Wall clock time and date at job start Tue Mar 31 2020 14:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39616 * 119.95322 * 260.27929 * 3 2 1 5 5 C 1.38002 * 120.04147 * 179.72291 * 4 3 2 6 6 F 1.35102 * 120.02028 * 180.29443 * 5 4 3 7 7 C 1.39981 * 119.95208 * 0.55103 * 5 4 3 8 8 C 1.47496 * 120.04153 * 179.69957 * 7 5 4 9 9 O 1.21497 * 119.99988 * 270.02480 * 8 7 5 10 10 O 1.34743 * 120.00078 * 90.02254 * 8 7 5 11 11 C 1.45196 * 117.00133 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46997 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46939 * 180.02562 * 12 11 10 14 14 S 1.81004 * 109.46904 * 180.02562 * 13 12 11 15 15 C 1.76194 * 99.99796 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00062 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99909 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99992 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46715 * 120.00254 * 19 17 15 22 22 H 1.48498 * 109.47104 * 240.00063 * 19 17 15 23 23 C 1.39980 * 119.91767 * 359.72687 * 7 5 4 24 24 F 1.35102 * 120.02628 * 179.97438 * 23 7 5 25 25 C 1.38002 * 119.95324 * 359.97438 * 23 7 5 26 26 H 1.08003 * 119.98201 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47160 * 300.00281 * 11 10 8 28 28 H 1.09003 * 109.47226 * 60.00013 * 11 10 8 29 29 H 1.08999 * 109.47414 * 300.00148 * 12 11 10 30 30 H 1.09003 * 109.47103 * 59.99960 * 12 11 10 31 31 H 1.08999 * 109.47181 * 300.00281 * 13 12 11 32 32 H 1.09000 * 109.46763 * 60.00029 * 13 12 11 33 33 H 0.96998 * 119.99891 * 179.97438 * 18 17 15 34 34 H 1.08001 * 119.97822 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2650 0.2052 1.1923 5 6 4.6450 0.2005 1.1954 6 9 5.3190 0.3926 2.3504 7 6 5.3459 0.0019 0.0001 8 6 6.8208 0.0031 0.0000 9 8 7.4275 1.0416 -0.1725 10 8 7.4955 -1.1475 0.1913 11 6 8.9454 -1.0712 0.1793 12 6 9.5313 -2.4654 0.4116 13 6 11.0592 -2.3850 0.3996 14 16 11.7523 -4.0344 0.6737 15 6 13.4724 -3.6576 0.6120 16 1 13.7969 -2.6413 0.4439 17 6 14.4104 -4.6667 0.7805 18 7 14.0150 -5.9052 0.9858 19 14 16.2341 -4.2673 0.7143 20 1 16.4138 -2.8132 0.4726 21 1 16.8687 -4.6362 2.0053 22 1 16.8693 -5.0349 -0.3868 23 6 4.6452 -0.1972 -1.1953 24 9 5.3194 -0.3885 -2.3503 25 6 3.2652 -0.1979 -1.1931 26 1 2.7238 0.3632 2.1135 27 1 9.2813 -0.6917 -0.7857 28 1 9.2805 -0.4003 0.9703 29 1 9.1953 -2.8446 1.3767 30 1 9.1962 -3.1367 -0.3791 31 1 11.3955 -2.0056 -0.5653 32 1 11.3938 -1.7138 1.1906 33 1 14.6706 -6.6105 1.1032 34 1 2.7242 -0.3511 -2.1153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805491004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:59 Heat of formation + Delta-G solvation = -124.854713 kcal Electronic energy + Delta-G solvation = -23129.136696 eV Core-core repulsion = 18982.745360 eV Total energy + Delta-G solvation = -4146.391337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.80357 -49.78241 -40.85307 -39.72034 -37.18890 -36.82771 -33.66789 -32.54112 -32.45335 -31.44302 -27.31278 -25.94305 -25.34176 -23.86979 -22.06762 -21.42262 -20.39771 -18.64240 -18.41002 -17.47684 -17.41872 -17.29265 -16.67988 -16.64986 -16.41849 -16.04823 -15.72986 -14.84229 -14.67690 -14.63408 -14.60954 -14.24306 -14.22667 -13.61934 -13.15809 -13.08994 -13.02497 -12.80111 -12.67554 -12.53659 -12.17750 -11.44576 -11.24334 -11.12168 -11.06740 -10.87666 -10.67701 -10.40209 -9.97118 -9.71288 -9.66374 -9.10688 -8.38410 -6.59242 -6.27215 -3.98384 -0.58816 0.04162 1.55439 1.73640 1.83298 2.16952 2.60183 2.78732 3.07134 3.19156 3.19370 3.28104 3.47374 3.49324 3.83934 3.93389 4.08123 4.17871 4.36093 4.74645 4.74779 5.00159 5.01783 5.05323 5.07058 5.09578 5.32549 5.38868 5.61917 5.70714 5.77371 6.00391 6.22531 6.39083 6.60344 6.64834 7.25369 7.57276 8.32801 9.19456 10.80985 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.001944 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.771371 B =14398.071465 C =14447.834884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C 0.250 3.750 3 C 0.057 3.943 4 C -0.117 4.117 5 C 0.177 3.823 6 F -0.108 7.108 7 C -0.149 4.149 8 C 0.512 3.488 9 O -0.477 6.477 10 O -0.339 6.339 11 C 0.070 3.930 12 C -0.098 4.098 13 C -0.115 4.115 14 S -0.123 6.123 15 C -0.518 4.518 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.177 3.823 24 F -0.108 7.108 25 C -0.117 4.117 26 H 0.165 0.835 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.267 0.733 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.621 12.787 -2.136 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.056 5.056 2 C -0.067 4.067 3 C 0.053 3.947 4 C -0.138 4.138 5 C 0.157 3.843 6 F -0.086 7.086 7 C -0.152 4.152 8 C 0.352 3.648 9 O -0.363 6.363 10 O -0.255 6.255 11 C -0.004 4.004 12 C -0.136 4.136 13 C -0.264 4.264 14 S 0.105 5.895 15 C -0.667 4.667 16 H 0.092 0.908 17 C -0.138 4.138 18 N -0.504 5.504 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 C 0.157 3.843 24 F -0.086 7.086 25 C -0.138 4.138 26 H 0.183 0.817 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.539 11.892 -1.988 28.242 hybrid contribution 2.681 1.451 -0.239 3.057 sum -22.859 13.342 -2.227 26.561 Atomic orbital electron populations 1.81347 1.11524 1.06643 1.06101 1.25128 0.91955 0.94855 0.94740 1.15317 0.85048 1.01235 0.93098 1.21099 0.91478 1.01705 0.99502 1.16848 0.89087 0.97965 0.80371 1.91660 1.79953 1.91557 1.45410 1.19366 0.92071 1.10122 0.93685 1.20436 0.87429 0.82862 0.74040 1.90933 1.69287 1.32872 1.43198 1.86628 1.23857 1.33690 1.81306 1.23467 0.73471 1.00422 1.03044 1.21308 0.94343 0.93734 1.04256 1.23185 0.95258 1.04437 1.03479 1.84667 1.05535 1.04897 1.94351 1.22741 0.89827 0.97146 1.56953 0.90751 1.25022 0.99750 0.94498 0.94501 1.70021 1.34603 0.99969 1.45852 0.86093 0.82750 0.78627 0.77937 1.19569 1.20536 1.20530 1.16847 0.89087 0.97727 0.80610 1.91660 1.79941 1.91590 1.45388 1.21097 0.91475 1.01722 0.99487 0.81696 0.90596 0.90604 0.90151 0.90147 0.91632 0.91631 0.92277 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -3.06 18.54 41.83 0.78 -2.29 16 2 C 0.25 1.33 15.31 -22.47 -0.34 0.99 16 3 C 0.06 0.22 5.73 -106.94 -0.61 -0.39 16 4 C -0.12 -0.46 9.71 -39.15 -0.38 -0.84 16 5 C 0.18 1.22 7.28 -39.02 -0.28 0.94 16 6 F -0.11 -0.93 16.82 2.25 0.04 -0.89 16 7 C -0.15 -1.30 5.77 -104.82 -0.60 -1.91 16 8 C 0.51 6.35 6.66 34.50 0.23 6.58 16 9 O -0.48 -7.06 16.90 -19.26 -0.33 -7.39 16 10 O -0.34 -4.46 10.23 -40.61 -0.42 -4.87 16 11 C 0.07 0.96 5.48 37.16 0.20 1.16 16 12 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 13 C -0.12 -2.22 5.67 37.16 0.21 -2.00 16 14 S -0.12 -3.12 21.44 -107.50 -2.30 -5.43 16 15 C -0.52 -14.60 9.50 30.94 0.29 -14.31 16 16 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 18 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 19 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.18 1.22 7.28 -39.02 -0.28 0.94 16 24 F -0.11 -0.93 16.82 2.25 0.04 -0.89 16 25 C -0.12 -0.46 9.71 -39.16 -0.38 -0.84 16 26 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -33.10 345.08 -6.41 -39.51 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -2.93 Total: -4.90 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.20 Total: -9.44 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 1.51 Total: -27.13 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.74 Total: -12.26 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.08 Total: -1.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.10 -6.41 -39.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805491004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.346 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds