Wall clock time and date at job start Tue Mar 31 2020 15:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 119.99906 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99849 * 3 2 1 5 5 H 1.48496 * 109.47176 * 30.00396 * 3 2 1 6 6 H 1.48503 * 109.46816 * 149.99875 * 3 2 1 7 7 C 1.38801 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00142 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00000 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46925 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.46985 * 179.97438 * 12 11 10 14 14 C 1.34706 * 117.00217 * 179.97438 * 13 12 11 15 15 O 1.21477 * 119.99835 * 0.02562 * 14 13 12 16 16 C 1.47742 * 120.00581 * 180.02562 * 14 13 12 17 17 C 1.39585 * 120.11682 * 0.02562 * 16 14 13 18 18 C 1.38439 * 119.78334 * 179.97438 * 17 16 14 19 19 O 1.35909 * 119.98167 * 179.97438 * 18 17 16 20 20 C 1.38862 * 120.04195 * 359.97438 * 18 17 16 21 21 C 1.38258 * 120.24449 * 0.03791 * 20 18 17 22 22 N 1.48018 * 119.89270 * 179.97438 * 21 20 18 23 23 O 1.21799 * 119.99794 * 179.97438 * 22 21 20 24 24 O 1.21797 * 119.99787 * 359.97438 * 22 21 20 25 25 C 1.37995 * 120.21432 * 359.96496 * 21 20 18 26 26 H 0.96991 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46741 * 59.99639 * 10 9 7 28 28 H 1.09000 * 109.46908 * 300.00094 * 10 9 7 29 29 H 1.08993 * 109.47153 * 60.00033 * 11 10 9 30 30 H 1.09000 * 109.47318 * 299.99818 * 11 10 9 31 31 H 1.09001 * 109.47112 * 60.00279 * 12 11 10 32 32 H 1.09000 * 109.47342 * 299.99688 * 12 11 10 33 33 H 1.07991 * 120.10681 * 359.70001 * 17 16 14 34 34 H 0.96696 * 114.00594 * 90.00165 * 19 18 17 35 35 H 1.07993 * 119.87993 * 180.02562 * 20 18 17 36 36 H 1.07999 * 120.01905 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9793 -5.3243 -0.0001 12 6 3.1514 -6.3077 0.0005 13 8 2.6422 -7.6675 0.0005 14 6 3.5517 -8.6612 0.0005 15 8 4.7378 -8.3989 0.0010 16 6 3.1068 -10.0700 0.0000 17 6 1.7445 -10.3743 -0.0011 18 6 1.3353 -11.6968 -0.0022 19 8 0.0100 -11.9977 -0.0027 20 6 2.2782 -12.7163 -0.0027 21 6 3.6279 -12.4165 -0.0014 22 7 4.6263 -13.5093 -0.0014 23 8 5.8158 -13.2474 -0.0007 24 8 4.2583 -14.6704 -0.0021 25 6 4.0473 -11.1018 -0.0003 26 1 -0.4850 0.8400 0.0004 27 1 3.1245 -3.7313 0.8906 28 1 3.1244 -3.7314 -0.8894 29 1 1.3710 -5.4840 -0.8903 30 1 1.3704 -5.4847 0.8897 31 1 3.7593 -6.1479 0.8910 32 1 3.7606 -6.1476 -0.8890 33 1 1.0122 -9.5807 0.0034 34 1 -0.3734 -12.0842 -0.8862 35 1 1.9561 -13.7470 -0.0040 36 1 5.1024 -10.8713 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805503263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:32 Heat of formation + Delta-G solvation = -113.221199 kcal Electronic energy + Delta-G solvation = -23361.394486 eV Core-core repulsion = 19326.595133 eV Total energy + Delta-G solvation = -4034.799354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.71793 -41.20993 -40.12880 -37.74423 -37.03634 -36.88649 -33.81450 -32.83797 -32.50508 -31.10634 -27.36914 -27.01173 -25.67050 -24.83714 -23.18628 -21.85201 -21.50119 -20.11881 -19.18436 -18.31588 -18.02231 -17.93773 -17.48044 -17.41029 -16.93408 -16.76271 -16.32866 -15.66249 -14.90325 -14.87804 -14.58908 -13.68829 -13.57612 -13.52977 -13.10176 -12.91426 -12.80081 -12.25087 -12.14187 -11.98540 -11.67905 -11.59459 -11.50878 -11.31728 -11.10456 -11.08574 -10.92681 -10.72319 -10.51187 -10.40472 -9.92558 -9.72597 -9.13895 -8.44741 -6.64524 -6.31296 -4.03075 -0.84805 -0.30227 0.62375 0.73686 1.74409 2.06988 2.60795 3.05553 3.15460 3.17192 3.24290 3.41797 3.74525 3.82390 3.98935 4.00968 4.13679 4.29949 4.47529 4.84621 4.93337 4.97777 5.05463 5.07426 5.14355 5.26447 5.27979 5.33177 5.63006 5.71535 5.81139 5.94415 6.15985 6.31219 6.52940 6.69849 7.11650 7.24290 7.52863 8.28358 9.15312 10.76829 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.001821 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.293891 B =15371.813775 C =16291.823068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.347 6.347 14 C 0.510 3.490 15 O -0.490 6.490 16 C -0.098 4.098 17 C -0.038 4.038 18 C 0.107 3.893 19 O -0.480 6.480 20 C -0.056 4.056 21 C -0.038 4.038 22 N 0.028 4.972 23 O -0.146 6.146 24 O -0.151 6.151 25 C -0.005 4.005 26 H 0.268 0.732 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.403 0.597 35 H 0.167 0.833 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -25.944 -1.726 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.263 6.263 14 C 0.352 3.648 15 O -0.378 6.378 16 C -0.101 4.101 17 C -0.056 4.056 18 C 0.061 3.939 19 O -0.291 6.291 20 C -0.076 4.076 21 C -0.121 4.121 22 N 0.550 4.450 23 O -0.364 6.364 24 O -0.368 6.368 25 C -0.024 4.024 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.187 0.813 34 H 0.261 0.739 35 H 0.184 0.816 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.810 -25.330 -1.119 25.368 hybrid contribution 2.120 1.056 -0.480 2.416 sum 2.930 -24.274 -1.599 24.503 Atomic orbital electron populations 1.70008 1.05933 1.27496 1.47001 1.25024 0.95113 0.99170 0.94450 0.86137 0.79446 0.81372 0.78423 1.20217 1.20698 1.19637 1.22689 0.94590 0.90598 1.58868 0.90797 1.84651 1.08615 0.99294 1.96904 1.23183 1.03601 0.96162 1.03469 1.21308 0.96294 0.91587 1.04459 1.23440 0.98137 0.75379 1.03153 1.86486 1.39315 1.17225 1.83288 1.20558 0.84468 0.85884 0.73846 1.90910 1.17639 1.84663 1.44604 1.18839 0.93019 0.90747 1.07445 1.22365 0.95828 0.97559 0.89885 1.17916 0.84489 0.90193 1.01276 1.84924 1.17626 1.92023 1.34511 1.21561 0.89803 1.02953 0.93251 1.20628 0.88837 0.87369 1.15262 1.43444 1.01816 1.01910 0.97861 1.94603 0.99156 1.89824 1.52820 1.94562 1.85501 1.03648 1.53091 1.21090 1.02998 0.88531 0.89781 0.92194 0.91625 0.91643 0.90210 0.90189 0.90624 0.90624 0.81289 0.73867 0.81559 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 2 C 0.07 1.98 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.52 -14.41 9.50 30.94 0.29 -14.12 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.05 21.44 -107.50 -2.30 -5.36 16 10 C -0.12 -2.15 5.67 37.16 0.21 -1.94 16 11 C -0.10 -1.41 5.60 -26.73 -0.15 -1.56 16 12 C 0.07 0.91 5.48 37.16 0.20 1.11 16 13 O -0.35 -3.87 9.47 -40.51 -0.38 -4.26 16 14 C 0.51 5.52 7.90 34.61 0.27 5.80 16 15 O -0.49 -6.60 16.13 -19.25 -0.31 -6.91 16 16 C -0.10 -0.79 5.87 -105.00 -0.62 -1.41 16 17 C -0.04 -0.23 9.56 -39.01 -0.37 -0.60 16 18 C 0.11 0.55 6.70 -39.28 -0.26 0.29 16 19 O -0.48 -1.90 13.50 -19.45 -0.26 -2.16 16 20 C -0.06 -0.32 9.49 -39.34 -0.37 -0.70 16 21 C -0.04 -0.30 6.84 -80.03 -0.55 -0.85 16 22 N 0.03 0.28 4.45 33.92 0.15 0.43 16 23 O -0.15 -1.64 18.44 -29.46 -0.54 -2.18 16 24 O -0.15 -1.56 18.43 -29.46 -0.54 -2.11 16 25 C 0.00 -0.04 9.10 -39.16 -0.36 -0.40 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.07 1.20 8.14 -51.91 -0.42 0.78 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.17 0.86 7.61 -52.49 -0.40 0.46 16 34 H 0.40 -0.38 9.06 45.56 0.41 0.04 16 35 H 0.17 0.72 7.59 -52.49 -0.40 0.33 16 36 H 0.17 1.44 7.19 -52.49 -0.38 1.06 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -33.48 349.56 -7.85 -41.33 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -2.84 Total: -3.03 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.79 Total: -12.48 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.88 Total: -24.11 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -2.04 Total: -17.62 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.30 Total: -5.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.48 -7.85 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805503263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.891 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds