Wall clock time and date at job start Tue Mar 31 2020 14:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39616 * 119.95322 * 260.27929 * 3 2 1 5 5 C 1.38002 * 120.04147 * 179.72291 * 4 3 2 6 6 F 1.35102 * 120.02028 * 180.29443 * 5 4 3 7 7 C 1.39981 * 119.95208 * 0.55103 * 5 4 3 8 8 C 1.47496 * 120.04153 * 179.69957 * 7 5 4 9 9 O 1.21497 * 119.99988 * 270.02480 * 8 7 5 10 10 O 1.34743 * 120.00078 * 90.02254 * 8 7 5 11 11 C 1.45196 * 117.00133 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46997 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46939 * 180.02562 * 12 11 10 14 14 S 1.81004 * 109.46904 * 180.02562 * 13 12 11 15 15 C 1.76194 * 99.99796 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00062 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99909 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99992 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46715 * 120.00254 * 19 17 15 22 22 H 1.48498 * 109.47104 * 240.00063 * 19 17 15 23 23 C 1.39980 * 119.91767 * 359.72687 * 7 5 4 24 24 F 1.35102 * 120.02628 * 179.97438 * 23 7 5 25 25 C 1.38002 * 119.95324 * 359.97438 * 23 7 5 26 26 H 1.08003 * 119.98201 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47160 * 300.00281 * 11 10 8 28 28 H 1.09003 * 109.47226 * 60.00013 * 11 10 8 29 29 H 1.08999 * 109.47414 * 300.00148 * 12 11 10 30 30 H 1.09003 * 109.47103 * 59.99960 * 12 11 10 31 31 H 1.08999 * 109.47181 * 300.00281 * 13 12 11 32 32 H 1.09000 * 109.46763 * 60.00029 * 13 12 11 33 33 H 0.96998 * 119.99891 * 179.97438 * 18 17 15 34 34 H 1.08001 * 119.97822 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2650 0.2052 1.1923 5 6 4.6450 0.2005 1.1954 6 9 5.3190 0.3926 2.3504 7 6 5.3459 0.0019 0.0001 8 6 6.8208 0.0031 0.0000 9 8 7.4275 1.0416 -0.1725 10 8 7.4955 -1.1475 0.1913 11 6 8.9454 -1.0712 0.1793 12 6 9.5313 -2.4654 0.4116 13 6 11.0592 -2.3850 0.3996 14 16 11.7523 -4.0344 0.6737 15 6 13.4724 -3.6576 0.6120 16 1 13.7969 -2.6413 0.4439 17 6 14.4104 -4.6667 0.7805 18 7 14.0150 -5.9052 0.9858 19 14 16.2341 -4.2673 0.7143 20 1 16.4138 -2.8132 0.4726 21 1 16.8687 -4.6362 2.0053 22 1 16.8693 -5.0349 -0.3868 23 6 4.6452 -0.1972 -1.1953 24 9 5.3194 -0.3885 -2.3503 25 6 3.2652 -0.1979 -1.1931 26 1 2.7238 0.3632 2.1135 27 1 9.2813 -0.6917 -0.7857 28 1 9.2805 -0.4003 0.9703 29 1 9.1953 -2.8446 1.3767 30 1 9.1962 -3.1367 -0.3791 31 1 11.3955 -2.0056 -0.5653 32 1 11.3938 -1.7138 1.1906 33 1 14.6706 -6.6105 1.1032 34 1 2.7242 -0.3511 -2.1153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805491004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:58 Heat of formation + Delta-G solvation = -142.612881 kcal Electronic energy + Delta-G solvation = -23129.906748 eV Core-core repulsion = 18982.745360 eV Total energy + Delta-G solvation = -4147.161388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.38025 -50.35819 -41.78511 -40.28621 -38.07022 -37.55023 -34.98188 -34.58677 -33.14413 -31.88332 -28.47824 -27.67664 -26.52269 -24.33861 -23.06395 -22.64422 -20.90675 -19.73626 -19.30805 -18.99572 -18.39590 -17.77830 -17.58750 -17.26995 -17.08962 -16.89769 -16.63223 -16.42987 -16.04503 -15.89259 -15.21289 -15.10062 -14.77591 -14.72215 -14.35984 -14.20067 -13.86096 -13.64245 -13.59105 -13.23526 -13.19396 -13.02787 -12.96557 -12.64889 -12.47843 -12.43665 -12.06717 -11.60642 -11.49767 -11.15843 -10.50731 -10.35419 -10.14541 -8.67629 -8.38139 -6.14367 -1.08858 -0.38056 0.61124 1.06656 1.32587 1.38761 1.39037 1.42116 1.51328 1.76343 2.09705 2.26812 2.36642 2.57760 2.96664 3.02394 3.13377 3.32871 3.37864 3.59126 3.81747 3.88894 3.91125 4.11538 4.25282 4.28398 4.30706 4.47058 4.54902 4.66787 4.74827 4.97420 4.99612 5.18612 5.23956 5.40736 6.18242 6.22259 6.25395 7.04752 8.71397 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.001944 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.771371 B =14398.071465 C =14447.834884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.281 3.719 3 C 0.068 3.932 4 C -0.089 4.089 5 C 0.167 3.833 6 F -0.121 7.121 7 C -0.167 4.167 8 C 0.512 3.488 9 O -0.507 6.507 10 O -0.343 6.343 11 C 0.077 3.923 12 C -0.086 4.086 13 C -0.092 4.092 14 S -0.184 6.184 15 C -0.540 4.540 16 H 0.075 0.925 17 C 0.016 3.984 18 N -0.906 5.906 19 Si 0.994 3.006 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.167 3.833 24 F -0.121 7.121 25 C -0.089 4.089 26 H 0.194 0.806 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.272 0.728 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.723 13.820 -2.309 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.035 4.035 3 C 0.065 3.935 4 C -0.110 4.110 5 C 0.147 3.853 6 F -0.099 7.099 7 C -0.171 4.171 8 C 0.354 3.646 9 O -0.395 6.395 10 O -0.259 6.259 11 C 0.002 3.998 12 C -0.125 4.125 13 C -0.241 4.241 14 S 0.045 5.955 15 C -0.688 4.688 16 H 0.093 0.907 17 C -0.189 4.189 18 N -0.543 5.543 19 Si 0.816 3.184 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.197 1.197 23 C 0.147 3.853 24 F -0.099 7.099 25 C -0.110 4.110 26 H 0.211 0.789 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -26.663 12.922 -2.160 29.708 hybrid contribution 2.896 1.168 -0.192 3.128 sum -23.767 14.090 -2.351 27.729 Atomic orbital electron populations 1.81404 1.12810 1.08155 1.07469 1.24992 0.91645 0.93489 0.93417 1.15201 0.84243 1.00985 0.93101 1.21298 0.90069 0.98999 1.00619 1.16937 0.89882 0.99150 0.79367 1.91629 1.80429 1.91861 1.45999 1.19366 0.89856 1.12510 0.95386 1.21062 0.88872 0.81961 0.72662 1.90908 1.70324 1.33643 1.44627 1.86615 1.23336 1.34508 1.81456 1.23231 0.74225 0.98866 1.03510 1.21117 0.91776 0.95140 1.04432 1.23071 0.97306 1.00016 1.03738 1.84635 1.05568 1.10632 1.94681 1.23097 0.91116 0.97396 1.57190 0.90732 1.26053 1.04886 0.94219 0.93754 1.70146 1.36413 1.01064 1.46648 0.84966 0.76343 0.78770 0.78290 1.18698 1.19707 1.19699 1.16936 0.89882 0.98922 0.79594 1.91629 1.80418 1.91895 1.45976 1.21296 0.90066 0.99008 1.00612 0.78877 0.90136 0.90145 0.90054 0.90049 0.91175 0.91170 0.91910 0.78876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.88 18.54 19.00 0.35 -5.53 16 2 C 0.28 2.16 15.31 88.33 1.35 3.51 16 3 C 0.07 0.31 5.73 -21.37 -0.12 0.18 16 4 C -0.09 -0.44 9.71 22.55 0.22 -0.22 16 5 C 0.17 2.03 7.28 22.64 0.16 2.20 16 6 F -0.12 -1.97 16.82 44.97 0.76 -1.22 16 7 C -0.17 -2.78 5.77 -19.99 -0.12 -2.89 16 8 C 0.51 12.63 6.66 70.26 0.47 13.10 16 9 O -0.51 -15.12 16.90 19.85 0.34 -14.79 16 10 O -0.34 -8.92 10.23 -56.53 -0.58 -9.50 16 11 C 0.08 2.05 5.48 71.98 0.39 2.44 16 12 C -0.09 -2.64 5.60 30.60 0.17 -2.47 16 13 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 14 S -0.18 -9.53 21.44 -56.49 -1.21 -10.74 16 15 C -0.54 -30.73 9.50 67.96 0.65 -30.08 16 16 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 17 C 0.02 0.90 5.49 84.86 0.47 1.36 16 18 N -0.91 -54.01 13.22 21.65 0.29 -53.73 16 19 Si 0.99 43.48 29.55 68.60 2.03 45.50 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 C 0.17 2.03 7.28 22.64 0.16 2.20 16 24 F -0.12 -1.97 16.82 44.97 0.76 -1.22 16 25 C -0.09 -0.44 9.71 22.55 0.22 -0.22 16 26 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.62 8.14 -2.40 -0.02 2.61 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 Total: -1.00 -73.11 345.08 8.32 -64.79 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: 1.16 Total: 0.46 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.44 Total: -14.03 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.64 Total: -59.26 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.24 Total: -24.29 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.51 Total: -2.43 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.21 Total: -10.74 kcal Total: -73.11 8.32 -64.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805491004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.827 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds