064 kcal (2) G-P(sol) polarization free energy of solvation -58.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds