Wall clock time and date at job start Tue Mar 31 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47094 * 86.72291 * 3 2 1 5 5 C 1.36934 * 120.00052 * 264.23018 * 4 3 2 6 6 H 1.07999 * 119.99845 * 196.86711 * 5 4 3 7 7 C 1.38816 * 120.00043 * 16.86348 * 5 4 3 8 8 N 1.31617 * 119.99598 * 22.15519 * 7 5 4 9 9 Si 1.86797 * 120.00042 * 202.15242 * 7 5 4 10 10 H 1.48494 * 109.47208 * 89.99988 * 9 7 5 11 11 H 1.48499 * 109.47207 * 210.00321 * 9 7 5 12 12 H 1.48504 * 109.47179 * 329.99980 * 9 7 5 13 13 C 1.46507 * 119.99968 * 84.22389 * 4 3 2 14 14 C 1.52999 * 109.46983 * 270.00468 * 13 4 3 15 15 S 1.81404 * 109.46776 * 180.02562 * 14 13 4 16 16 O 1.42099 * 110.54251 * 68.37377 * 15 14 13 17 17 O 1.42102 * 110.54176 * 291.62436 * 15 14 13 18 18 C 1.76205 * 104.44846 * 179.97438 * 15 14 13 19 19 C 1.38242 * 119.98722 * 269.72652 * 18 15 14 20 20 C 1.38213 * 120.01020 * 179.72692 * 19 18 15 21 21 C 1.38348 * 119.98691 * 0.54853 * 20 19 18 22 22 Cl 1.73605 * 120.01333 * 179.70674 * 21 20 19 23 23 C 1.38351 * 119.97518 * 359.72079 * 21 20 19 24 24 C 1.38216 * 119.98636 * 0.02562 * 23 21 20 25 25 H 4.40649 * 5.51347 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47450 * 326.72217 * 3 2 1 27 27 H 1.08996 * 109.47092 * 206.72057 * 3 2 1 28 28 H 0.97005 * 119.99198 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.46902 * 150.00531 * 13 4 3 30 30 H 1.08999 * 109.46697 * 30.00219 * 13 4 3 31 31 H 1.08994 * 109.47437 * 59.99754 * 14 13 4 32 32 H 1.08999 * 109.47200 * 299.99442 * 14 13 4 33 33 H 1.08000 * 119.99042 * 359.97438 * 19 18 15 34 34 H 1.07997 * 120.00381 * 180.27307 * 20 19 18 35 35 H 1.08002 * 120.01014 * 179.97438 * 23 21 20 36 36 H 1.07996 * 119.99226 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0781 -1.3790 5 6 3.4756 -1.2905 -1.9164 6 1 4.0804 -1.3341 -2.8100 7 6 3.0440 -2.4635 -1.3124 8 7 1.9904 -2.4485 -0.5237 9 14 3.9585 -4.0632 -1.6192 10 1 5.0275 -4.2253 -0.6013 11 1 3.0096 -5.2016 -1.5260 12 1 4.5655 -4.0344 -2.9742 13 6 3.2576 1.1403 -2.1832 14 6 1.9475 1.3916 -2.9323 15 16 2.1004 2.8999 -3.9286 16 8 3.0182 2.7020 -4.9952 17 8 2.1866 4.0443 -3.0907 18 6 0.5371 3.0607 -4.7255 19 6 0.3288 2.4790 -5.9621 20 6 -0.8990 2.6001 -6.5851 21 6 -1.9161 3.3133 -5.9760 22 17 -3.4561 3.4722 -6.7614 23 6 -1.7053 3.9000 -4.7409 24 6 -0.4787 3.7738 -4.1165 25 1 -1.0500 0.0002 0.0000 26 1 3.0098 -0.8583 0.5639 27 1 3.0089 0.9187 0.4621 28 1 1.6892 -3.2682 -0.1014 29 1 4.0694 1.0215 -2.9007 30 1 3.4708 1.9866 -1.5301 31 1 1.1356 1.5104 -2.2148 32 1 1.7342 0.5454 -3.5854 33 1 1.1244 1.9264 -6.4397 34 1 -1.0630 2.1419 -7.5492 35 1 -2.4987 4.4572 -4.2651 36 1 -0.3139 4.2320 -3.1526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:21 Heat of formation + Delta-G solvation = 34.205189 kcal Electronic energy + Delta-G solvation = -22770.520505 eV Core-core repulsion = 19182.823204 eV Total energy + Delta-G solvation = -3587.697301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.38128 -36.78673 -36.68192 -36.65813 -35.52246 -32.40969 -31.78844 -31.33757 -31.14428 -29.59836 -26.30026 -24.34161 -23.22815 -23.13797 -21.10495 -18.82582 -17.94267 -17.74281 -16.84493 -16.39783 -16.07759 -15.67447 -15.17736 -15.01639 -14.76968 -14.07876 -13.88838 -13.78801 -13.72384 -13.35524 -12.88184 -12.79951 -12.08657 -11.94023 -11.88723 -11.73111 -11.68033 -11.59985 -11.52627 -11.12198 -10.97533 -10.75218 -10.71415 -10.46511 -10.44529 -10.04021 -9.31533 -9.27256 -9.09629 -9.04529 -8.64635 -7.35476 -6.11177 -3.42194 0.27819 0.62317 1.03214 1.75212 3.12097 3.23075 3.25853 3.31555 3.32019 3.93459 4.18069 4.21312 4.31089 4.33612 4.60572 4.63673 5.02090 5.06125 5.11940 5.30940 5.33421 5.39298 5.43241 5.66265 5.67189 5.70124 5.87330 5.93526 5.97142 6.18879 6.43199 6.48161 6.56990 6.99316 7.20870 7.49693 7.94320 8.78236 8.96809 9.41113 9.86069 10.90377 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003474 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.939220 B = 8056.789882 C = 8437.846060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.101 4.101 3 C 0.258 3.742 4 N -0.555 5.555 5 C -0.264 4.264 6 H 0.086 0.914 7 C 0.007 3.993 8 N -0.872 5.872 9 Si 0.910 3.090 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.152 3.848 14 C -0.589 4.589 15 S 2.442 3.558 16 O -0.952 6.952 17 O -0.954 6.954 18 C -0.647 4.647 19 C -0.013 4.013 20 C -0.134 4.134 21 C 0.007 3.993 22 Cl -0.067 7.067 23 C -0.134 4.134 24 C -0.014 4.014 25 H 0.192 0.808 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.261 0.739 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 9.439 -6.578 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.103 4.103 3 C 0.133 3.867 4 N -0.274 5.274 5 C -0.396 4.396 6 H 0.104 0.896 7 C -0.195 4.195 8 N -0.514 5.514 9 Si 0.739 3.261 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.022 3.978 14 C -0.725 4.725 15 S 2.622 3.378 16 O -0.948 6.948 17 O -0.950 6.950 18 C -0.730 4.730 19 C -0.032 4.032 20 C -0.153 4.153 21 C -0.020 4.020 22 Cl -0.037 7.037 23 C -0.153 4.153 24 C -0.032 4.032 25 H 0.209 0.791 26 H 0.121 0.879 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.869 9.965 -6.726 13.378 hybrid contribution -1.389 -1.464 -0.474 2.073 sum -7.258 8.501 -7.200 13.296 Atomic orbital electron populations 1.24231 0.95376 1.07777 1.03879 1.24153 0.95183 0.94150 0.96863 1.18050 0.83041 0.99822 0.85762 1.44615 1.71492 1.03016 1.08242 1.19520 1.25726 0.82296 1.12046 0.89584 1.25074 0.96186 0.98423 0.99847 1.70143 1.20717 1.27737 1.32798 0.86164 0.79218 0.82292 0.78447 1.20924 1.21645 1.20053 1.21001 0.91578 0.91087 0.94148 1.31564 1.11827 1.16808 1.12294 1.08676 0.74358 0.78920 0.75798 1.93494 1.60100 1.87178 1.54075 1.93489 1.85386 1.47840 1.68283 1.31206 1.24102 1.09933 1.07765 1.20980 0.96471 0.93657 0.92100 1.21190 0.92465 1.00338 1.01314 1.21228 0.87442 0.98951 0.94350 1.98384 1.28614 1.96532 1.80218 1.21184 0.98531 1.01447 0.94164 1.20965 0.90669 0.92565 0.99046 0.79108 0.87906 0.93499 0.92878 0.91105 0.91980 0.85546 0.85005 0.83177 0.84158 0.84175 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.07 19.25 29.55 0.57 -5.50 16 2 C -0.10 -2.21 10.54 -37.12 -0.39 -2.61 16 3 C 0.26 5.52 5.45 -6.82 -0.04 5.49 16 4 N -0.55 -12.18 2.50 -176.57 -0.44 -12.63 16 5 C -0.26 -6.38 9.66 -15.06 -0.15 -6.52 16 6 H 0.09 2.02 7.90 -52.49 -0.41 1.61 16 7 C 0.01 0.17 4.85 -17.43 -0.08 0.09 16 8 N -0.87 -22.47 9.50 55.49 0.53 -21.94 16 9 Si 0.91 19.69 29.61 -169.99 -5.03 14.66 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 13 C 0.15 2.78 5.70 -4.04 -0.02 2.76 16 14 C -0.59 -9.76 6.16 37.16 0.23 -9.54 16 15 S 2.44 37.91 5.16 -107.50 -0.55 37.35 16 16 O -0.95 -16.91 17.11 -57.54 -0.98 -17.90 16 17 O -0.95 -16.68 17.13 -57.54 -0.99 -17.67 16 18 C -0.65 -9.05 5.66 -39.58 -0.22 -9.27 16 19 C -0.01 -0.17 9.47 -39.59 -0.37 -0.55 16 20 C -0.13 -1.55 9.83 -39.55 -0.39 -1.94 16 21 C 0.01 0.08 6.32 -39.50 -0.25 -0.17 16 22 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.18 16 23 C -0.13 -1.54 9.83 -39.55 -0.39 -1.93 16 24 C -0.01 -0.17 9.47 -39.59 -0.37 -0.55 16 25 H 0.19 3.30 7.80 -54.09 -0.42 2.88 16 26 H 0.10 2.38 6.42 -51.93 -0.33 2.05 16 27 H 0.05 0.86 7.98 -51.93 -0.41 0.45 16 28 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 30 H 0.06 1.01 7.95 -51.93 -0.41 0.60 16 31 H 0.13 2.11 7.20 -51.93 -0.37 1.73 16 32 H 0.13 2.22 8.14 -51.92 -0.42 1.80 16 33 H 0.15 1.75 7.56 -52.49 -0.40 1.35 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.15 1.71 7.57 -52.49 -0.40 1.31 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -30.34 344.46 -9.65 -39.99 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.99 Total: 5.34 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -1.88 Total: -30.23 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.08 Total: -34.56 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.97 Total: -35.56 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Atomic # 16 Polarization: 37.91 SS G_CDS: -0.55 Total: 37.35 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.34 -9.65 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.199 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds